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<h3>
Bas Couwenberg pushed to branch upstream
at <a href="https://salsa.debian.org/debian-gis-team/netcdf4-python">Debian GIS Project / netcdf4-python</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce">55ffe800</a></strong>
<div>
<span>by Bas Couwenberg</span>
<i>at 2020-12-07T05:46:00+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.5.5</pre>
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<h4>7 changed files:</h4>
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<li class="file-stats">
<a href="#6156cd6ac57d8b88e473d9202392ec064b623c93">
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−
COPYING
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<li class="file-stats">
<a href="#164b3d4809f98d0458414f1bf9cf3c9dcba16bb5">
Changelog
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<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
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+
LICENSE
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#41707387fbcad1abbfca1a8a8a619d2bceb9ac90">
docs/netCDF4/index.html
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<li class="file-stats">
<a href="#3d2c74e73145075ffb254500b1a870de8f5123c9">
netCDF4/_netCDF4.pyx
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<h4>Changes:</h4>
<li id="6156cd6ac57d8b88e473d9202392ec064b623c93">
<a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce#6156cd6ac57d8b88e473d9202392ec064b623c93"><strong>COPYING</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">copyright: 2008 by Jeffrey Whitaker.</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Permission to use, copy, modify, and distribute this software and</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">its documentation for any purpose and without fee is hereby granted,</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">provided that the above copyright notice appear in all copies and that</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">both the copyright notice and this permission notice appear in</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">supporting documentation.</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE,</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, INDIRECT OR</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">PERFORMANCE OF THIS SOFTWARE.</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">The above copyright notice and this permission notice shall be included</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">in all copies or substantial portions of the Software.</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.</span>
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<a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce#164b3d4809f98d0458414f1bf9cf3c9dcba16bb5"><strong>Changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"> version 1.5.5 (tag v1.5.5rel)</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">==============================</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * have setup.py always try use nc-config first to find paths to netcdf and</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> hdf5 libraries and headers. Don't use pkg-config to find HDF5 if HDF5 env</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> vars are set (or read from setup.cfg).</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Change MIT license text to standard OSI wording (PR #1046).</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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1
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> version 1.5.4 (tag v1.5.4rel)</span>
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2
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">==============================</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * fix printing of variable objects for variables that end with the letter 'u'</span>
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<a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce#0398ccd0f49298b10a3d76a47800d2ebecd49859"><strong>LICENSE</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Copyright 2008 Jeffrey Whitaker</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.</span></pre>
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<a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,8 @@</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## News</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="markdown">For details on the latest updates, see the <span class="p">[</span><span class="nv" style="color: #008080;">Changelog</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/Unidata/netcdf4-python/blob/master/Changelog</span><span class="p">)</span>.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="markdown">12/01/2020: Version <span class="p">[</span><span class="nv" style="color: #008080;">1.5.5</span><span class="p">](</span><span class="sx" style="color: #d14;">https://pypi.python.org/pypi/netCDF4/1.5.5</span><span class="p">)</span> released]. Update license wording to be consistent with MIT license. </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="markdown">07/23/2020: Version <span class="p">[</span><span class="nv" style="color: #008080;">1.5.4</span><span class="p">](</span><span class="sx" style="color: #d14;">https://pypi.python.org/pypi/netCDF4/1.5.4</span><span class="p">)</span> released]. Now requires </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="markdown">numpy >= 1.9.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="html"> <span class="nt" style="color: #000080;"><meta</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"viewport"</span> <span class="na" style="color: #008080;">content=</span><span class="s" style="color: #d14;">"width=device-width, initial-scale=1, minimum-scale=1"</span> <span class="nt" style="color: #000080;">/></span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="html"> <span class="nt" style="color: #000080;"><title></span>netCDF4 API documentation<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="html"> <span class="nt" style="color: #000080;"><meta</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"description"</span> <span class="na" style="color: #008080;">content=</span><span class="s" style="color: #d14;">"Version 1.5.<span class="idiff left right">4</span></span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="html"> <span class="nt" style="color: #000080;"><meta</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"description"</span> <span class="na" style="color: #008080;">content=</span><span class="s" style="color: #d14;">"Version 1.5.<span class="idiff left right">5</span></span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="html"><span class="s" style="color: #d14;">---------------</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="html"><span class="s" style="color: #d14;">- - -</span></span>
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<pre style="margin: 0;"> <span id="LC1283" class="line" lang="html"> <span class="nt" style="color: #000080;"><header</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"section-intro"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;"> <span id="LC1284" class="line" lang="html"> <span class="nt" style="color: #000080;"><h1</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"title"</span><span class="nt" style="color: #000080;">><span</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"name"</span><span class="nt" style="color: #000080;">></span>netCDF4<span class="nt" style="color: #000080;"></span></span> module<span class="nt" style="color: #000080;"></h1></span></span>
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<pre style="margin: 0;">-<span id="LC1285" class="line" lang="html"> <span class="nt" style="color: #000080;"><h2></span>Version 1.5.<span class="idiff left right">4</span><span class="nt" style="color: #000080;"></h2></span></span>
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<pre style="margin: 0;">+<span id="LC1285" class="line" lang="html"> <span class="nt" style="color: #000080;"><h2></span>Version 1.5.<span class="idiff left right">5</span><span class="nt" style="color: #000080;"></h2></span></span>
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<pre style="margin: 0;"> <span id="LC1287" class="line" lang="html"><span class="nt" style="color: #000080;"><h1></span>Introduction<span class="nt" style="color: #000080;"></h1></span></span>
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<pre style="margin: 0;"> <span id="LC1288" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>netcdf4-python is a Python interface to the netCDF C library.<span class="nt" style="color: #000080;"></p></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1347,25 +1347,24 @@ types) are not supported.</p></td>
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<pre style="margin: 0;"> <span id="LC1347" class="line" lang="html"> easiest if all the C libs are built as shared libraries.<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;"> <span id="LC1348" class="line" lang="html"><span class="nt" style="color: #000080;"><li></span>By default, the utility <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span>, installed with netcdf 4.1.2 or higher,</span>
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<pre style="margin: 0;"> <span id="LC1349" class="line" lang="html"> will be run used to determine where all the dependencies live.<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;">-<span id="LC1350" class="line" lang="html"><span class="nt" style="color: #000080;"><li></span>If <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span> is not in your default <span class="nt" style="color: #000080;"><code></span>$PATH<span class="nt" style="color: #000080;"></code></span></span>
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<pre style="margin: 0;">-<span id="LC1351" class="line" lang="html"> edit the <span class="nt" style="color: #000080;"><code></span>setup.cfg<span class="nt" style="color: #000080;"></code></span> file</span>
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<pre style="margin: 0;">+<span id="LC1350" class="line" lang="html"><span class="nt" style="color: #000080;"><li></span>If <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span> is not in your default <span class="nt" style="color: #000080;"><code></span>PATH<span class="nt" style="color: #000080;"></code></span>, you can set the <span class="nt" style="color: #000080;"><code></span>NETCDF4_DIR<span class="nt" style="color: #000080;"></code></span></span>
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<pre style="margin: 0;">+<span id="LC1351" class="line" lang="html"> environment variable and <span class="nt" style="color: #000080;"><code></span>setup.py<span class="nt" style="color: #000080;"></code></span> will look in <span class="nt" style="color: #000080;"><code></span>$NETCDF4_DIR/bin<span class="nt" style="color: #000080;"></code></span>.</span>
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<pre style="margin: 0;">+<span id="LC1352" class="line" lang="html"> You can also use the file <span class="nt" style="color: #000080;"><code></span>setup.cfg<span class="nt" style="color: #000080;"></code></span> to set the path to <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span>, or</span>
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<pre style="margin: 0;">+<span id="LC1353" class="line" lang="html"> enter the paths to the libraries and include files manually. Just edit the <span class="nt" style="color: #000080;"><code></span>setup.cfg<span class="nt" style="color: #000080;"></code></span> file</span>
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<pre style="margin: 0;"> <span id="LC1354" class="line" lang="html"> in a text editor and follow the instructions in the comments.</span>
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<pre style="margin: 0;">-<span id="LC1353" class="line" lang="html"> In addition to specifying the path to <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span>,</span>
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<pre style="margin: 0;">-<span id="LC1354" class="line" lang="html"> you can manually set the paths to all the libraries and their include files</span>
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<pre style="margin: 0;">-<span id="LC1355" class="line" lang="html"> (in case <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span> does not do the right thing).<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;">-<span id="LC1356" class="line" lang="html"><span class="nt" style="color: #000080;"><li></span>run <span class="nt" style="color: #000080;"><code></span>python setup.py build<span class="nt" style="color: #000080;"></code></span>, then <span class="nt" style="color: #000080;"><code></span>python setup.py install<span class="nt" style="color: #000080;"></code></span> (as root if</span>
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<pre style="margin: 0;">-<span id="LC1357" class="line" lang="html"> necessary).<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;">-<span id="LC1358" class="line" lang="html"><span class="nt" style="color: #000080;"><li><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"https://pip.pypa.io/en/latest/reference/pip_install.html"</span><span class="nt" style="color: #000080;">><code></span>pip install<span class="nt" style="color: #000080;"></code></a></span> can</span>
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<pre style="margin: 0;">-<span id="LC1359" class="line" lang="html"> also be used, with library paths set with environment variables. To make</span>
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<pre style="margin: 0;">-<span id="LC1360" class="line" lang="html"> this work, the <span class="nt" style="color: #000080;"><code></span>USE_SETUPCFG<span class="nt" style="color: #000080;"></code></span> environment variable must be used to tell</span>
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<pre style="margin: 0;">-<span id="LC1361" class="line" lang="html"> setup.py not to use <span class="nt" style="color: #000080;"><code></span>setup.cfg<span class="nt" style="color: #000080;"></code></span>.</span>
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<pre style="margin: 0;">-<span id="LC1362" class="line" lang="html"> For example, <span class="nt" style="color: #000080;"><code></span>USE_SETUPCFG=0 HDF5_INCDIR=/usr/include/hdf5/serial</span>
