[From nobody Thu Sep 10 15:13:06 2026 Received: (at submit) by bugs.debian.org; 11 Aug 2026 23:16:26 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-121.3 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER,HAS_PACKAGE, USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 4; hammy, 150; neutral, 97; spammy, 0. spammytokens: hammytokens:0.000-+--python3, 0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--HTo:N*Debian, 0.000-+--forky Return-path: <sanvila@debian.org> Received: from muffat.debian.org ([2607:f8f0:614:1::1274:33]:32874) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wtvhq-00CSmo-18 for submit@bugs.debian.org; Tue, 11 Aug 2026 23:16:26 +0000 Received: via submission from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by muffat.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wtvhr-005MKO-2D for submit@bugs.debian.org; Tue, 11 Aug 2026 23:16:26 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Subject:To:From:Reply-To:Cc: MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=GkvZbBN/aU2aN+cYRKr7qsLZzG0jrYShue0owAMql9U=; b=PUeE8AEju767d80p9Ag82q6PI/ 1369EV/1No+I/d/xAQW5jjJ7w/rg6YSHku4+j63ItGeyqXxU4tWE3fTHo7acxpcvPjlkd24tSmOwl 6DaNmRim+4oudnumjpqz9Qrfu2wY1m9NSeCr8F27xcknRNENfOWmeBB4igc5O78ZAvTeI7LzyeGUq LbZkTH4o+76Wfe5S2tGGhozQV+6cBZbuKNYJIAIlI0/efjY6R6KyHBa+DrWh0iMsy5ZQNZTbVRC1w ga9ClFT4d/PWW0GM+qlqEEAO4Lg4sCfhi46fSipYxULD4K/X4vc8jg+Hz0qJA9a0ZurRBTB81vV+4 IbCT46hQ==; Received: from sanvila by paradis.debian.org with local (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wtvhq-004iRn-0V for submit@bugs.debian.org; Tue, 11 Aug 2026 23:16:26 +0000 From: Santiago Vila <sanvila@debian.org> To: Debian BTS <submit@bugs.debian.org> Subject: promod3: FTBFS: Segmentation fault X-Debbugs-Cc: sanvila@debian.org Message-Id: <E1wtvhq-004iRn-0V@paradis.debian.org> Date: Tue, 11 Aug 2026 23:16:26 +0000 Delivered-To: submit@bugs.debian.org Package: src:promod3 Version: 3.6.0+ds-1 Severity: serious Tags: ftbfs forky sid Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:promod3, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] [ 90%] Generating ../../stage/share/promod3/loop_data/torsion_sampler.dat [ 91%] Generating ../../stage/share/promod3/loop_data/ff_lookup_charmm.dat cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib/python3.14/site-packages/\ /usr/bin/python3\ '/<<PKGBUILDDIR>>/loop/data/convert_binaries.py'\ '/<<PKGBUILDDIR>>/loop/data/portable_ff_lookup_charmm.dat'\ '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/ff_lookup_charmm.dat'\ ForcefieldLookup cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib/python3.14/site-packages/\ /usr/bin/python3\ '/<<PKGBUILDDIR>>/loop/data/convert_binaries.py'\ '/<<PKGBUILDDIR>>/loop/data/portable_torsion_sampler.dat'\ '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler.dat'\ TorsionSampler Segmentation fault make[3]: *** [loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make:78: stage/share/promod3/loop_data/torsion_sampler.dat] Error 139 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:2051: loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... Segmentation fault make[3]: *** [loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make:78: stage/share/promod3/loop_data/ff_lookup_charmm.dat] Error 139 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:2267: loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:139: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]