[commons-math3] branch master updated (6e2615a -> 3b5be9e)
Emmanuel Bourg
ebourg-guest at moszumanska.debian.org
Wed Apr 29 15:29:13 UTC 2015
This is an automated email from the git hooks/post-receive script.
ebourg-guest pushed a change to branch master
in repository commons-math3.
from 6e2615a Moved the package to Git
new def0876 Standards-Version updated to 3.9.6
adds 0e4ef18 Initial upstream branch.
adds 097b648 Imported Upstream version 3.5
new 45e3285 Merge tag 'upstream/3.5'
new 06f686e Refreshed the patch
new af8009e Fixed some paths in debian/copyright
new 3b5be9e Ignore the maven-jgit-buildnumber-plugin
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
LICENSE.txt | 457 ++
NOTICE.txt | 9 +
RELEASE-NOTES.txt | 35 +
build.xml | 365 ++
checkstyle.xml | 201 +
clirr-ignored.xml | 185 +
debian/changelog | 3 +
debian/control | 2 +-
debian/copyright | 26 +-
debian/maven.ignoreRules | 1 +
debian/patches/01_ignore_unstable_tests.diff | 4 +-
findbugs-exclude-filter.xml | 385 ++
license-header.txt | 16 +
pom.xml | 791 +++
src/changes/changes.xml | 3285 +++++++++++
src/changes/release-notes.vm | 140 +
src/main/assembly/bin.xml | 51 +
src/main/assembly/src.xml | 44 +
src/main/java/org/apache/commons/math3/Field.java | 58 +
.../org/apache/commons/math3/FieldElement.java | 87 +
.../org/apache/commons/math3/RealFieldElement.java | 402 ++
.../commons/math3/analysis/BivariateFunction.java | 35 +
.../DifferentiableMultivariateFunction.java | 52 +
.../DifferentiableMultivariateVectorFunction.java | 36 +
.../analysis/DifferentiableUnivariateFunction.java | 35 +
.../DifferentiableUnivariateMatrixFunction.java | 36 +
.../DifferentiableUnivariateVectorFunction.java | 36 +
.../commons/math3/analysis/FunctionUtils.java | 795 +++
.../math3/analysis/MultivariateFunction.java | 42 +
.../math3/analysis/MultivariateMatrixFunction.java | 35 +
.../math3/analysis/MultivariateVectorFunction.java | 35 +
.../analysis/ParametricUnivariateFunction.java | 44 +
.../commons/math3/analysis/TrivariateFunction.java | 35 +
.../commons/math3/analysis/UnivariateFunction.java | 81 +
.../math3/analysis/UnivariateMatrixFunction.java | 33 +
.../math3/analysis/UnivariateVectorFunction.java | 33 +
.../math3/analysis/differentiation/DSCompiler.java | 1822 ++++++
.../differentiation/DerivativeStructure.java | 1195 ++++
.../FiniteDifferencesDifferentiator.java | 383 ++
.../analysis/differentiation/GradientFunction.java | 65 +
.../analysis/differentiation/JacobianFunction.java | 69 +
.../MultivariateDifferentiableFunction.java | 42 +
.../MultivariateDifferentiableVectorFunction.java | 43 +
.../analysis/differentiation/SparseGradient.java | 877 +++
.../UnivariateDifferentiableFunction.java | 43 +
.../UnivariateDifferentiableMatrixFunction.java | 40 +
.../UnivariateDifferentiableVectorFunction.java | 40 +
.../UnivariateFunctionDifferentiator.java | 33 +
.../UnivariateMatrixFunctionDifferentiator.java | 33 +
.../UnivariateVectorFunctionDifferentiator.java | 33 +
.../analysis/differentiation/package-info.java | 42 +
.../commons/math3/analysis/function/Abs.java | 33 +
.../commons/math3/analysis/function/Acos.java | 53 +
.../commons/math3/analysis/function/Acosh.java | 53 +
.../commons/math3/analysis/function/Add.java | 32 +
