[From nobody Fri Aug 7 20:41:08 2026 Received: (at submit) by bugs.debian.org; 10 Jun 2026 09:52:47 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-10.6 required=4.0 tests=BAYES_00,FOURLA, FROMDEVELOPER,FVGT_m_MULTI_ODD,HEADER_FROM_DIFFERENT_DOMAINS, PGPSIGNATURE,SPF_HELO_NONE,SPF_PASS autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 57; hammy, 150; neutral, 153; spammy, 0. spammytokens: hammytokens:0.000-+--HTo:N*Debian, 0.000-+--H*Ad:N*Bug, 0.000-+--H*Ad:N*Tracking, 0.000-+--sk:taint_o, 0.000-+--sk:TAINT_O Return-path: <SRS0=a6bP=EG=debian.org=pini@bou-fi.net> Received: from mail.bou-fi.net ([51.255.91.82]:58540) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_X25519__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <SRS0=a6bP=EG=debian.org=pini@bou-fi.net>) id 1wXFc7-00EdUE-1C for submit@bugs.debian.org; Wed, 10 Jun 2026 09:52:47 +0000 Content-Type: multipart/mixed; boundary="===============3796012403447796998==" Authentication-Results: mail.bou-fi.net; auth=pass smtp.mailfrom=pini@debian.org MIME-Version: 1.0 From: Gilles Filippini <pini@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: dolfin: FTBFS against HDF5 2.1.0 Message-ID: <178108516445.29220.12187798394855404952.reportbug@pinibrem14> Date: Wed, 10 Jun 2026 11:52:44 +0200 X-Spamd-Bar: -- Delivered-To: submit@bugs.debian.org This is a multi-part MIME message sent by reportbug. --===============3796012403447796998== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline Source: dolfin Version: 2019.2.0~legacy20240219.1c52e83-29 Severity: important Tags: ftbfs patch -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Hi, During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0 currently in experimental, dolfin FTBFS because its build toolchain doesn't support this new major release. The attached patch is a workaround for this issue and supports both HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental. Best, _g. - -- System Information: Debian Release: 12.0 Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAmopM+QACgkQ7+hsbH/+ z4MNTAf+KMjTGQ7qeXD9Ep+92OO15VTYPj5a/MXLBw20yKI5HLepQqtlytazubsB 0mz7VPeFiM8ZoQmLcyaW6HW/sAqx/uM52DPhrzsHlG38SR7Zh9eCyou12xNyqOZW SrWPpdvgo5dm5D2/Noxr8i/oc+/bNmWHcdEPR4H06bOL5Bh10234CRcD3aoYpm51 DKmbvbgehVUTt7cVIlMqREtDbGAO+lqul0sjbhrsZF/gQ0mfOQ8MyxBcW4aifFuJ 8TGRqWkz/xMlcbFhbkjhvT3ATn1HM4/LHVl2HFEZj099O3QV2b4BDUc7oJ0app51 mYdz8Pwht0X3Ne3CByRFxQTkdg9RBg== =zK9V -----END PGP SIGNATURE----- --===============3796012403447796998== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="dolfin.debdiff" diff -Nru dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog --- dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog 2026-05-11 10:24:37.000000000 +0200 +++ dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog 2026-06-08 21:04:55.000000000 +0200 @@ -1,3 +1,10 @@ +dolfin (2019.2.0~legacy20240219.1c52e83-29.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Fix FTBFS against HDF5 2.1.0 + + -- Gilles Filippini <pini@debian.org> Mon, 08 Jun 2026 21:04:55 +0200 + dolfin (2019.2.0~legacy20240219.1c52e83-29) unstable; urgency=medium * Add eigen_5_compatibility.patch, which changes the cmake module to find diff -Nru dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules --- dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules 2026-05-02 14:40:33.000000000 +0200 +++ dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules 2026-06-08 21:04:55.000000000 +0200 @@ -1,6 +1,7 @@ #!/usr/bin/make -f include /usr/share/dpkg/architecture.mk +include /usr/share/mpi-default-dev/debian_defaults OS_ID := $(shell grep -E "^ID" /etc/os-release | sed "s/^ID=//") @@ -199,7 +200,8 @@ -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF \ -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF \ -D DOLFIN_ENABLE_HDF5:BOOL=ON \ - -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc \ + -D HDF5_NO_FIND_PACKAGE_CONFIG_FILE:BOOL=ON \ + -D HDF5_ROOT=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL) \ -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF \ -D DOLFIN_ENABLE_SCOTCH:BOOL=ON \ -D DOLFIN_ENABLE_DOCS:BOOL=OFF \ --===============3796012403447796998==-- ]