[From nobody Mon Apr 20 01:07:07 2026 Received: (at submit) by bugs.debian.org; 9 Feb 2026 18:06:11 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-121.2 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER,FVGT_m_MULTI_ODD,HAS_PACKAGE, USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 436; hammy, 150; neutral, 400; spammy, 0. spammytokens: hammytokens:0.000-+--python3, 0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--H*F:U*sanvila, 0.000-+--H*rp:U*sanvila Return-path: <sanvila@debian.org> Received: from muffat.debian.org ([2607:f8f0:614:1::1274:33]:51984) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1vpVeF-001MYP-0d for submit@bugs.debian.org; Mon, 09 Feb 2026 18:06:11 +0000 Received: from paradis.debian.org ([2607:f8f0:614:1::1274:67]:57224) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by muffat.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1vpVeF-001Bnq-0J for submit@bugs.debian.org; Mon, 09 Feb 2026 18:06:11 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Subject:To:From:Reply-To:Cc: MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=5vXZAiaSeKBVgab8nAxpTuRheJ6mTdG9kFAa/BMODlw=; b=XFlqbCmf/tv9Hxk+XIL6ru4Ud+ fTMC6SfjAFzuYSfnXUuXu2ipbfHLgFF2Y9f8czUYGO/wS2hVcwqpMzht2gxcvK5Zjf6iKeUOcTNR5 F96RaOKLzvmqn4jkmACrNZMu1BexzK0rEMnEgTH9y5OaSumsqXCNLDhabBxSNUYDugJHUVejvBeYn pL8YuG6GP0PDEPoOF73nb41lmq+ubVUu/1DeSaJlKXjLQMltcsv/ks84QeSdGxjHZhy65t7Jru6st aMiuTUsN741LWvVvewWJTWwKYKFYQkU1T4qJKmLK2CDrLKyC/fTEJtWOybON0+LYeBnfNH5LIvWgz olMfCWJQ==; Received: from sanvila by paradis.debian.org with local (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1vpVeE-00CCst-3B for submit@bugs.debian.org; Mon, 09 Feb 2026 18:06:10 +0000 From: Santiago Vila <sanvila@debian.org> To: Debian BTS <submit@bugs.debian.org> Subject: xraylarch: FTBFS: AttributeError: module 'collections' has no attribute 'MutableSet' X-Debbugs-Cc: sanvila@debian.org Message-Id: <E1vpVeE-00CCst-3B@paradis.debian.org> Date: Mon, 09 Feb 2026 18:06:10 +0000 Delivered-To: submit@bugs.debian.org Package: src:xraylarch Version: 0.9.81+ds1-3 Severity: serious Tags: ftbfs forky sid Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202602/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:xraylarch, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.14 3.13" rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-xraylarch.substvars debian/python-xraylarch-doc.substvars debian/files rm -fr -- debian/python3-xraylarch/ debian/tmp/ debian/python-xraylarch-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ [... snipped ...] adding 'larch/io/gse_xdiscan.py' adding 'larch/io/hdf5group.py' adding 'larch/io/mergegroups.py' adding 'larch/io/nexus_xas.py' adding 'larch/io/rixs_aps_gsecars.py' adding 'larch/io/rixs_esrf_fame.py' adding 'larch/io/rixs_esrf_id26.py' adding 'larch/io/rixsdata.py' adding 'larch/io/save_restore.py' adding 'larch/io/specfile_reader.py' adding 'larch/io/stepscan_file.py' adding 'larch/io/tifffile.py' adding 'larch/io/xafs_beamlines.py' adding 'larch/io/xdi.py' adding 'larch/io/xrd_hdf5.py' adding 'larch/io/xrd_netcdf.py' adding 'larch/io/xrf_netcdf.py' adding 'larch/io/xsp3_hdf5.py' adding 