.../commons/math3/analysis/function/Asin.java | 53 +
.../commons/math3/analysis/function/Asinh.java | 53 +
.../commons/math3/analysis/function/Atan.java | 53 +
.../commons/math3/analysis/function/Atan2.java | 33 +
.../commons/math3/analysis/function/Atanh.java | 53 +
.../commons/math3/analysis/function/Cbrt.java | 53 +
.../commons/math3/analysis/function/Ceil.java | 33 +
.../commons/math3/analysis/function/Constant.java | 60 +
.../commons/math3/analysis/function/Cos.java | 53 +
.../commons/math3/analysis/function/Cosh.java | 51 +
.../commons/math3/analysis/function/Divide.java | 32 +
.../commons/math3/analysis/function/Exp.java | 53 +
.../commons/math3/analysis/function/Expm1.java | 53 +
.../commons/math3/analysis/function/Floor.java | 33 +
.../commons/math3/analysis/function/Gaussian.java | 259 +
.../analysis/function/HarmonicOscillator.java | 183 +
.../commons/math3/analysis/function/Identity.java | 50 +
.../commons/math3/analysis/function/Inverse.java | 52 +
.../commons/math3/analysis/function/Log.java | 53 +
.../commons/math3/analysis/function/Log10.java | 54 +
.../commons/math3/analysis/function/Log1p.java | 53 +
.../commons/math3/analysis/function/Logistic.java | 228 +
.../commons/math3/analysis/function/Logit.java | 212 +
.../commons/math3/analysis/function/Max.java | 33 +
.../commons/math3/analysis/function/Min.java | 33 +
.../commons/math3/analysis/function/Minus.java | 50 +
.../commons/math3/analysis/function/Multiply.java | 32 +
.../commons/math3/analysis/function/Pow.java | 33 +
.../commons/math3/analysis/function/Power.java | 63 +
.../commons/math3/analysis/function/Rint.java | 33 +
.../commons/math3/analysis/function/Sigmoid.java | 218 +
.../commons/math3/analysis/function/Signum.java | 33 +
.../commons/math3/analysis/function/Sin.java | 51 +
.../commons/math3/analysis/function/Sinc.java | 205 +
.../commons/math3/analysis/function/Sinh.java | 51 +
.../commons/math3/analysis/function/Sqrt.java | 53 +
.../math3/analysis/function/StepFunction.java | 100 +
.../commons/math3/analysis/function/Subtract.java | 32 +
.../commons/math3/analysis/function/Tan.java | 53 +
.../commons/math3/analysis/function/Tanh.java | 53 +
.../commons/math3/analysis/function/Ulp.java | 33 +
.../math3/analysis/function/package-info.java | 26 +
.../BaseAbstractUnivariateIntegrator.java | 280 +
.../IterativeLegendreGaussIntegrator.java | 182 +
.../integration/LegendreGaussIntegrator.java | 265 +
.../analysis/integration/MidPointIntegrator.java | 169 +
.../analysis/integration/RombergIntegrator.java | 142 +
.../analysis/integration/SimpsonIntegrator.java | 129 +
.../analysis/integration/TrapezoidIntegrator.java | 168 +
.../analysis/integration/UnivariateIntegrator.java | 92 +
.../integration/gauss/BaseRuleFactory.java | 153 +
.../integration/gauss/GaussIntegrator.java | 129 +
.../integration/gauss/GaussIntegratorFactory.java | 169 +
.../integration/gauss/HermiteRuleFactory.java | 178 +
.../gauss/LegendreHighPrecisionRuleFactory.java | 215 +
.../integration/gauss/LegendreRuleFactory.java | 140 +
.../gauss/SymmetricGaussIntegrator.java | 103 +
.../analysis/integration/gauss/package-info.java | 22 +
.../math3/analysis/integration/package-info.java | 22 +
.../interpolation/AkimaSplineInterpolator.java | 215 +