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<pre style="margin: 0;">-<span id="LC1363" class="line" lang="html"> HDF5_LIBDIR=/usr/lib/x86_64-linux-gnu/hdf5/serial pip install<span class="nt" style="color: #000080;"></code></span> has been</span>
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<pre style="margin: 0;">-<span id="LC1364" class="line" lang="html"> shown to work on an Ubuntu/Debian linux system. Similarly, environment variables</span>
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<pre style="margin: 0;">+<span id="LC1355" class="line" lang="html"> To disable the use of <span class="nt" style="color: #000080;"><code></span>nc-config<span class="nt" style="color: #000080;"></code></span>, set the env var <span class="nt" style="color: #000080;"><code></span>USE_NCCONFIG<span class="nt" style="color: #000080;"></code></span> to 0.</span>
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<pre style="margin: 0;">+<span id="LC1356" class="line" lang="html"> To disable the use of <span class="nt" style="color: #000080;"><code></span>setup.cfg<span class="nt" style="color: #000080;"></code></span>, set <span class="nt" style="color: #000080;"><code></span>USE_SETUPCFG<span class="nt" style="color: #000080;"></code></span> to 0.</span>
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1357
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<pre style="margin: 0;">+<span id="LC1357" class="line" lang="html"> As a last resort, the library and include paths can be set via environment variables.</span>
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<pre style="margin: 0;">+<span id="LC1358" class="line" lang="html"> If you go this route, set <span class="nt" style="color: #000080;"><code></span>USE_NCCONFIG<span class="nt" style="color: #000080;"></code></span> and <span class="nt" style="color: #000080;"><code></span>USE_SETUPCFG<span class="nt" style="color: #000080;"></code></span> to 0, and specify</span>
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<pre style="margin: 0;">+<span id="LC1359" class="line" lang="html"> <span class="nt" style="color: #000080;"><code></span>NETCDF4_LIBDIR<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>NETCDF4_INCDIR<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>HDF5_LIBDIR<span class="nt" style="color: #000080;"></code></span> and <span class="nt" style="color: #000080;"><code></span>HDF5_INCDIR<span class="nt" style="color: #000080;"></code></span>.</span>
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<pre style="margin: 0;">+<span id="LC1360" class="line" lang="html"> Similarly, environment variables</span>
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1365
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<pre style="margin: 0;"> <span id="LC1361" class="line" lang="html"> (all capitalized) can be used to set the include and library paths for</span>
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1366
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<pre style="margin: 0;">-<span id="LC1366" class="line" lang="html"> <span class="nt" style="color: #000080;"><code></span>hdf5<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>netCDF4<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>hdf4<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>szip<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>jpeg<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>curl<span class="nt" style="color: #000080;"></code></span> and <span class="nt" style="color: #000080;"><code></span>zlib<span class="nt" style="color: #000080;"></code></span>. If the</span>
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1367
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<pre style="margin: 0;">-<span id="LC1367" class="line" lang="html"> libraries are installed in standard places (e.g. <span class="nt" style="color: #000080;"><code></span>/usr<span class="nt" style="color: #000080;"></code></span> or <span class="nt" style="color: #000080;"><code></span>/usr/local<span class="nt" style="color: #000080;"></code></span>),</span>
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<pre style="margin: 0;">-<span id="LC1368" class="line" lang="html"> the environment variables do not need to be set.<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;">+<span id="LC1362" class="line" lang="html"> <span class="nt" style="color: #000080;"><code></span>hdf4<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>szip<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>jpeg<span class="nt" style="color: #000080;"></code></span>, <span class="nt" style="color: #000080;"><code></span>curl<span class="nt" style="color: #000080;"></code></span> and <span class="nt" style="color: #000080;"><code></span>zlib<span class="nt" style="color: #000080;"></code></span>. If the dependencies are not found</span>
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<pre style="margin: 0;">+<span id="LC1363" class="line" lang="html"> in any of the paths specified by environment variables, then standard locations</span>
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<pre style="margin: 0;">+<span id="LC1364" class="line" lang="html"> (such as <span class="nt" style="color: #000080;"><code></span>/usr<span class="nt" style="color: #000080;"></code></span> and <span class="nt" style="color: #000080;"><code></span>/usr/local<span class="nt" style="color: #000080;"></code></span>) are searched.<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;">+<span id="LC1365" class="line" lang="html"><span class="nt" style="color: #000080;"><li></span>run <span class="nt" style="color: #000080;"><code></span>python setup.py build<span class="nt" style="color: #000080;"></code></span>, then <span class="nt" style="color: #000080;"><code></span>python setup.py install<span class="nt" style="color: #000080;"></code></span> (as root if</span>
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1366
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<pre style="margin: 0;">+<span id="LC1366" class="line" lang="html"> necessary). <span class="nt" style="color: #000080;"><code></span>pip install<span class="nt" style="color: #000080;"></code></span> can be used to install pre-compiled binary wheels from </span>
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1367
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<pre style="margin: 0;">+<span id="LC1367" class="line" lang="html"> <span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"https://pypi.org/project/netCDF4"</span><span class="nt" style="color: #000080;">></span>pypi<span class="nt" style="color: #000080;"></a></span>.<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;"> <span id="LC1368" class="line" lang="html"><span class="nt" style="color: #000080;"><li></span>run the tests in the 'test' directory by running <span class="nt" style="color: #000080;"><code></span>python run_all.py<span class="nt" style="color: #000080;"></code></span>.<span class="nt" style="color: #000080;"></li></span></span>
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<pre style="margin: 0;"> <span id="LC1369" class="line" lang="html"><span class="nt" style="color: #000080;"></ul></span></span>
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<pre style="margin: 0;"> <span id="LC1370" class="line" lang="html"><span class="nt" style="color: #000080;"><h1></span>Tutorial<span class="nt" style="color: #000080;"></h1></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2450,23 +2449,23 @@ returned.</p></td>
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<pre style="margin: 0;"> <span id="LC2449" class="line" lang="html"> </span>
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<pre style="margin: 0;"> <span id="LC2450" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"desc"</span><span class="nt" style="color: #000080;">><p></span>date2index(dates, nctime, calendar=None, select='exact')<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;"> <span id="LC2451" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>Return indices of a netCDF time variable corresponding to the given dates.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2453" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">dates</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: A datetime object or a sequence of datetime objects.</span>
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<pre style="margin: 0;">+<span id="LC2452" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">dates</span><span class="nt" style="color: #000080;"></strong></span>: A datetime object or a sequence of datetime objects.</span>
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<pre style="margin: 0;"> <span id="LC2453" class="line" lang="html">The datetime objects should not include a time-zone offset.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2455" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">nctime</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: A netCDF time variable object. The nctime object must have a</span>
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<pre style="margin: 0;">-<span id="LC2456" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> attribute.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2457" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: describes the calendar used in the time calculations.</span>
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<pre style="margin: 0;">+<span id="LC2454" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">nctime</span><span class="nt" style="color: #000080;"></strong></span>: A netCDF time variable object. The nctime object must have a</span>
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<pre style="margin: 0;">+<span id="LC2455" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> attribute.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2456" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">calendar</span><span class="nt" style="color: #000080;"></strong></span>: describes the calendar used in the time calculations.</span>
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<pre style="margin: 0;"> <span id="LC2457" class="line" lang="html">All the values currently defined in the</span>
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<pre style="margin: 0;"> <span id="LC2458" class="line" lang="html"><span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"http://cfconventions.org"</span><span class="nt" style="color: #000080;">></span>CF metadata convention<span class="nt" style="color: #000080;"></a></span></span>
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<pre style="margin: 0;">-<span id="LC2460" class="line" lang="html">Valid calendars <span class="nt" style="color: #000080;"><<span class="idiff left right">code</span>></span>'standard', 'gregorian', 'proleptic_gregorian'</span>
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2461
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<pre style="margin: 0;">-<span id="LC2461" class="line" lang="html">'noleap', '365_day', '360_day', 'julian', 'all_leap', '366_day'<span class="nt" style="color: #000080;"></<span class="idiff left right">code</span>></span>.</span>
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<pre style="margin: 0;">-<span id="LC2462" class="line" lang="html">Default is <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">'standard'</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span>, which is a mixed Julian/Gregorian calendar.</span>
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<pre style="margin: 0;">-<span id="LC2463" class="line" lang="html">If <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff"></code></span></span><span class="idiff"> is None, its value is given by </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="idiff">nctime.calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> or</span>
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2464
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<pre style="margin: 0;">-<span id="LC2464" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">standard</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> if no such attribute exists.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2465" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">select</span><span class="nt" style="color: #000080;"><span class="idiff"></code></strong></span></span><span class="idiff">: </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="idiff">'exact', 'before', 'after', 'nearest'</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span></span>
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2466
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<pre style="margin: 0;">-<span id="LC2466" class="line" lang="html">The index selection method. <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">exact</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> will return the indices perfectly</span>
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2467
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<pre style="margin: 0;">-<span id="LC2467" class="line" lang="html">matching the dates given. <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">before</span><span class="nt" style="color: #000080;"><span class="idiff"></code></span></span><span class="idiff"> and </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="idiff">after</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> will return the indices</span>
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<pre style="margin: 0;">+<span id="LC2459" class="line" lang="html">Valid calendars <span class="nt" style="color: #000080;"><<span class="idiff left right">strong</span>></span>'standard', 'gregorian', 'proleptic_gregorian'</span>
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2460
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<pre style="margin: 0;">+<span id="LC2460" class="line" lang="html">'noleap', '365_day', '360_day', 'julian', 'all_leap', '366_day'<span class="nt" style="color: #000080;"></<span class="idiff left right">strong</span>></span>.</span>
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2461
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<pre style="margin: 0;">+<span id="LC2461" class="line" lang="html">Default is <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">'standard'</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span>, which is a mixed Julian/Gregorian calendar.</span>
