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[77.11.23.228]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-48af508bb41sm1088431f8f.28.2026.09.28.22.31.54 for <maintonly@bugs.debian.org> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 28 Sep 2026 22:31:54 -0700 (PDT) Sender: Anton Gladky <gladky.anton@gmail.com> Received: by gladklaptop.localdomain (Postfix, from userid 1000) id 72974F22FA5; Tue, 29 Sep 2026 07:31:53 +0200 (CEST) Subject: rdkit: FTBFS with boost 1.92 From: Anton Gladky <gladk@debian.org> To: <maintonly@bugs.debian.org> User-Agent: mail (GNU Mailutils 3.21) Date: Tue, 29 Sep 2026 07:31:53 +0200 Message-Id: <20260929053153.72974F22FA5@gladklaptop.localdomain> Delivered-To: maintonly@bugs.debian.org Package: src:rdkit Version: 202603.4-2 Severity: important Tags: sid forky ftbfs User: debian-devel@lists.debian.org Usertags: boost1.92 Dear Maintainer, Boost 1.92 will most likely be the default boost version in the upcoming Debian 14 (forky) release. rdkit FTBFS with boost 1.92. Note that the FTBFS may not necessarily be connected to boost - please check the build log for the actual cause. boost-defaults pointing to 1.92 is available in experimental, so you can rebuild your package against it to reproduce the failure and test the fix. Note: This ticket severity will be increased to RC bug when boost-defaults is switched to 1.92. If your package depends on versioned boost packages (e.g. libboost1.90-dev), please switch to the unversioned (default) ones (e.g. libboost-dev), so the package follows future boost transitions automatically. Here is the most probably relevant part of the failing build log: ==================== build log ==================== [ 3%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o cd /build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_CONTAINER_DYN_LINK -DBOOST_CONTAINER_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_EXCEPTION_NO_LIB=1 -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_THREAD_USE_DLL -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202603.4/External -I/build/reproducible-path/rdkit -202603.4/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202603.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -MF CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o.d -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/reproducible-path/rdkit-202603.4/Code/DataStructs/testDatastructs.cpp In file included from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9, from /build/reproducible-path/rdkit-202603.4/Code/RDBoost/python.h:5, from /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:10: /usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation of ‘static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = std::__cxx11::list<int>; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, true>; bool NoProxy = true; bool NoSlice = false; Data = int; Index = long unsigned int; Key = int]’: /usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31: required from ‘void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::visit(Class&) const [with Class = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; Container = std::__cxx11::list<int>; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, true>; bool NoProxy = true; bool NoSlice = false; Data = int; Index = long unsigned int; Key = int]’ 187 | .def("clear", &base_clear) | ^~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<int>, boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, true>, true, false, int, long unsigned int, int> >; classT = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::indexing_suite<std::__cxx11::list<int>, boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, true>, true, false, int, long unsigned int, int>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::indexing_suite<std::__cxx11::list<int>, boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, true>, true, false, int, long unsigned int, int>; W = std::__cxx11::list<int>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:125:13: required from ‘void RegisterListConverter(bool) [with T = int]’ 124 | python::class_<std::list<T>>(name.c_str()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def(python::list_indexing_suite<std::list<T>, 1>()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:360:29: required from here 360 | RegisterListConverter<int>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: ‘clear’ is not a member of ‘boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, true>’ 296 | return DerivedPolicies::clear(container); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation of ‘static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = std::__cxx11::list<int>; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, false>; bool NoProxy = false; bool NoSlice = false; Data = int; Index = long unsigned int; Key = int]’: /usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31: required from ‘void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::visit(Class&) const [with Class = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; Container = std::__cxx11::list<int>; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, false>; bool NoProxy = false; bool NoSlice = false; Data = int; Index = long unsigned int; Key = int]’ 187 | .def("clear", &base_clear) | ^~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<int>, boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, false>, false, false, int, long unsigned int, int> >; classT = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::indexing_suite<std::__cxx11::list<int>, boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, false>, false, false, int, long unsigned int, int>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::indexing_suite<std::__cxx11::list<int>, boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, false>, false, false, int, long unsigned int, int>; W = std::__cxx11::list<int>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<std::__cxx11::list<int>, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:128:13: required from ‘void RegisterListConverter(bool) [with T = int]’ 127 | python::class_<std::list<T>>(name.c_str()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def(python::list_indexing_suite<std::list<T>>()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:360:29: required from here 360 | RegisterListConverter<int>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: ‘clear’ is not a member of ‘boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, false>’ 296 | return DerivedPolicies::clear(container); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation of ‘static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = std::__cxx11::list<std::vector<int> >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = std::vector<int>; Index = long unsigned int; Key = std::vector<int>]’: /usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31: required from ‘void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::visit(Class&) const [with Class = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; Container = std::__cxx11::list<std::vector<int> >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, true>; bool NoProxy = true; bool NoSlice = false; Data = std::vector<int>; Index = long unsigned int; Key = std::vector<int>]’ 187 | .def("clear", &base_clear) | ^~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, true>, true, false, std::vector<int>, long unsigned int, std::vector<int> > >; classT = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, true>, true, false, std::vector<int>, long unsigned int, std::vector<int> >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, true>, true, false, std::vector<int>, long