.../BicubicInterpolatingFunction.java | 325 ++
.../interpolation/BicubicInterpolator.java | 112 +
.../BicubicSplineInterpolatingFunction.java | 637 ++
.../interpolation/BicubicSplineInterpolator.java | 176 +
.../interpolation/BivariateGridInterpolator.java | 51 +
.../DividedDifferenceInterpolator.java | 119 +
.../interpolation/FieldHermiteInterpolator.java | 209 +
.../interpolation/HermiteInterpolator.java | 239 +
.../analysis/interpolation/LinearInterpolator.java | 79 +
.../analysis/interpolation/LoessInterpolator.java | 473 ++
.../MicrosphereInterpolatingFunction.java | 250 +
.../interpolation/MicrosphereInterpolator.java | 102 +
.../interpolation/MultivariateInterpolator.java | 51 +
.../interpolation/NevilleInterpolator.java | 60 +
...iecewiseBicubicSplineInterpolatingFunction.java | 210 +
.../PiecewiseBicubicSplineInterpolator.java | 61 +
...oothingPolynomialBicubicSplineInterpolator.java | 171 +
.../analysis/interpolation/SplineInterpolator.java | 127 +
.../TricubicInterpolatingFunction.java | 508 ++
.../interpolation/TricubicInterpolator.java | 142 +
.../TricubicSplineInterpolatingFunction.java | 482 ++
.../interpolation/TricubicSplineInterpolator.java | 201 +
.../interpolation/TrivariateGridInterpolator.java | 54 +
.../interpolation/UnivariateInterpolator.java | 41 +
.../UnivariatePeriodicInterpolator.java | 123 +
.../math3/analysis/interpolation/package-info.java | 22 +
.../commons/math3/analysis/package-info.java | 32 +
.../analysis/polynomials/PolynomialFunction.java | 412 ++
.../PolynomialFunctionLagrangeForm.java | 326 ++
.../polynomials/PolynomialFunctionNewtonForm.java | 245 +
.../polynomials/PolynomialSplineFunction.java | 246 +
.../analysis/polynomials/PolynomialsUtils.java | 446 ++
.../math3/analysis/polynomials/package-info.java | 23 +
.../AbstractDifferentiableUnivariateSolver.java | 82 +
.../analysis/solvers/AbstractPolynomialSolver.java | 80 +
.../AbstractUnivariateDifferentiableSolver.java | 82 +
.../analysis/solvers/AbstractUnivariateSolver.java | 60 +
.../math3/analysis/solvers/AllowedSolution.java | 75 +
.../solvers/BaseAbstractUnivariateSolver.java | 318 +
.../math3/analysis/solvers/BaseSecantSolver.java | 278 +
.../analysis/solvers/BaseUnivariateSolver.java | 142 +
.../math3/analysis/solvers/BisectionSolver.java | 91 +
.../solvers/BracketedUnivariateSolver.java | 92 +
.../solvers/BracketingNthOrderBrentSolver.java | 412 ++
.../math3/analysis/solvers/BrentSolver.java | 244 +
.../solvers/DifferentiableUnivariateSolver.java | 30 +
.../math3/analysis/solvers/IllinoisSolver.java | 82 +
.../math3/analysis/solvers/LaguerreSolver.java | 440 ++
.../math3/analysis/solvers/MullerSolver.java | 202 +
.../math3/analysis/solvers/MullerSolver2.java | 168 +
.../analysis/solvers/NewtonRaphsonSolver.java | 92 +
.../math3/analysis/solvers/NewtonSolver.java | 92 +
.../math3/analysis/solvers/PegasusSolver.java | 84 +
.../math3/analysis/solvers/PolynomialSolver.java | 28 +
.../math3/analysis/solvers/RegulaFalsiSolver.java | 94 +
.../math3/analysis/solvers/RiddersSolver.java | 142 +
.../math3/analysis/solvers/SecantSolver.java | 135 +
.../solvers/UnivariateDifferentiableSolver.java | 29 +
.../math3/analysis/solvers/UnivariateSolver.java | 28 +
.../analysis/solvers/UnivariateSolverUtils.java | 465 ++