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2462
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<pre style="margin: 0;">+<span id="LC2462" class="line" lang="html">If <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff"> is None, its value is given by </span><span class="nt" style="color: #000080;"><span class="idiff"><strong></span></span><span class="idiff">nctime.calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> or</span>
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2463
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<pre style="margin: 0;">+<span id="LC2463" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">standard</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> if no such attribute exists.<span class="nt" style="color: #000080;"></p></span></span>
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2464
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<pre style="margin: 0;">+<span id="LC2464" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left">select</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff">: </span><span class="nt" style="color: #000080;"><span class="idiff"><strong></span></span><span class="idiff">'exact', 'before', 'after', 'nearest'</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span></span>
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2465
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<pre style="margin: 0;">+<span id="LC2465" class="line" lang="html">The index selection method. <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">exact</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> will return the indices perfectly</span>
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2466
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<pre style="margin: 0;">+<span id="LC2466" class="line" lang="html">matching the dates given. <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">before</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff"> and </span><span class="nt" style="color: #000080;"><span class="idiff"><strong></span></span><span class="idiff">after</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> will return the indices</span>
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2468
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2467
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<pre style="margin: 0;"> <span id="LC2467" class="line" lang="html">corresponding to the dates just before or just after the given dates if</span>
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2469
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<pre style="margin: 0;">-<span id="LC2469" class="line" lang="html">an exact match cannot be found. <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">nearest</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> will return the indices that</span>
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2468
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<pre style="margin: 0;">+<span id="LC2468" class="line" lang="html">an exact match cannot be found. <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">nearest</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> will return the indices that</span>
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2470
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<pre style="margin: 0;"> <span id="LC2469" class="line" lang="html">correspond to the closest dates.<span class="nt" style="color: #000080;"></p></span></span>
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2471
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2470
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<pre style="margin: 0;"> <span id="LC2470" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>returns an index (indices) of the netCDF time variable corresponding</span>
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2472
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2471
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<pre style="margin: 0;"> <span id="LC2471" class="line" lang="html">to the given datetime object(s).<span class="nt" style="color: #000080;"></p></div></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2484,27 +2483,30 @@ to the given datetime object(s).</p></div></td>
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2484
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2483
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<pre style="margin: 0;"> <span id="LC2483" class="line" lang="html"></span>
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2484
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<pre style="margin: 0;"> <span id="LC2484" class="line" lang="html"> </span>
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<pre style="margin: 0;"> <span id="LC2485" class="line" lang="html"> </span>
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2487
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<pre style="margin: 0;">-<span id="LC2487" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"desc"</span><span class="nt" style="color: #000080;">><p></span>date2num(dates,<span class="idiff left right">units,calendar='standard'</span>)<span class="nt" style="color: #000080;"></p></span></span>
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2486
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<pre style="margin: 0;">+<span id="LC2486" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"desc"</span><span class="nt" style="color: #000080;">><p></span>date2num(dates,<span class="idiff left right"> units, calendar=None</span>)<span class="nt" style="color: #000080;"></p></span></span>
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2487
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<pre style="margin: 0;"> <span id="LC2487" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>Return numeric time values given datetime objects. The units</span>
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<pre style="margin: 0;">-<span id="LC2489" class="line" lang="html">of the numeric time values are described by the <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> argument</span>
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<pre style="margin: 0;">-<span id="LC2490" class="line" lang="html">and the <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> keyword. The datetime objects must</span>
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<pre style="margin: 0;">+<span id="LC2488" class="line" lang="html">of the numeric time values are described by the <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> argument</span>
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<pre style="margin: 0;">+<span id="LC2489" class="line" lang="html">and the <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> keyword. The datetime objects must</span>
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<pre style="margin: 0;"> <span id="LC2490" class="line" lang="html">be in UTC with no time-zone offset. If there is a</span>
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<pre style="margin: 0;">-<span id="LC2492" class="line" lang="html">time-zone offset in <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span>, it will be applied to the</span>
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<pre style="margin: 0;">+<span id="LC2491" class="line" lang="html">time-zone offset in <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span>, it will be applied to the</span>
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<pre style="margin: 0;"> <span id="LC2492" class="line" lang="html">returned numeric values.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2494" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><code></span>dates<span class="nt" style="color: #000080;"></code></strong></span>: A datetime object or a sequence of datetime objects.</span>
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<pre style="margin: 0;">-<span id="LC2495" class="line" lang="html">The datetime objects should not include a time-zone offset.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2496" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><code></span>units<span class="nt" style="color: #000080;"></code></strong></span>: a string of the form <span class="nt" style="color: #000080;"><code></span><span class="ni" style="color: #800080;"><</span>time units<span class="ni" style="color: #800080;">></span> since <span class="ni" style="color: #800080;"><</span>reference time<span class="ni" style="color: #800080;">></span><span class="nt" style="color: #000080;"></code></span></span>
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<pre style="margin: 0;">-<span id="LC2497" class="line" lang="html">describing the time units. <span class="nt" style="color: #000080;"><code></span><span class="ni" style="color: #800080;"><</span>time units<span class="ni" style="color: #800080;">></span><span class="nt" style="color: #000080;"></code></span> can be days, hours, minutes,</span>
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<pre style="margin: 0;">-<span id="LC2498" class="line" lang="html">seconds, milliseconds or microseconds. <span class="nt" style="color: #000080;"><code></span><span class="ni" style="color: #800080;"><</span>reference time<span class="ni" style="color: #800080;">></span><span class="nt" style="color: #000080;"></code></span> is the time</span>
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<pre style="margin: 0;">-<span id="LC2499" class="line" lang="html">origin. <span class="nt" style="color: #000080;"><code></span>months_since<span class="nt" style="color: #000080;"></code></span> is allowed <span class="nt" style="color: #000080;"><em></span>only<span class="nt" style="color: #000080;"></em></span> for the <span class="nt" style="color: #000080;"><code></span>360_day<span class="nt" style="color: #000080;"></code></span> calendar.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2500" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><code></span>calendar<span class="nt" style="color: #000080;"></code></strong></span>: describes the calendar used in the time calculations.</span>
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<pre style="margin: 0;">+<span id="LC2493" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span>dates<span class="nt" style="color: #000080;"></strong></span>: A datetime object or a sequence of datetime objects.</span>
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<pre style="margin: 0;">+<span id="LC2494" class="line" lang="html">The datetime objects should not include a time-zone offset. They</span>
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<pre style="margin: 0;">+<span id="LC2495" class="line" lang="html">can be either native python datetime instances (which use</span>
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<pre style="margin: 0;">+<span id="LC2496" class="line" lang="html">the proleptic gregorian calendar) or cftime.datetime instances.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2497" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span>units<span class="nt" style="color: #000080;"></strong></span>: a string of the form <span class="nt" style="color: #000080;"><strong><time</span> <span class="na" style="color: #008080;">units</span><span class="nt" style="color: #000080;">></span> since <span class="nt" style="color: #000080;"><reference</span> <span class="na" style="color: #008080;">time</span><span class="nt" style="color: #000080;">></strong></span></span>
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<pre style="margin: 0;">+<span id="LC2498" class="line" lang="html">describing the time units. <span class="nt" style="color: #000080;"><strong><time</span> <span class="na" style="color: #008080;">units</span><span class="nt" style="color: #000080;">></strong></span> can be days, hours, minutes,</span>
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<pre style="margin: 0;">+<span id="LC2499" class="line" lang="html">seconds, milliseconds or microseconds. <span class="nt" style="color: #000080;"><strong><reference</span> <span class="na" style="color: #008080;">time</span><span class="nt" style="color: #000080;">></strong></span> is the time</span>
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<pre style="margin: 0;">+<span id="LC2500" class="line" lang="html">origin. <span class="nt" style="color: #000080;"><strong></span>months_since<span class="nt" style="color: #000080;"></strong></span> is allowed <span class="nt" style="color: #000080;"><em></span>only<span class="nt" style="color: #000080;"></em></span> for the <span class="nt" style="color: #000080;"><strong></span>360_day<span class="nt" style="color: #000080;"></strong></span> calendar.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2501" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span>calendar<span class="nt" style="color: #000080;"></strong></span>: describes the calendar to be used in the time calculations.</span>
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<pre style="margin: 0;"> <span id="LC2502" class="line" lang="html">All the values currently defined in the</span>
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<pre style="margin: 0;"> <span id="LC2503" class="line" lang="html"><span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"http://cfconventions.org"</span><span class="nt" style="color: #000080;">></span>CF metadata convention<span class="nt" style="color: #000080;"></a></span></span>
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<pre style="margin: 0;">-<span id="LC2503" class="line" lang="html">Valid calendars <span class="nt" style="color: #000080;"><code></span>'standard', 'gregorian', 'proleptic_gregorian'</span>
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<pre style="margin: 0;">-<span id="LC2504" class="line" lang="html">'noleap', '365_day', '360_day', 'julian', 'all_leap', '366_day'<span class="nt" style="color: #000080;"></code></span>.</span>
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<pre style="margin: 0;">-<span id="LC2505" class="line" lang="html">Default is <span class="nt" style="color: #000080;"><code></span>'standard'<span class="nt" style="color: #000080;"></code></span>, which is a mixed Julian/Gregorian calendar.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2504" class="line" lang="html">Valid calendars <span class="nt" style="color: #000080;"><strong></span>'standard', 'gregorian', 'proleptic_gregorian'</span>