'larch/io/xas_data_source/__init__.py' adding 'larch/io/xas_data_source/base.py' adding 'larch/io/xas_data_source/hdf5_utils.py' adding 'larch/io/xas_data_source/nexus.py' adding 'larch/io/xas_data_source/read.py' adding 'larch/io/xas_data_source/sources.py' adding 'larch/io/xas_data_source/spec.py' adding 'larch/math/__init__.py' adding 'larch/math/convolution1D.py' adding 'larch/math/deglitch.py' adding 'larch/math/fitpeak.py' adding 'larch/math/gridxyz.py' adding 'larch/math/learn_regress.py' adding 'larch/math/lincombo_fitting.py' adding 'larch/math/lineshapes.py' adding 'larch/math/normalization.py' adding 'larch/math/pca.py' adding 'larch/math/peaks.py' adding 'larch/math/smoothing.py' adding 'larch/math/spline.py' adding 'larch/math/tomography.py' adding 'larch/math/transformations.py' adding 'larch/math/utils.py' adding 'larch/plot/__init__.py' adding 'larch/plot/bokeh_xafsplots.py' adding 'larch/plot/plot_rixsdata.py' adding 'larch/plot/plotly_xafsplots.py' adding 'larch/qtlib/__init__.py' adding 'larch/qtlib/console.py' adding 'larch/qtlib/delegates.py' adding 'larch/qtlib/items.py' adding 'larch/qtlib/model.py' adding 'larch/qtlib/plot1D.py' adding 'larch/qtlib/plot2D.py' adding 'larch/qtlib/plotarea.py' adding 'larch/qtlib/view.py' adding 'larch/qtrixs/__init__.py' adding 'larch/qtrixs/application.py' adding 'larch/qtrixs/items.py' adding 'larch/qtrixs/model.py' adding 'larch/qtrixs/plotrixs.py' adding 'larch/qtrixs/profiletoolbar.py' adding 'larch/qtrixs/view.py' adding 'larch/qtrixs/window.py' adding 'larch/utils/__init__.py' adding 'larch/utils/debugtimer.py' adding 'larch/utils/gformat.py' adding 'larch/utils/jsonutils.py' adding 'larch/utils/logging.py' adding 'larch/utils/paths.py' adding 'larch/utils/physical_constants.py' adding 'larch/utils/shellutils.py' adding 'larch/utils/show.py' adding 'larch/utils/strutils.py' adding 'larch/wxlib/__init__.py' adding 'larch/wxlib/allow_idle_macosx.py' adding 'larch/wxlib/athena_importer.py' adding 'larch/wxlib/cif_browser.py' adding 'larch/wxlib/columnframe.py' adding 'larch/wxlib/feff_browser.py' adding 'larch/wxlib/gui_utils.py' adding 'larch/wxlib/inputhook.py' adding 'larch/wxlib/larch_updater.py' adding 'larch/wxlib/larchfilling.py' adding 'larch/wxlib/larchframe.py' adding 'larch/wxlib/parameter.py' adding 'larch/wxlib/plotter.py' adding 'larch/wxlib/readlinetextctrl.py' adding 'larch/wxlib/reportframe.py' adding 'larch/wxlib/specfile_importer.py' adding 'larch/wxlib/structure2feff_browser.py' adding 'larch/wxlib/xafsplots.py' adding 'larch/wxlib/xas_importer.py' adding 'larch/wxlib/xrfdisplay.py' adding 'larch/wxlib/xrfdisplay_fitpeaks.py' adding 'larch/wxlib/xrfdisplay_utils.py' adding 'larch/wxmap/__init__.py' adding 'larch/wxmap/gse_dtcorrect.py' adding 'larch/wxmap/mapimageframe.py' adding 'larch/wxmap/mapmathpanel.py' adding 'larch/wxmap/maptomopanel.py' adding 'larch/wxmap/mapviewer.py' adding 'larch/wxmap/mapxrfpanel.py' adding 'larch/wxxas/__init__.py' adding 'larch/wxxas/config.py' adding 'larch/wxxas/exafs_panel.py' adding 'larch/wxxas/feffit_panel.py' adding 'larch/wxxas/larix_app.py' adding 'larch/wxxas/lincombo_panel.py' adding 