[Neurodebian-users] FSL cluster error

[jian hou]

Thank you Morgan and Yaroslav!
The solutions you provide both works well and I really appreciate it!
Best regards,
Jian Hou








At 2015-12-11 22:27:57, "Yaroslav Halchenko" <debian at onerussian.com> wrote:
>Thank you Morgan -- you are completely right about this collision with
>graphviz
>
>unfortunately it would require a fix up of the fsl.sh we ship, where we
>append and not prepend FSL_DIR/bin to the PATH.  As a quick remedy you can do
>
>source /etc/fsl/fsl.sh; export PATH=$FSLDIR/bin:$PATH
>
>P.S. watch out for https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804881 to
>be closed ;)
>
>On Thu, 10 Dec 2015, Morgan Hough wrote:
>
>> Hi Jian Hou,
>
>> It looks like you have cluster from graphviz higher up in your PATH. Check
>> "which cluster" to see which binary you are calling and "echo $PATH" to see how
>> your path is configured. Hope that helps. 
>
>> Cheers,
>
>> -Morgan
>
>> On Thu, Dec 10, 2015 at 5:08 PM, jian hou <[1]jianhou_nj at 126.com> wrote:
>
>>     Hi all,
>>     I performed a nonparametric 1-sample t-test (randomise -i my4Dfile -o
>>     OneSampT -1 -T) and then reported cluster results using the following
>>     command:
>>     cluster -i OneSampT_corrp_tstat1 -t 0.95 -mm
>>     However, I got an error which read:
>>     ~~~~~~
>>     option -i unrecognized - ignored
>>     Usage: cluster <options> graphfile
>>         -C k - generate no more than k clusters (0)
>>            0 : no limit
>>         -c k - use clustering method k (0)
>>            0 : use modularity
>>            1 : use modularity quality
>>         -o <outfile> - output file (stdout)
>>         -v   - verbose mode
>>         -?   - print usage
>>     ~~~~~~
>>     Could you please guide me how can I fix my problem?
>>     Thanks in advance.
>>     Cheers,
>>     Jian Hou
>
>
>
>>      
>
>
>>     _______________________________________________
>>     Neurodebian-users mailing list
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>>     neurodebian-users
>
>
>
>> References:
>
>> [1] mailto:jianhou_nj at 126.com
>> [2] mailto:Neurodebian-users at lists.alioth.debian.org
>> [3] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
>
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>
>
>-- 
>Yaroslav O. Halchenko
>Center for Open Neuroscience     http://centerforopenneuroscience.org
>Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
>Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
>WWW:   http://www.linkedin.com/in/yarik        
>
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