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<pre style="margin: 0;">+<span id="LC2505" class="line" lang="html">'noleap', '365_day', '360_day', 'julian', 'all_leap', '366_day'<span class="nt" style="color: #000080;"></strong></span>.</span>
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<pre style="margin: 0;">+<span id="LC2506" class="line" lang="html">Default is <span class="nt" style="color: #000080;"><code></span>None<span class="nt" style="color: #000080;"></code></span> which means the calendar associated with the rist</span>
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<pre style="margin: 0;">+<span id="LC2507" class="line" lang="html">input datetime instance will be used.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;"> <span id="LC2508" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>returns a numeric time value, or an array of numeric time values</span>
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<pre style="margin: 0;">-<span id="LC2507" class="line" lang="html">with approximately 1<span class="idiff left right">00</span> microsecond accuracy.<span class="nt" style="color: #000080;"></p></div></span></span>
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<pre style="margin: 0;">+<span id="LC2509" class="line" lang="html">with approximately 1 microsecond accuracy.<span class="nt" style="color: #000080;"></p></div></span></span>
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<pre style="margin: 0;"> <span id="LC2510" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"source_cont"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2552,41 +2554,41 @@ used to build the module, and when it was built.</p></div></td>
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<pre style="margin: 0;">-<span id="LC2555" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"desc"</span><span class="nt" style="color: #000080;">><p></span>num2date(times,<span class="idiff left right">units,calendar='standard',only_use_cftime_datetimes=True,</span>only_use_python_datetimes=False)<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2557" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"desc"</span><span class="nt" style="color: #000080;">><p></span>num2date(times,<span class="idiff left right"> units, calendar='standard', only_use_cftime_datetimes=True, </span>only_use_python_datetimes=False)<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;"> <span id="LC2558" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>Return datetime objects given numeric time values. The units</span>
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<pre style="margin: 0;">-<span id="LC2557" class="line" lang="html">of the numeric time values are described by the <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> argument</span>
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<pre style="margin: 0;">-<span id="LC2558" class="line" lang="html">and the <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> keyword. The returned datetime objects represent</span>
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<pre style="margin: 0;">+<span id="LC2559" class="line" lang="html">of the numeric time values are described by the <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> argument</span>
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<pre style="margin: 0;">+<span id="LC2560" class="line" lang="html">and the <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> keyword. The returned datetime objects represent</span>
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<pre style="margin: 0;"> <span id="LC2561" class="line" lang="html">UTC with no time-zone offset, even if the specified</span>
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<pre style="margin: 0;">-<span id="LC2560" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> contain a time-zone offset.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2561" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">times</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: numeric time values.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2562" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff"></code></strong></span></span><span class="idiff">: a string of the form </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="ni" style="color: #800080;"><span class="idiff"><</span></span><span class="idiff">time units</span><span class="ni" style="color: #800080;"><span class="idiff">></span></span><span class="idiff"> since </span><span class="ni" style="color: #800080;"><span class="idiff"><</span></span><span class="idiff">reference time</span><span class="ni" style="color: #800080;"><span class="idiff">></span></span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span></span>
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<pre style="margin: 0;">-<span id="LC2563" class="line" lang="html">describing the time units. <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="ni" style="color: #800080;"><span class="idiff"><</span></span><span class="idiff">time units</span><span class="ni" style="color: #800080;"><span class="idiff">></span></span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> can be days, hours, minutes,</span>
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<pre style="margin: 0;">-<span id="LC2564" class="line" lang="html">seconds, milliseconds or microseconds. <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="ni" style="color: #800080;"><span class="idiff"><</span></span><span class="idiff">reference time</span><span class="ni" style="color: #800080;"><span class="idiff">></span></span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> is the time</span>
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<pre style="margin: 0;">-<span id="LC2565" class="line" lang="html">origin. <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">months_since</span><span class="nt" style="color: #000080;"><span class="idiff"></code></span></span><span class="idiff"> is allowed </span><span class="nt" style="color: #000080;"><span class="idiff"><em></span></span><span class="idiff">only</span><span class="nt" style="color: #000080;"><span class="idiff"></em></span></span><span class="idiff"> for the </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="idiff">360_day</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span> calendar.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2566" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">calendar</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: describes the calendar used in the time calculations.</span>
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<pre style="margin: 0;">+<span id="LC2562" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> contain a time-zone offset.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2563" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">times</span><span class="nt" style="color: #000080;"></strong></span>: numeric time values.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2564" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left">units</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff">: a string of the form </span><span class="nt" style="color: #000080;"><span class="idiff"><strong><time</span></span><span class="idiff"> </span><span class="na" style="color: #008080;"><span class="idiff">units</span></span><span class="nt" style="color: #000080;"><span class="idiff">></span></span><span class="idiff"> since </span><span class="nt" style="color: #000080;"><span class="idiff"><reference</span></span><span class="idiff"> </span><span class="na" style="color: #008080;"><span class="idiff">time</span></span><span class="nt" style="color: #000080;"><span class="idiff right">></strong</span>></span></span>
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<pre style="margin: 0;">+<span id="LC2565" class="line" lang="html">describing the time units. <span class="nt" style="color: #000080;"><<span class="idiff left">strong><time</span></span><span class="idiff"> </span><span class="na" style="color: #008080;"><span class="idiff">units</span></span><span class="nt" style="color: #000080;"><span class="idiff right">></strong</span>></span> can be days, hours, minutes,</span>
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<pre style="margin: 0;">+<span id="LC2566" class="line" lang="html">seconds, milliseconds or microseconds. <span class="nt" style="color: #000080;"><<span class="idiff left">strong><reference</span></span><span class="idiff"> </span><span class="na" style="color: #008080;"><span class="idiff">time</span></span><span class="nt" style="color: #000080;"><span class="idiff right">></strong</span>></span> is the time</span>
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<pre style="margin: 0;">+<span id="LC2567" class="line" lang="html">origin. <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">months_since</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff"> is allowed </span><span class="nt" style="color: #000080;"><span class="idiff"><em></span></span><span class="idiff">only</span><span class="nt" style="color: #000080;"><span class="idiff"></em></span></span><span class="idiff"> for the </span><span class="nt" style="color: #000080;"><span class="idiff"><strong></span></span><span class="idiff">360_day</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span> calendar.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2568" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">calendar</span><span class="nt" style="color: #000080;"></strong></span>: describes the calendar used in the time calculations.</span>
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<pre style="margin: 0;"> <span id="LC2569" class="line" lang="html">All the values currently defined in the</span>
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<pre style="margin: 0;"> <span id="LC2570" class="line" lang="html"><span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"http://cfconventions.org"</span><span class="nt" style="color: #000080;">></span>CF metadata convention<span class="nt" style="color: #000080;"></a></span></span>
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<pre style="margin: 0;">-<span id="LC2569" class="line" lang="html">Valid calendars <span class="nt" style="color: #000080;"><<span class="idiff left right">code</span>></span>'standard', 'gregorian', 'proleptic_gregorian'</span>
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<pre style="margin: 0;">-<span id="LC2570" class="line" lang="html">'noleap', '365_day', '360_day', 'julian', 'all_leap', '366_day'<span class="nt" style="color: #000080;"></<span class="idiff left right">code</span>></span>.</span>
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<pre style="margin: 0;">-<span id="LC2571" class="line" lang="html">Default is <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">'standard'</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span>, which is a mixed Julian/Gregorian calendar.<span class="nt" style="color: #000080;"></p></span></span>
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2572
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<pre style="margin: 0;">-<span id="LC2572" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">only_use_cftime_datetimes</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: if False, python datetime.datetime</span>
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<pre style="margin: 0;">+<span id="LC2571" class="line" lang="html">Valid calendars <span class="nt" style="color: #000080;"><<span class="idiff left right">strong</span>></span>'standard', 'gregorian', 'proleptic_gregorian'</span>
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<pre style="margin: 0;">+<span id="LC2572" class="line" lang="html">'noleap', '365_day', '360_day', 'julian', 'all_leap', '366_day'<span class="nt" style="color: #000080;"></<span class="idiff left right">strong</span>></span>.</span>
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<pre style="margin: 0;">+<span id="LC2573" class="line" lang="html">Default is <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">'standard'</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span>, which is a mixed Julian/Gregorian calendar.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2574" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">only_use_cftime_datetimes</span><span class="nt" style="color: #000080;"></strong></span>: if False, python datetime.datetime</span>
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<pre style="margin: 0;"> <span id="LC2575" class="line" lang="html">objects are returned from num2date where possible; if True dates which</span>
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<pre style="margin: 0;">-<span id="LC2574" class="line" lang="html">subclass cftime.datetime are returned for all calendars. Default <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">True</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span>.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">-<span id="LC2575" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><span class="idiff left"><code></span></span><span class="idiff">only_use_python_datetimes</span><span class="nt" style="color: #000080;"><span class="idiff right"></code></span></strong></span>: always return python datetime.datetime</span>
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<pre style="margin: 0;">+<span id="LC2576" class="line" lang="html">subclass cftime.datetime are returned for all calendars. Default <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">True</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span>.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2577" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong></span><span class="idiff left right">only_use_python_datetimes</span><span class="nt" style="color: #000080;"></strong></span>: always return python datetime.datetime</span>
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<pre style="margin: 0;"> <span id="LC2578" class="line" lang="html">objects and raise an error if this is not possible. Ignored unless</span>