'larch/wxxas/pca_panel.py' adding 'larch/wxxas/prepeak_panel.py' adding 'larch/wxxas/regress_panel.py' adding 'larch/wxxas/taskpanel.py' adding 'larch/wxxas/xas_controller.py' adding 'larch/wxxas/xas_dialogs.py' adding 'larch/wxxas/xasgui.py' adding 'larch/wxxas/xasnorm_panel.py' adding 'larch/wxxas/xydata_panel.py' adding 'larch/wxxrd/ImageControlsFrame.py' adding 'larch/wxxrd/XRD2Dviewer.py' adding 'larch/wxxrd/XRDCalibrationFrame.py' adding 'larch/wxxrd/XRDMaskFrame.py' adding 'larch/wxxrd/__init__.py' adding 'larch/wxxrd/requirements.txt' adding 'larch/wxxrd/xrd1d_display.py' adding 'larch/xafs/__init__.py' adding 'larch/xafs/autobk.py' adding 'larch/xafs/cauchy_wavelet.py' adding 'larch/xafs/deconvolve.py' adding 'larch/xafs/diffkk.py' adding 'larch/xafs/estimate_noise.py' adding 'larch/xafs/feff8lpath.py' adding 'larch/xafs/feffdat.py' adding 'larch/xafs/feffit.py' adding 'larch/xafs/feffrunner.py' adding 'larch/xafs/feffutils.py' adding 'larch/xafs/fluo.py' adding 'larch/xafs/mback.py' adding 'larch/xafs/pre_edge.py' adding 'larch/xafs/prepeaks.py' adding 'larch/xafs/rebin_xafs.py' adding 'larch/xafs/sigma2_models.py' adding 'larch/xafs/xafsft.py' adding 'larch/xafs/xafsutils.py' adding 'larch/xray/__init__.py' adding 'larch/xray/background.py' adding 'larch/xray/cromer_liberman.py' adding 'larch/xrd/__init__.py' adding 'larch/xrd/amcsd.py' adding 'larch/xrd/amcsd_cif0.db' adding 'larch/xrd/amcsd_cif1.db' adding 'larch/xrd/amcsd_utils.py' adding 'larch/xrd/cif2feff.py' adding 'larch/xrd/cifdb.py' adding 'larch/xrd/struct2xas.py' adding 'larch/xrd/structure2feff.py' adding 'larch/xrd/xrd.py' adding 'larch/xrd/xrd_bgr.py' adding 'larch/xrd/xrd_cif.py' adding 'larch/xrd/xrd_files.py' adding 'larch/xrd/xrd_fitting.py' adding 'larch/xrd/xrd_pyFAI.py' adding 'larch/xrd/xrd_tools.py' adding 'larch/xrd/templates/fdmnes.tmpl' adding 'larch/xrd/templates/feff_exafs.tmpl' adding 'larch/xrf/__init__.py' adding 'larch/xrf/deadtime.py' adding 'larch/xrf/mca.py' adding 'larch/xrf/roi.py' adding 'larch/xrf/xrf_bgr.py' adding 'larch/xrf/xrf_calib.py' adding 'larch/xrf/xrf_model.py' adding 'larch/xrf/xrf_peak.py' adding 'larch/xrmmap/__init__.py' adding 'larch/xrmmap/asciifiles.py' adding 'larch/xrmmap/configfile.py' adding 'larch/xrmmap/gsexrm_utils.py' adding 'larch/xrmmap/xrm_mapfile.py' adding 'larch/xsw/SimpleParratt.py' adding 'larch/xsw/__init__.py' adding 'larch/xsw/fluo_det.py' adding 'larch/xsw/multilayer_film.py' adding 'larch/xsw/plugins.txt' adding 'xraylarch-0.9.81+ds1.dist-info/licenses/LICENSE' adding 'xraylarch-0.9.81+ds1.dist-info/METADATA' adding 'xraylarch-0.9.81+ds1.dist-info/WHEEL' adding 'xraylarch-0.9.81+ds1.dist-info/entry_points.txt' adding 'xraylarch-0.9.81+ds1.dist-info/top_level.txt' adding 'xraylarch-0.9.81+ds1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built xraylarch-0.9.81+ds1-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build make[1]: Entering directory '/<<PKGBUILDDIR>>' I: pybuild base:384: echo /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xraylarch/build # generate the desktop files cd /<<PKGBUILDDIR>>/debian; ./build-desktop larch-cli.desktop