.../math3/analysis/solvers/package-info.java | 22 +
.../org/apache/commons/math3/complex/Complex.java | 1318 +++++
.../apache/commons/math3/complex/ComplexField.java | 83 +
.../commons/math3/complex/ComplexFormat.java | 427 ++
.../apache/commons/math3/complex/ComplexUtils.java | 86 +
.../apache/commons/math3/complex/Quaternion.java | 464 ++
.../apache/commons/math3/complex/RootsOfUnity.java | 218 +
.../apache/commons/math3/complex/package-info.java | 23 +
.../dfp/BracketingNthOrderBrentSolverDFP.java | 436 ++
.../java/org/apache/commons/math3/dfp/Dfp.java | 2882 +++++++++
.../java/org/apache/commons/math3/dfp/DfpDec.java | 368 ++
.../org/apache/commons/math3/dfp/DfpField.java | 757 +++
.../java/org/apache/commons/math3/dfp/DfpMath.java | 967 +++
.../commons/math3/dfp/UnivariateDfpFunction.java | 39 +
.../org/apache/commons/math3/dfp/package-info.java | 88 +
.../distribution/AbstractIntegerDistribution.java | 253 +
.../AbstractMultivariateRealDistribution.java | 70 +
.../distribution/AbstractRealDistribution.java | 307 +
.../math3/distribution/BetaDistribution.java | 269 +
.../math3/distribution/BinomialDistribution.java | 198 +
.../math3/distribution/CauchyDistribution.java | 256 +
.../math3/distribution/ChiSquaredDistribution.java | 196 +
.../distribution/ConstantRealDistribution.java | 121 +
.../math3/distribution/EnumeratedDistribution.java | 291 +
.../EnumeratedIntegerDistribution.java | 218 +
.../distribution/EnumeratedRealDistribution.java | 282 +
.../distribution/ExponentialDistribution.java | 351 ++
.../commons/math3/distribution/FDistribution.java | 328 ++
.../math3/distribution/GammaDistribution.java | 513 ++
.../math3/distribution/GeometricDistribution.java | 173 +
.../math3/distribution/GumbelDistribution.java | 166 +
.../distribution/HypergeometricDistribution.java | 347 ++
.../math3/distribution/IntegerDistribution.java | 155 +
.../KolmogorovSmirnovDistribution.java | 357 ++
.../math3/distribution/LaplaceDistribution.java | 160 +
.../math3/distribution/LevyDistribution.java | 192 +
.../math3/distribution/LogNormalDistribution.java | 366 ++
.../math3/distribution/LogisticDistribution.java | 160 +
.../MixtureMultivariateNormalDistribution.java | 113 +
.../MixtureMultivariateRealDistribution.java | 171 +
.../MultivariateNormalDistribution.java | 247 +
.../distribution/MultivariateRealDistribution.java | 78 +
.../math3/distribution/NakagamiDistribution.java | 188 +
.../math3/distribution/NormalDistribution.java | 311 +
.../math3/distribution/ParetoDistribution.java | 318 +
.../math3/distribution/PascalDistribution.java | 248 +
.../math3/distribution/PoissonDistribution.java | 395 ++
.../math3/distribution/RealDistribution.java | 196 +
.../math3/distribution/SaddlePointExpansion.java | 200 +
.../commons/math3/distribution/TDistribution.java | 272 +
.../math3/distribution/TriangularDistribution.java | 282 +
.../distribution/UniformIntegerDistribution.java | 181 +
.../distribution/UniformRealDistribution.java | 243 +
.../math3/distribution/WeibullDistribution.java | 353 ++
.../math3/distribution/ZipfDistribution.java | 262 +
...ariateNormalMixtureExpectationMaximization.java | 454 ++
.../math3/distribution/fitting/package-info.java | 20 +
.../commons/math3/distribution/package-info.java | 20 +