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<pre style="margin: 0;">-<span id="LC2577" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">only_use_cftime_datetimes=False</span><span class="nt" style="color: #000080;"><span class="idiff"></code></span></span><span class="idiff">. Default </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="idiff">False</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span>.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2579" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">only_use_cftime_datetimes=False</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff">. Default </span><span class="nt" style="color: #000080;"><span class="idiff"><strong></span></span><span class="idiff">False</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span>.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;"> <span id="LC2580" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>returns a datetime instance, or an array of datetime instances with</span>
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2579
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<pre style="margin: 0;">-<span id="LC2579" class="line" lang="html"><span class="idiff left right">approximately 100 microsecond accuracy</span>.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;">+<span id="LC2581" class="line" lang="html"><span class="idiff left right">microsecond accuracy, if possible</span>.<span class="nt" style="color: #000080;"></p></span></span>
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<pre style="margin: 0;"> <span id="LC2582" class="line" lang="html"><span class="nt" style="color: #000080;"><p><strong><em></span>Note<span class="nt" style="color: #000080;"></em></strong></span>: If only_use_cftime_datetimes=False and</span>
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<pre style="margin: 0;"> <span id="LC2583" class="line" lang="html">use_only_python_datetimes=False, the datetime instances</span>
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<pre style="margin: 0;"> <span id="LC2584" class="line" lang="html">returned are 'real' python datetime</span>
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<pre style="margin: 0;">-<span id="LC2583" class="line" lang="html">objects if <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">calendar='proleptic_gregorian'</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span>, or</span>
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2584
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<pre style="margin: 0;">-<span id="LC2584" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">calendar='standard'</span><span class="nt" style="color: #000080;"><span class="idiff"></code></span></span><span class="idiff"> or </span><span class="nt" style="color: #000080;"><span class="idiff"><code></span></span><span class="idiff">'gregorian'</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span></span>
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<pre style="margin: 0;">+<span id="LC2585" class="line" lang="html">objects if <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">calendar='proleptic_gregorian'</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span>, or</span>
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2586
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<pre style="margin: 0;">+<span id="LC2586" class="line" lang="html"><span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">calendar='standard'</span><span class="nt" style="color: #000080;"><span class="idiff"></strong></span></span><span class="idiff"> or </span><span class="nt" style="color: #000080;"><span class="idiff"><strong></span></span><span class="idiff">'gregorian'</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span></span>
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2587
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<pre style="margin: 0;"> <span id="LC2587" class="line" lang="html">and the date is after the breakpoint between the Julian and</span>
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<pre style="margin: 0;"> <span id="LC2588" class="line" lang="html">Gregorian calendars (1582-10-15). Otherwise, they are ctime.datetime</span>
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2589
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<pre style="margin: 0;"> <span id="LC2589" class="line" lang="html">objects which support some but not all the methods of native python</span>
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<pre style="margin: 0;"> <span id="LC2590" class="line" lang="html">datetime objects. The datetime instances</span>
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<pre style="margin: 0;">-<span id="LC2589" class="line" lang="html">do not contain a time-zone offset, even if the specified <span class="nt" style="color: #000080;"><<span class="idiff left">code></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></code</span>></span></span>
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<pre style="margin: 0;">+<span id="LC2591" class="line" lang="html">do not contain a time-zone offset, even if the specified <span class="nt" style="color: #000080;"><<span class="idiff left">strong></span></span><span class="idiff">units</span><span class="nt" style="color: #000080;"><span class="idiff right"></strong</span>></span></span>
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<pre style="margin: 0;"> <span id="LC2592" class="line" lang="html">contains one.<span class="nt" style="color: #000080;"></p></div></span></span>
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<pre style="margin: 0;"> <span id="LC2593" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"source_cont"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;"> <span id="LC2594" class="line" lang="html"><span class="nt" style="color: #000080;"></div></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6629,7 +6631,7 @@ slower than multiple calls to the unstrided read routine <code>nc_get_vara</code</td>
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<pre style="margin: 0;"> <span id="LC6631" class="line" lang="html"> <span class="nt" style="color: #000080;"><footer</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"footer"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;"> <span id="LC6632" class="line" lang="html"> <span class="nt" style="color: #000080;"><p></span></span>
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<pre style="margin: 0;"> <span id="LC6633" class="line" lang="html"> Documentation generated by</span>
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<pre style="margin: 0;">-<span id="LC6632" class="line" lang="html"> <span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"https://github.com/BurntSushi/pdoc"</span><span class="nt" style="color: #000080;">></span>pdoc 0.3.2.dev<span class="idiff left right">30</span><span class="nt" style="color: #000080;"></a></span></span>
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<pre style="margin: 0;">+<span id="LC6634" class="line" lang="html"> <span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"https://github.com/BurntSushi/pdoc"</span><span class="nt" style="color: #000080;">></span>pdoc 0.3.2.dev<span class="idiff left right">29+dirty</span><span class="nt" style="color: #000080;"></a></span></span>
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<pre style="margin: 0;"> <span id="LC6637" class="line" lang="html"> <span class="nt" style="color: #000080;"><p></span>pdoc is in the public domain with the</span>
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<a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce#3d2c74e73145075ffb254500b1a870de8f5123c9"><strong>netCDF4/_netCDF4.pyx</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="cython"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="cython"><span class="s" style="color: #d14;">Version 1.5.<span class="idiff left right">4</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cython"><span class="s" style="color: #d14;">Version 1.5.<span class="idiff left right">5</span></span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cython"><span class="s" style="color: #d14;">---------------</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cython"><span class="s" style="color: #d14;">- - -</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="cython"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -75,25 +75,24 @@ Install</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="cython"><span class="s" style="color: #d14;"> easiest if all the C libs are built as shared libraries.</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="cython"><span class="s" style="color: #d14;"> - By default, the utility `nc-config`, installed with netcdf 4.1.2 or higher,</span></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="cython"><span class="s" style="color: #d14;"> will be run used to determine where all the dependencies live.</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="cython"><span class="s" style="color: #d14;"> - If `nc-config` is not in your default `$PATH`</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="cython"><span class="s" style="color: #d14;"> edit the `setup.cfg` file</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cython"><span class="s" style="color: #d14;"> - If `nc-config` is not in your default `PATH`, you can set the `NETCDF4_DIR`</span></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cython"><span class="s" style="color: #d14;"> environment variable and `setup.py` will look in `$NETCDF4_DIR/bin`.</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cython"><span class="s" style="color: #d14;"> You can also use the file `setup.cfg` to set the path to `nc-config`, or</span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cython"><span class="s" style="color: #d14;"> enter the paths to the libraries and include files manually. Just edit the `setup.cfg` file</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="cython"><span class="s" style="color: #d14;"> in a text editor and follow the instructions in the comments.</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="cython"><span class="s" style="color: #d14;"> In addition to specifying the path to `nc-config`,</span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="cython"><span class="s" style="color: #d14;"> you can manually set the paths to all the libraries and their include files</span></span>
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83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="cython"><span class="s" style="color: #d14;"> (in case `nc-config` does not do the right thing).</span></span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="cython"><span class="s" style="color: #d14;"> - run `python setup.py build`, then `python setup.py install` (as root if</span></span>
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85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="cython"><span class="s" style="color: #d14;"> necessary).</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="cython"><span class="s" style="color: #d14;"> - [`pip install`](https://pip.pypa.io/en/latest/reference/pip_install.html) can</span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="cython"><span class="s" style="color: #d14;"> also be used, with library paths set with environment variables. To make</span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="cython"><span class="s" style="color: #d14;"> this work, the `USE_SETUPCFG` environment variable must be used to tell</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="cython"><span class="s" style="color: #d14;"> setup.py not to use `setup.cfg`.</span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="cython"><span class="s" style="color: #d14;"> For example, `USE_SETUPCFG=0 HDF5_INCDIR=/usr/include/hdf5/serial</span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="cython"><span class="s" style="color: #d14;"> HDF5_LIBDIR=/usr/lib/x86_64-linux-gnu/hdf5/serial pip install` has been</span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="cython"><span class="s" style="color: #d14;"> shown to work on an Ubuntu/Debian linux system. Similarly, environment variables</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cython"><span class="s" style="color: #d14;"> To disable the use of `nc-config`, set the env var `USE_NCCONFIG` to 0.</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cython"><span class="s" style="color: #d14;"> To disable the use of `setup.cfg`, set `USE_SETUPCFG` to 0.</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cython"><span class="s" style="color: #d14;"> As a last resort, the library and include paths can be set via environment variables.</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cython"><span class="s" style="color: #d14;"> If you go this route, set `USE_NCCONFIG` and `USE_SETUPCFG` to 0, and specify</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cython"><span class="s" style="color: #d14;"> `NETCDF4_LIBDIR`, `NETCDF4_INCDIR`, `HDF5_LIBDIR` and `HDF5_INCDIR`.</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cython"><span class="s" style="color: #d14;"> Similarly, environment variables</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="cython"><span class="s" style="color: #d14;"> (all capitalized) can be used to set the include and library paths for</span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="cython"><span class="s" style="color: #d14;"> `hdf5`, `netCDF4`, `hdf4`, `szip`, `jpeg`, `curl` and `zlib`. If the</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="cython"><span class="s" style="color: #d14;"> libraries are installed in standard places (e.g. `/usr` or `/usr/local`),</span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="cython"><span class="s" style="color: #d14;"> the environment variables do not need to be set.</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cython"><span class="s" style="color: #d14;"> `hdf4`, `szip`, `jpeg`, `curl` and `zlib`. If the dependencies are not found</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cython"><span class="s" style="color: #d14;"> in any of the paths specified by environment variables, then standard locations</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cython"><span class="s" style="color: #d14;"> (such as `/usr` and `/usr/local`) are searched.</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cython"><span class="s" style="color: #d14;"> - run `python setup.py build`, then `python setup.py install` (as root if</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cython"><span class="s" style="color: #d14;"> necessary). `pip install` can be used to install pre-compiled binary wheels from </span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cython"><span class="s" style="color: #d14;"> [pypi](https://pypi.org/project/netCDF4).</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="cython"><span class="s" style="color: #d14;"> - run the tests in the 'test' directory by running `python run_all.py`.</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="cython"></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="cython"><span class="s" style="color: #d14;">Tutorial</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1205,7 +1204,7 @@ except ImportError:</td>