larch-gui.desktop larch-larix.desktop larch-xrfmap-viewer.desktop larch-xrf-viewer.desktop larch-xrd1d-viewer.desktop # build the doc env PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xraylarch/build \ SPHINXBUILD="python3 -m sphinx" \ SPHINXOPTS="-D mathjax_path=MathJax.js" \ /usr/bin/make -C doc html make[2]: Entering directory '/<<PKGBUILDDIR>>/doc' cp sphinx/ext_mathjax.py extensions.py sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v8.2.3 mkdir -p failed for path /sbuild-nonexistent/.config/matplotlib: [Errno 13] Permission denied: '/sbuild-nonexistent' Matplotlib created a temporary cache directory at /tmp/matplotlib-y_wgvyvs because there was an issue with the default path (/sbuild-nonexistent/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Configuration error! Versions ======== * Platform: linux; (Linux-6.12.63+deb13-cloud-amd64-x86_64-with-glibc2.42) * Python version: 3.13.12 (CPython) * Sphinx version: 8.2.3 * Docutils version: 0.22.4 * Jinja2 version: 3.1.6 * Pygments version: 2.19.2 Last Messages ============= None. Loaded Extensions ================= None. Traceback ========= File "/usr/lib/python3/dist-packages/sphinx/config.py", line 616, in eval_config_file raise ConfigError(msg % traceback.format_exc()) from exc sphinx.errors.ConfigError: There is a programmable error in your configuration file: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/config.py", line 601, in eval_config_file exec(code, namespace) # NoQA: S102 ~~~~^^^^^^^^^^^^^^^^^ File "/<<PKGBUILDDIR>>/doc/conf.py", line 63, in <module> import larch File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xraylarch/build/larch/__init__.py", line 37, in <module> from .version import __date__, __version__, __release_version__ File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xraylarch/build/larch/version.py", line 14, in <module> import urllib3 File "/usr/lib/python3/dist-packages/urllib3/__init__.py", line 15, in <module> from ._base_connection import _TYPE_BODY File "/usr/lib/python3/dist-packages/urllib3/_base_connection.py", line 5, in <module> from .util.connection import _TYPE_SOCKET_OPTIONS File "/usr/lib/python3/dist-packages/urllib3/util/__init__.py", line 5, in <module> from .request import SKIP_HEADER, SKIPPABLE_HEADERS, make_headers File "/usr/lib/python3/dist-packages/urllib3/util/request.py", line 37, in <module> from backports import zstd as _unused_module_zstd # noqa: F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<<PKGBUILDDIR>>/doc/sphinx/ext/backports.py", line 255, in <module> class OrderedSet(collections.MutableSet): ^^^^^^^^^^^^^^^^^^^^^^ AttributeError: module 'collections' has no attribute 'MutableSet' The full traceback has been saved in: /tmp/sphinx-err-o5k9i6vs.log To report this error to the developers, please open an issue at <https://github.com/sphinx-doc/sphinx/issues/>. Thanks! Please also report this if it was a user error, so that a better error message can be provided next time. make[2]: *** [Makefile:19: html] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc' make[1]: *** [debian/rules:14: execute_after_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]