.../math3/exception/ConvergenceException.java | 50 +
.../exception/DimensionMismatchException.java | 64 +
.../math3/exception/InsufficientDataException.java | 49 +
.../math3/exception/MathArithmeticException.java | 76 +
.../exception/MathIllegalArgumentException.java | 64 +
.../exception/MathIllegalNumberException.java | 60 +
.../math3/exception/MathIllegalStateException.java | 88 +
.../commons/math3/exception/MathInternalError.java | 57 +
.../math3/exception/MathParseException.java | 56 +
.../math3/exception/MathRuntimeException.java | 65 +
.../MathUnsupportedOperationException.java | 72 +
.../math3/exception/MaxCountExceededException.java | 63 +
.../exception/MultiDimensionMismatchException.java | 90 +
.../math3/exception/NoBracketingException.java | 106 +
.../commons/math3/exception/NoDataException.java | 46 +
.../exception/NonMonotonicSequenceException.java | 120 +
.../math3/exception/NotANumberException.java | 37 +
.../math3/exception/NotFiniteNumberException.java | 54 +
.../math3/exception/NotPositiveException.java | 48 +
.../exception/NotStrictlyPositiveException.java | 49 +
.../math3/exception/NullArgumentException.java | 51 +
.../math3/exception/NumberIsTooLargeException.java | 85 +
.../math3/exception/NumberIsTooSmallException.java | 86 +
.../math3/exception/OutOfRangeException.java | 78 +
.../exception/TooManyEvaluationsException.java | 39 +
.../exception/TooManyIterationsException.java | 39 +
.../commons/math3/exception/ZeroException.java | 48 +
.../commons/math3/exception/package-info.java | 23 +
.../commons/math3/exception/util/ArgUtils.java | 55 +
.../math3/exception/util/DummyLocalizable.java | 57 +
.../math3/exception/util/ExceptionContext.java | 334 ++
.../exception/util/ExceptionContextProvider.java | 33 +
.../commons/math3/exception/util/Localizable.java | 43 +
.../math3/exception/util/LocalizedFormats.java | 412 ++
.../commons/math3/exception/util/package-info.java | 22 +
.../math3/filter/DefaultMeasurementModel.java | 84 +
.../commons/math3/filter/DefaultProcessModel.java | 165 +
.../apache/commons/math3/filter/KalmanFilter.java | 388 ++
.../commons/math3/filter/MeasurementModel.java | 44 +
.../apache/commons/math3/filter/ProcessModel.java | 73 +
.../apache/commons/math3/filter/package-info.java | 20 +
.../commons/math3/fitting/AbstractCurveFitter.java | 147 +
.../apache/commons/math3/fitting/CurveFitter.java | 232 +
.../commons/math3/fitting/GaussianCurveFitter.java | 430 ++
.../commons/math3/fitting/GaussianFitter.java | 364 ++
.../commons/math3/fitting/HarmonicCurveFitter.java | 445 ++
.../commons/math3/fitting/HarmonicFitter.java | 384 ++
.../math3/fitting/PolynomialCurveFitter.java | 131 +
.../commons/math3/fitting/PolynomialFitter.java | 72 +
.../commons/math3/fitting/SimpleCurveFitter.java | 125 +
.../math3/fitting/WeightedObservedPoint.java | 78 +
.../math3/fitting/WeightedObservedPoints.java | 112 +
.../fitting/leastsquares/AbstractEvaluation.java | 87 +
.../leastsquares/DenseWeightedEvaluation.java | 68 +
.../fitting/leastsquares/EvaluationRmsChecker.java | 75 +
.../fitting/leastsquares/GaussNewtonOptimizer.java | 300 +
.../fitting/leastsquares/LeastSquaresAdapter.java | 77 +
.../fitting/leastsquares/LeastSquaresBuilder.java | 226 +