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<pre style="margin: 0;"> <span id="LC1204" class="line" lang="cython"> <span class="c1" style="color: #998; font-style: italic;"># python3: zip is already python2's itertools.izip</span></span>
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<pre style="margin: 0;"> <span id="LC1205" class="line" lang="cython"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;"> <span id="LC1206" class="line" lang="cython"></span>
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<pre style="margin: 0;">-<span id="LC1208" class="line" lang="cython"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"1.5.<span class="idiff left right">4</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC1207" class="line" lang="cython"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"1.5.<span class="idiff left right">5</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC1208" class="line" lang="cython"></span>
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<pre style="margin: 0;"> <span id="LC1209" class="line" lang="cython"><span class="c1" style="color: #998; font-style: italic;"># Initialize numpy</span></span>
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<pre style="margin: 0;"> <span id="LC1210" class="line" lang="cython"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">posixpath</span></span>
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<a href="https://salsa.debian.org/debian-gis-team/netcdf4-python/-/commit/55ffe800b2e00c463c6ae81146a858ff94d182ce#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,6 +36,18 @@ def check_hdf5version(hdf5_includedir):</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">line</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">'"'</span><span class="p">)[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">hdf5_version</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">get_hdf5_version</span><span class="p">(</span><span class="n" style="color: #333;">direc</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># check to see if hdf5 headers in direc, return version number or None</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'checking %s ...</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">direc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">check_hdf5version</span><span class="p">(</span><span class="n" style="color: #333;">direc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">hdf5_version</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'hdf5 headers not found in %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">direc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'%s headers found in %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span> <span class="o" style="font-weight: 600;">%</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">hdf5_version</span><span class="p">,</span><span class="n" style="color: #333;">direc</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">hdf5_version</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">check_ifnetcdf4</span><span class="p">(</span><span class="n" style="color: #333;">netcdf4_includedir</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -187,8 +199,7 @@ else:</td>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="python"><span class="n" style="color: #333;">setup_cfg</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'setup.cfg'</span></span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># contents of setup.cfg will override env vars, unless</span></span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># USE_SETUPCFG evaluates to True. Exception is use_ncconfig,</span></span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># which does not take precedence ofver USE_NCCONFIG env var.</span></span>
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># USE_SETUPCFG evaluates to False. </span></span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="python"><span class="n" style="color: #333;">ncconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="python"><span class="n" style="color: #333;">use_ncconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">USE_SETUPCFG</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="n" style="color: #333;">setup_cfg</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -280,27 +291,26 @@ if USE_SETUPCFG and os.path.exists(setup_cfg):</td>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># make sure USE_NCCONFIG from environment takes</span></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># precendence over use_ncconfig from setup.cfg (issue #341).</span></span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">use_ncconfig</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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286
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="python"> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">use_ncconfig</span></span>
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287
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="python"><span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="python"> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="python"></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># if USE_NCCONFIG set, and nc-config works, use it.</span></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">USE_NCCONFIG</span><span class="p">:</span></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># if NETCDF4_DIR env var is set, look for nc-config in NETCDF4_DIR/bin.</span></span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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293
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ncconfig</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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294
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296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">netCDF4_dir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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295
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297
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="python"> <span class="n" style="color: #333;">ncconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">netCDF4_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">'bin/nc-config'</span><span class="p">)</span></span>
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296
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298
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span> <span class="c1" style="color: #998; font-style: italic;"># otherwise, just hope it's in the users PATH.</span></span>
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297
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299
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="python"> <span class="n" style="color: #333;">ncconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'nc-config'</span></span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="python"> <span class="n" style="color: #333;">retcode</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">call</span><span class="p">([</span><span class="n" style="color: #333;">ncconfig</span><span class="p">,</span> <span class="s" style="color: #d14;">'--libs'</span><span class="p">],</span> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">)</span></span>
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300
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span><span class="p">:</span></span>
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301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="python"> <span class="n" style="color: #333;">retcode</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span></span>
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302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="python"><span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="python"> <span class="n" style="color: #333;">retcode</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="python"> <span class="n" style="color: #333;">HAS_NCCONFIG</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">call</span><span class="p">([</span><span class="n" style="color: #333;">ncconfig</span><span class="p">,</span> <span class="s" style="color: #d14;">'--libs'</span><span class="p">],</span></span>
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<td class="diff-line-num new new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="python"> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span></span>
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="python"><span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">OSError</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="python"> <span class="n" style="color: #333;">HAS_NCCONFIG</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># make sure USE_NCCONFIG from environment takes</span></span>
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># precendence over use_ncconfig from setup.cfg (issue #341).</span></span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">use_ncconfig</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="python"> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">use_ncconfig</span></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="python"><span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># if nc-config exists, and USE_NCCONFIG not set, try to use it.</span></span>
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">HAS_NCCONFIG</span><span class="p">:</span> <span class="n" style="color: #333;">USE_NCCONFIG</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span></span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#elif USE_NCCONFIG is None: </span></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># USE_NCCONFIG = False # don't try to use nc-config if USE_NCCONFIG not set</span></span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="python"> <span class="n" style="color: #333;">HAS_PKG_CONFIG</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">call</span><span class="p">([</span><span class="s" style="color: #d14;">'pkg-config'</span><span class="p">,</span> <span class="s" style="color: #d14;">'--libs'</span><span class="p">,</span> <span class="s" style="color: #d14;">'hdf5'</span><span class="p">],</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -311,7 +321,9 @@ except OSError:</td>
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321
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_populate_hdf5_info</span><span class="p">(</span><span class="n" style="color: #333;">dirstosearch</span><span class="p">,</span> <span class="n" style="color: #333;">inc_dirs</span><span class="p">,</span> <span class="n" style="color: #333;">libs</span><span class="p">,</span> <span class="n" style="color: #333;">lib_dirs</span><span class="p">):</span></span>
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312
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="python"> <span class="k" style="font-weight: 600;">global</span> <span class="n" style="color: #333;">HDF5_incdir</span><span class="p">,</span> <span class="n" style="color: #333;">HDF5_dir</span><span class="p">,</span> <span class="n" style="color: #333;">HDF5_libdir</span></span>
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313
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323
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="python"></span>
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314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">HAS_PKG_CONFIG</span><span class="p">:</span></span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="python"> <span class="n" style="color: #333;">nohdf5dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">HDF5_incdir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">HDF5_libdir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">HDF5_dir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">HAS_PKG_CONFIG</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">nohdf5dirs</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># if HDF5 dirs not specified, and pkg-config available, use it</span></span>
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327
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<pre style="margin: 0;"> <span id="LC327" class="line" lang="python"> <span class="n" style="color: #333;">dep</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">Popen</span><span class="p">([</span><span class="s" style="color: #d14;">'pkg-config'</span><span class="p">,</span> <span class="s" style="color: #d14;">'--cflags'</span><span class="p">,</span> <span class="s" style="color: #d14;">'hdf5'</span><span class="p">],</span></span>
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316
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328
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<pre style="margin: 0;"> <span id="LC328" class="line" lang="python"> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">).</span><span class="n" style="color: #333;">communicate</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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317
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329
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<pre style="margin: 0;"> <span id="LC329" class="line" lang="python"> <span class="n" style="color: #333;">inc_dirs</span><span class="p">.</span><span class="n" style="color: #333;">extend</span><span class="p">([</span><span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">:].</span><span class="n" style="color: #333;">decode</span><span class="p">())</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dep</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -331,8 +343,7 @@ def _populate_hdf5_info(dirstosearch, inc_dirs, libs, lib_dirs):</td>
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343