unsigned int, std::vector<int> >; W = std::__cxx11::list<std::vector<int> >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:125:13: required from ‘void RegisterListConverter(bool) [with T = std::vector<int>]’ 124 | python::class_<std::list<T>>(name.c_str()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def(python::list_indexing_suite<std::list<T>, 1>()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:361:42: required from here 361 | RegisterListConverter<std::vector<int>>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: ‘clear’ is not a member of ‘boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, true>’ 296 | return DerivedPolicies::clear(container); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation of ‘static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = std::__cxx11::list<std::vector<int> >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = std::vector<int>; Index = long unsigned int; Key = std::vector<int>]’: /usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31: required from ‘void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::visit(Class&) const [with Class = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; Container = std::__cxx11::list<std::vector<int> >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, false>; bool NoProxy = false; bool NoSlice = false; Data = std::vector<int>; Index = long unsigned int; Key = std::vector<int>]’ 187 | .def("clear", &base_clear) | ^~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, false>, false, false, std::vector<int>, long unsigned int, std::vector<int> > >; classT = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, false>, false, false, std::vector<int>, long unsigned int, std::vector<int> >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, false>, false, false, std::vector<int>, long unsigned int, std::vector<int> >; W = std::__cxx11::list<std::vector<int> >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<std::__cxx11::list<std::vector<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:128:13: required from ‘void RegisterListConverter(bool) [with T = std::vector<int>]’ 127 | python::class_<std::list<T>>(name.c_str()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def(python::list_indexing_suite<std::list<T>>()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:361:42: required from here 361 | RegisterListConverter<std::vector<int>>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: ‘clear’ is not a member of ‘boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int> >, false>’ 296 | return DerivedPolicies::clear(container); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation of ‘static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, true>; bool NoProxy = true; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long unsigned int; Key = std::vector<unsigned int>]’: /usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31: required from ‘void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::visit(Class&) const [with Class = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; Container = std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, true>; bool NoProxy = true; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long unsigned int; Key = std::vector<unsigned int>]’ 187 | .def("clear", &base_clear) | ^~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, true>, true, false, std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> > >; classT = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, true>, true, false, std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, true>, true, false, std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >; W = std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost:: python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:125:13: required from ‘void RegisterListConverter(bool) [with T = std::vector<unsigned int>]’ 124 | python::class_<std::list<T>>(name.c_str()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def(python::list_indexing_suite<std::list<T>, 1>()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:362:51: required from here 362 | RegisterListConverter<std::vector<unsigned int>>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: ‘clear’ is not a member of ‘boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, true>’ 296 | return DerivedPolicies::clear(container); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation of ‘static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, false>; bool NoProxy = false; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long unsigned int; Key = std::vector<unsigned int>]’: /usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31: required from ‘void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::visit(Class&) const [with Class = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; Container = std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >; DerivedPolicies = boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, false>; bool NoProxy = false; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long unsigned int; Key = std::vector<unsigned int>]’ 187 | .def("clear", &base_clear) | ^~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, false>, false, false, std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> > >; classT = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, false>, false, false, std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, false>, false, false, std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >; W = std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost ::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:128:13: required from ‘void RegisterListConverter(bool) [with T = std::vector<unsigned int>]’ 127 | python::class_<std::list<T>>(name.c_str()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def(python::list_indexing_suite<std::list<T>>()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:362:51: required from here 362 | RegisterListConverter<std::vector<unsigned int>>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: ‘clear’ is not a member of ‘boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned int>, std::allocator<std::vector<unsigned int> > >, false>’ 296 | return DerivedPolicies::clear(container); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[4]: *** [Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make:82: Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o] Error 1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:5344: Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 3%] Linking CXX executable testDataStructs cd /build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202603.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDataStructs.dir/link.d CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../RDGeneral/librdkitCatch.a ../../lib/libRDKitDataStructs.so.1.2026.03.4 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeneral.so.1.2026.03.4 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_container.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_excep tion.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.92.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.92.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu' [ 3%] Built target testDataStructs make[3]: Leaving directory '/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:103: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/reproducible-path/rdkit-202603.4' make: *** [debian/rules:49: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 ==================== end of build log ============= Thanks, Anton Gladky ]