[From nobody Sat May 9 21:55:04 2026 Received: (at submit) by bugs.debian.org; 13 Oct 2025 13:01:38 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-114.1 required=4.0 tests=BAYES_00,DKIMWL_WL_HIGH, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FOURLA, FROMDEVELOPER,FVGT_m_MULTI_ODD,PGPSIGNATURE,SPF_HELO_NONE,SPF_NONE, UNPARSEABLE_RELAY,USER_IN_DKIM_WELCOMELIST,XMAILER_REPORTBUG autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 160; hammy, 150; neutral, 67; spammy, 0. spammytokens: hammytokens:0.000-+--sk:iqizbae, 0.000-+--sk:iQIzBAE, 0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311 Return-path: <roehling@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:38642) by buxtehude.debian.org with utf8esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <roehling@debian.org>) id 1v8Ht5-0091X3-33 for submit@bugs.debian.org; Mon, 13 Oct 2025 12:42:52 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Date:Message-ID:Subject:To:From: Content-Transfer-Encoding:MIME-Version:Content-Type:Reply-To:Cc:Content-ID: Content-Description:In-Reply-To:References; bh=7lEUNHlNeLKL7q7kncPFsNyr42D9dG4ungEDJWs5I3g=; b=XaGXAitKkT+fjPw9bUsWoeQCRt dnPyvRACnCElHIGyXBvb8Bvb/XFHpX2KXd8Uz3fBSTtTbfphI7m0g0cmv9IxTiw/oKfIF/Sh7jpfh 7/dTKXxum270iIahLoLspoDdxRacWkHEcH6GWQFffGfwkEiJqPifoaqvRjkaSqWy3vRVncGwD/HlE cBY7jGYWo0fj2Hw8xjkeFv4pJOTooK5C2cUHBDvLbhMoC8cSlPfH5wiqdLpkuGxXh624+BB1j8xNy nVWSoYLyMg9OBi9FbDt0LQ0gBg1WCRlJqShruK9DeOLzcMvH7xegf7E1joPwLgNQs1RNX8ETFGpsC DB+wFukA==; Received: from authenticated user by stravinsky.debian.org with utf8esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <roehling@debian.org>) id 1v8Ht4-000BLZ-PN for submit@bugs.debian.org; Mon, 13 Oct 2025 12:42:50 +0000 Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit From: =?utf-8?q?Timo_R=C3=B6hling?= <roehling@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: dials: autopkgtest regression with scikit-learn 1.7.2 Message-ID: <176035936826.161829.5837381693155674752.reportbug@roehling3.cms.fkie.fraunhofer.de> X-Mailer: reportbug 13.2.0 Date: Mon, 13 Oct 2025 14:42:48 +0200 X-Debian-User: roehling Delivered-To: submit@bugs.debian.org Source: dials Version: 3.25.0+dfsg3-2 Severity: important User: debian-science@lists.debian.org Usertags: scikit-learn-1.7 -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Dear maintainer, your package has an autopkgtest regression with scikit-learn 1.7.2. Relevant excerpt from https://ci.debian.net/packages/d/dials/unstable/amd64/65190517/ follows: 1210s ____________________________ test_IhTable_freework _____________________________ 1210s 1210s large_reflection_table = <dials_array_family_flex_ext.reflection_table object at 0x7fa84e3c7330> 1210s small_reflection_table = <dials_array_family_flex_ext.reflection_table object at 0x7fa84e3c4fe0> 1210s test_sg = <cctbx_sgtbx_ext.space_group object at 0x7fa84e3c7e70> 1210s 1210s def test_IhTable_freework(large_reflection_table, small_reflection_table, test_sg): 1210s sel1 = flex.bool(7, True) 1210s sel1[6] = False 1210s sel2 = flex.bool(4, True) 1210s sel2[1] = False 1210s 1210s > Ih_table = IhTable( 1210s reflection_tables=[ 1210s large_reflection_table.select(sel1), 1210s small_reflection_table.select(sel2), 1210s ], 1210s indices_lists=[sel1.iselection(), sel2.iselection()], 1210s space_group=test_sg, 1210s nblocks=2, 1210s free_set_percentage=50.0, 1210s ) 1210s 1210s tests/algorithms/scaling/test_Ih_table.py:461: 1210s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1210s /usr/lib/python3/dist-packages/dials/algorithms/scaling/Ih_table.py:132: in __init__ 1210s self.extract_free_set() 1210s /usr/lib/python3/dist-packages/dials/algorithms/scaling/Ih_table.py:438: in extract_free_set 1210s free_block = IhTableBlock( 1210s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1210s 1210s self = <dials.algorithms.scaling.Ih_table.IhTableBlock object at 0x7fa82807f770> 1210s n_groups = 3, n_refl = np.int64(5), n_datasets = 2 1210s 1210s def __init__(self, n_groups: int, n_refl: int, n_datasets: int = 1): 1210s """Create empty datastructures to which data can later be added.""" 1210s self.Ih_table = pd.DataFrame() 1210s self.block_selections = [None] * n_datasets 1210s > self.h_index_matrix = sparse.matrix(n_refl, n_groups) 1210s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1210s E Boost.Python.ArgumentError: Python argument types in 1210s E matrix.__init__(matrix, numpy.int64, int) 1210s E did not match C++ signature: 1210s E __init__(boost::python::api::object, unsigned long rows, unsigned long columns, boost::python::list elements_by_columns) 1210s E __init__(_object*, unsigned long rows, unsigned long columns) 1210s 1210s /usr/lib/python3/dist-packages/dials/algorithms/scaling/Ih_table.py:519: ArgumentError Cheers Timo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEmwPruYMA35fCsSO/zIxr3RQD9MoFAmjs88cACgkQzIxr3RQD 9MraPw/9GTlPXP+UPYb3Djz+iHhdermHSOqdN2rQFOOo+6su78dFtiyEOZppQzFq uuCu5W0pJOmejm55sXCoF/uyfQfqV22fJHoq7PvfSQt0ErfHC+gjryPuxaCwfik9 m2PuReLbgw9Rn0rZTwRcnQWoe/zyTmktvuesB6QLX0VBshODZ3jnClxTRrUdFjRZ 435KB5eSaTga2Sq3QZb/7wbIrkk6GmtKqbgs4a2JpkxBSALluJaFfcfA4k6lMAbx gQpw7tOjw7hdSukQvhmmEy/ILMPsUpjcq8LYOQsNew/+YbQaNHw6vGsEunCRwoJE ktcIEj0trB/upfconADuCZTPPlJoN0izetNgz0rc1D6a96FA44PU+hFnms88thMd V4yTxGHajTVjd5xdWIsgk3RrA8So3GY5h5S2dluKjKDNyQJNlAHJWohVDRTh3mY4 LGy9NzQNEWlOqjLERH8Z5y6AdeEcptVaPjvod0TgMnw87MGgPCAYbZcJD6A48ENJ x6boB8GA55JEQ5hEhXI6CHLv8EqCgJbagH6VzeaAaHXavOETFMpVjWRfGIi5gdVp WuOATrigudus+mYsXGJKhYNlyXEn/wmqg5A7Vfq2E0T1uz8EpR5fAB6kKT89ctHI 14bXnXSe0K19pPYR9HojptNv9pZYGcVp3StEQjqIx3eLijbFgcw= =WOCW -----END PGP SIGNATURE----- ]