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="python"><span class="s" style="color: #d14;"> HDF5_DIR environment variable not set, checking some standard locations ..</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"""</span><span class="p">)</span></span>
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345
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">direc</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dirstosearch</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'checking %s ...</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">direc</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">check_hdf5version</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">direc</span><span class="p">,</span> <span class="s" style="color: #d14;">'include'</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_hdf5_version</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">direc</span><span class="p">,</span> <span class="s" style="color: #d14;">'include'</span><span class="p">))</span></span>
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347
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">hdf5_version</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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337
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348
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<pre style="margin: 0;"> <span id="LC348" class="line" lang="python"> <span class="k" style="font-weight: 600;">continue</span></span>
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338
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349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="357" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -346,7 +357,7 @@ def _populate_hdf5_info(dirstosearch, inc_dirs, libs, lib_dirs):</td>
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346
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<pre style="margin: 0;"> <span id="LC357" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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347
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">HDF5_incdir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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348
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359
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<pre style="margin: 0;"> <span id="LC359" class="line" lang="python"> <span class="n" style="color: #333;">HDF5_incdir</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">HDF5_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">'include'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">check_hdf5</span>version</span><span class="p">(</span><span class="n" style="color: #333;">HDF5_incdir</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="python"> <span class="n" style="color: #333;">hdf5_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">get_hdf5_</span>version</span><span class="p">(</span><span class="n" style="color: #333;">HDF5_incdir</span><span class="p">)</span></span>
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361
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">hdf5_version</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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351
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'did not find HDF5 headers in %s'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">HDF5_incdir</span><span class="p">)</span></span>
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352
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -365,8 +376,9 @@ def _populate_hdf5_info(dirstosearch, inc_dirs, libs, lib_dirs):</td>
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365
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376
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="python"><span class="n" style="color: #333;">dirstosearch</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">expanduser</span><span class="p">(</span><span class="s" style="color: #d14;">'~'</span><span class="p">),</span> <span class="s" style="color: #d14;">'/usr/local'</span><span class="p">,</span> <span class="s" style="color: #d14;">'/sw'</span><span class="p">,</span> <span class="s" style="color: #d14;">'/opt'</span><span class="p">,</span></span>
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366
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377
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="python"> <span class="s" style="color: #d14;">'/opt/local'</span><span class="p">,</span> <span class="s" style="color: #d14;">'/usr'</span><span class="p">]</span></span>
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367
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378
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="python"></span>
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368
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">retcode</span><span class="p">:</span> <span class="c1" style="color: #998; font-style: italic;"># Try nc-config.</span></span>
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369
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'using nc-config ...</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># try nc-config first</span></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">USE_NCCONFIG</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">HAS_NCCONFIG</span><span class="p">:</span> <span class="c1" style="color: #998; font-style: italic;"># Try nc-config.</span></span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'using %s...</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">ncconfig</span><span class="p">)</span></span>
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370
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382
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="python"> <span class="n" style="color: #333;">dep</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">Popen</span><span class="p">([</span><span class="n" style="color: #333;">ncconfig</span><span class="p">,</span> <span class="s" style="color: #d14;">'--libs'</span><span class="p">],</span></span>
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371
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383
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="python"> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">).</span><span class="n" style="color: #333;">communicate</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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372
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384
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="python"> <span class="n" style="color: #333;">libs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">l</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">:].</span><span class="n" style="color: #333;">decode</span><span class="p">())</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">l</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dep</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">l</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">].</span><span class="n" style="color: #333;">decode</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'-l'</span><span class="p">]</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -377,23 +389,25 @@ if not retcode: # Try nc-config.</td>
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377
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389
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<pre style="margin: 0;"> <span id="LC389" class="line" lang="python"> <span class="n" style="color: #333;">inc_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">:].</span><span class="n" style="color: #333;">decode</span><span class="p">())</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dep</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span></span>
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378
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390
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="python"> <span class="n" style="color: #333;">i</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">].</span><span class="n" style="color: #333;">decode</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'-I'</span><span class="p">]</span></span>
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391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC380" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">_populate_hdf5_info</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dirstosearch</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">inc_dirs</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">libs</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">lib_dirs</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="python"><span class="k" style="font-weight: 600;"><span class="idiff left">elif</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">HAS_PKG_CONFIG</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="c1" style="color: #998; font-style: italic;"><span class="idiff right"># Try pkg-config.</span></span></span>
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382
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">sys</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">stdout</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">write</span></span><span class="p"><span class="idiff">(</span></span><span class="s" style="color: #d14;"><span class="idiff">'using pkg-config ...</span></span><span class="se" style="color: #d14;"><span class="idiff">\n</span></span><span class="s" style="color: #d14;"><span class="idiff">'</span></span><span class="p"><span class="idiff right">)</span></span></span>
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383
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">dep</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">subprocess</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">Popen</span></span><span class="p"><span class="idiff">([</span></span><span class="s" style="color: #d14;"><span class="idiff">'pkg-config'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'--libs'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'netcdf'</span></span><span class="p"><span class="idiff right">],</span></span></span>
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384
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<pre style="margin: 0;">-<span id="LC384" class="line" lang="python"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">stdout</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="n" style="color: #333;"><span class="idiff">subprocess</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">PIPE</span></span><span class="p"><span class="idiff">).</span></span><span class="n" style="color: #333;"><span class="idiff">communicate</span></span><span class="p"><span class="idiff">()[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span></span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">libs</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="nb" style="color: #0086b3;"><span class="idiff">str</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">2</span></span><span class="p"><span class="idiff">:].</span></span><span class="n" style="color: #333;"><span class="idiff">decode</span></span><span class="p"><span class="idiff">())</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">for</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">dep</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">split</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">:</span></span><span class="mi" style="color: #099;"><span class="idiff">2</span></span><span class="p"><span class="idiff">].</span></span><span class="n" style="color: #333;"><span class="idiff">decode</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'-l'</span></span><span class="p"><span class="idiff right">]</span></span></span>
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386
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<pre style="margin: 0;">-<span id="LC386" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">lib_dirs</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="nb" style="color: #0086b3;"><span class="idiff">str</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">2</span></span><span class="p"><span class="idiff">:].</span></span><span class="n" style="color: #333;"><span class="idiff">decode</span></span><span class="p"><span class="idiff">())</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">for</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">dep</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">split</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">if</span></span></span>
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387
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="python"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">:</span></span><span class="mi" style="color: #099;"><span class="idiff">2</span></span><span class="p"><span class="idiff">].</span></span><span class="n" style="color: #333;"><span class="idiff">decode</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'-L'</span></span><span class="p"><span class="idiff right">]</span></span></span>
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388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="python"></span>
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389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">inc_dirs</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">[]</span></span></span>
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390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="python"><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">_populate_hdf5_info</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dirstosearch</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">inc_dirs</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">libs</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">lib_dirs</span></span><span class="p"><span class="idiff right">)</span></span></span>
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391
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<td class="diff-line-num new_line old" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># If nc-config <span class="idiff left right">and pkg-config both didn't work (it won't on Windows)</span>, fall back on brute force method.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># check to see if hdf5 found in directories returned by nc-config</span></span></span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="python"><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">hdf5_version</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">for</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">direc</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">inc_dirs</span></span><span class="p"><span class="idiff right">:</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="python"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">hdf5_version</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">get_hdf5_version</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">direc</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">hdf5_version</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">not</span></span><span class="idiff"> </span><span class="bp" style="color: #999;"><span class="idiff">None</span></span><span class="p"><span class="idiff right">:</span></span></span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="python"> <span class="idiff left"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">break</span></span></span>
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># if hdf5 not found, search other standard locations (including those specified in env vars).</span></span></span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">hdf5_version</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="bp" style="color: #999;"><span class="idiff">None</span></span><span class="p"><span class="idiff right">:</span></span></span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdout</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'nc-config did provide path to HDF5 headers, search standard locations...'</span><span class="p">)</span></span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="python"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">_populate_hdf5_info</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dirstosearch</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">inc_dirs</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">libs</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">lib_dirs</span></span><span class="p"><span class="idiff right">)</span></span></span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="python"></span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># If nc-config <span class="idiff left right">doesn't work</span>, fall back on brute force method.</span></span>
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392
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404
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<pre style="margin: 0;"> <span id="LC404" class="line" lang="python"><span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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393
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405
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<pre style="margin: 0;"> <span id="LC405" class="line" lang="python"> <span class="n" style="color: #333;">lib_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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394
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406
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="python"> <span class="n" style="color: #333;">inc_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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395
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407
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="python"> <span class="n" style="color: #333;">libs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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408
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="python"></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># _populate_hdf5_info will use HDF5_dir, HDF5_libdir and HDF5_incdir if they are set.</span></span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># otherwise pkg-config will be tried, and if that fails, dirstosearch will be searched.</span></span>
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397
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411
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="python"> <span class="n" style="color: #333;">_populate_hdf5_info</span><span class="p">(</span><span class="n" style="color: #333;">dirstosearch</span><span class="p">,</span> <span class="n" style="color: #333;">inc_dirs</span><span class="p">,</span> <span class="n" style="color: #333;">libs</span><span class="p">,</span> <span class="n" style="color: #333;">lib_dirs</span><span class="p">)</span></span>
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398
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412
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="python"></span>
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399
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413
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<pre style="margin: 0;"> <span id="LC413" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">netCDF4_incdir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">netCDF4_dir</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="610" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -596,14 +610,14 @@ else:</td>
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596
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610
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<pre style="margin: 0;"> <span id="LC610" class="line" lang="python"></span>
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597
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611
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<pre style="margin: 0;"> <span id="LC611" class="line" lang="python"><span class="n" style="color: #333;">setup</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"netCDF4"</span><span class="p">,</span></span>
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598
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612
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<pre style="margin: 0;"> <span id="LC612" class="line" lang="python"> <span class="n" style="color: #333;">cmdclass</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">cmdclass</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC599" class="line" lang="python"> <span class="n" style="color: #333;">version</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"1.5.<span class="idiff left right">4</span>"</span><span class="p">,</span></span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="python"> <span class="n" style="color: #333;">version</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"1.5.<span class="idiff left right">5</span>"</span><span class="p">,</span></span>
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600
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614
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<pre style="margin: 0;"> <span id="LC614" class="line" lang="python"> <span class="n" style="color: #333;">long_description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"netCDF version 4 has many features not found in earlier versions of the library, such as hierarchical groups, zlib compression, multiple unlimited dimensions, and new data types. It is implemented on top of HDF5. This module implements most of the new features, and can read and write netCDF files compatible with older versions of the library. The API is modelled after Scientific.IO.NetCDF, and should be familiar to users of that module.</span><span class="se" style="color: #d14;">\n\n</span><span class="s" style="color: #d14;">This project is hosted on a `GitHub repository <https://github.com/Unidata/netcdf4-python>`_ where you may access the most up-to-date source."</span><span class="p">,</span></span>
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615
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<pre style="margin: 0;"> <span id="LC615" class="line" lang="python"> <span class="n" style="color: #333;">author</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Jeff Whitaker"</span><span class="p">,</span></span>
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602
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616
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<pre style="margin: 0;"> <span id="LC616" class="line" lang="python"> <span class="n" style="color: #333;">author_email</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"jeffrey.s.whitaker@noaa.gov"</span><span class="p">,</span></span>
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603
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617
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<pre style="margin: 0;"> <span id="LC617" class="line" lang="python"> <span class="n" style="color: #333;">url</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"http://github.com/Unidata/netcdf4-python"</span><span class="p">,</span></span>
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604
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618
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<pre style="margin: 0;"> <span id="LC618" class="line" lang="python"> <span class="n" style="color: #333;">download_url</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"http://python.org/pypi/netCDF4"</span><span class="p">,</span></span>
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605
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619
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<pre style="margin: 0;"> <span id="LC619" class="line" lang="python"> <span class="n" style="color: #333;">platforms</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"any"</span><span class="p">],</span></span>
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606
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<pre style="margin: 0;">-<span id="LC606" class="line" lang="python"> <span class="n" style="color: #333;">license</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;"><span class="idiff left right">"OSI Approved"</span></span><span class="p">,</span></span>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="python"> <span class="n" style="color: #333;">license</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;"><span class="idiff left right">'License :: OSI Approved :: MIT License'</span></span><span class="p">,</span></span>
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607
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<td class="diff-line-num new_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
621
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<pre style="margin: 0;"> <span id="LC621" class="line" lang="python"> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Provides an object-oriented python interface to the netCDF version 4 library."</span><span class="p">,</span></span>
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608
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622
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<pre style="margin: 0;"> <span id="LC622" class="line" lang="python"> <span class="n" style="color: #333;">keywords</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'numpy'</span><span class="p">,</span> <span class="s" style="color: #d14;">'netcdf'</span><span class="p">,</span> <span class="s" style="color: #d14;">'data'</span><span class="p">,</span> <span class="s" style="color: #d14;">'science'</span><span class="p">,</span> <span class="s" style="color: #d14;">'network'</span><span class="p">,</span> <span class="s" style="color: #d14;">'oceanography'</span><span class="p">,</span></span>
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609
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623
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<pre style="margin: 0;"> <span id="LC623" class="line" lang="python"> <span class="s" style="color: #d14;">'meteorology'</span><span class="p">,</span> <span class="s" style="color: #d14;">'climate'</span><span class="p">],</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -613,7 +627,7 @@ setup(name="netCDF4",</td>
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627
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<pre style="margin: 0;"> <span id="LC627" class="line" lang="python"> <span class="s" style="color: #d14;">"Programming Language :: Python :: 3.7"</span><span class="p">,</span></span>
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614
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628
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<pre style="margin: 0;"> <span id="LC628" class="line" lang="python"> <span class="s" style="color: #d14;">"Programming Language :: Python :: 3.8"</span><span class="p">,</span></span>
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629
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<pre style="margin: 0;"> <span id="LC629" class="line" lang="python"> <span class="s" style="color: #d14;">"Intended Audience :: Science/Research"</span><span class="p">,</span></span>
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616
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<pre style="margin: 0;">-<span id="LC616" class="line" lang="python"> <span class="s" style="color: #d14;">"License :: OSI Approved"</span><span class="p">,</span></span>
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630
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="python"> <span class="s" style="color: #d14;">"License :: OSI Approved<span class="idiff left right"> :: MIT License</span>"</span><span class="p">,</span></span>
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617
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631
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<pre style="margin: 0;"> <span id="LC631" class="line" lang="python"> <span class="s" style="color: #d14;">"Topic :: Software Development :: Libraries :: Python Modules"</span><span class="p">,</span></span>
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632
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<pre style="margin: 0;"> <span id="LC632" class="line" lang="python"> <span class="s" style="color: #d14;">"Topic :: System :: Archiving :: Compression"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC633" class="line" lang="python"> <span class="s" style="color: #d14;">"Operating System :: OS Independent"</span><span class="p">],</span></span>
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