.../fitting/leastsquares/LeastSquaresFactory.java | 528 ++
.../leastsquares/LeastSquaresOptimizer.java | 62 +
.../fitting/leastsquares/LeastSquaresProblem.java | 156 +
.../leastsquares/LevenbergMarquardtOptimizer.java | 1042 ++++
.../leastsquares/MultivariateJacobianFunction.java | 39 +
.../math3/fitting/leastsquares/OptimumImpl.java | 97 +
.../fitting/leastsquares/ParameterValidator.java | 34 +
.../leastsquares/ValueAndJacobianFunction.java | 44 +
.../math3/fitting/leastsquares/package-info.java | 39 +
.../apache/commons/math3/fitting/package-info.java | 26 +
.../commons/math3/fraction/AbstractFormat.java | 209 +
.../apache/commons/math3/fraction/BigFraction.java | 1147 ++++
.../commons/math3/fraction/BigFractionField.java | 82 +
.../commons/math3/fraction/BigFractionFormat.java | 287 +
.../apache/commons/math3/fraction/Fraction.java | 673 +++
.../fraction/FractionConversionException.java | 55 +
.../commons/math3/fraction/FractionField.java | 82 +
.../commons/math3/fraction/FractionFormat.java | 264 +
.../math3/fraction/ProperBigFractionFormat.java | 238 +
.../math3/fraction/ProperFractionFormat.java | 231 +
.../commons/math3/fraction/package-info.java | 22 +
.../math3/genetics/AbstractListChromosome.java | 105 +
.../commons/math3/genetics/BinaryChromosome.java | 96 +
.../commons/math3/genetics/BinaryMutation.java | 56 +
.../apache/commons/math3/genetics/Chromosome.java | 104 +
.../commons/math3/genetics/ChromosomePair.java | 65 +
.../commons/math3/genetics/CrossoverPolicy.java | 38 +
.../commons/math3/genetics/CycleCrossover.java | 182 +
.../math3/genetics/ElitisticListPopulation.java | 117 +
.../org/apache/commons/math3/genetics/Fitness.java | 32 +
.../commons/math3/genetics/FixedElapsedTime.java | 77 +
.../math3/genetics/FixedGenerationCount.java | 71 +
.../commons/math3/genetics/GeneticAlgorithm.java | 233 +
.../genetics/InvalidRepresentationException.java | 42 +
.../commons/math3/genetics/ListPopulation.java | 222 +
.../commons/math3/genetics/MutationPolicy.java | 35 +
.../commons/math3/genetics/NPointCrossover.java | 178 +
.../commons/math3/genetics/OnePointCrossover.java | 128 +
.../commons/math3/genetics/OrderedCrossover.java | 150 +
.../math3/genetics/PermutationChromosome.java | 40 +
.../apache/commons/math3/genetics/Population.java | 59 +
.../apache/commons/math3/genetics/RandomKey.java | 298 +
.../commons/math3/genetics/RandomKeyMutation.java | 54 +
.../commons/math3/genetics/SelectionPolicy.java | 34 +
.../commons/math3/genetics/StoppingCondition.java | 33 +
.../math3/genetics/TournamentSelection.java | 114 +
.../commons/math3/genetics/UniformCrossover.java | 134 +
.../commons/math3/genetics/package-info.java | 20 +
.../org/apache/commons/math3/geometry/Point.java | 46 +
.../org/apache/commons/math3/geometry/Space.java | 42 +
.../org/apache/commons/math3/geometry/Vector.java | 155 +
.../commons/math3/geometry/VectorFormat.java | 290 +
.../commons/math3/geometry/enclosing/Encloser.java | 36 +
.../math3/geometry/enclosing/EnclosingBall.java | 103 +
.../geometry/enclosing/SupportBallGenerator.java | 42 +
.../math3/geometry/enclosing/WelzlEncloser.java | 181 +
.../math3/geometry/enclosing/package-info.java | 24 +
.../math3/geometry/euclidean/oned/Euclidean1D.java | 100 +
.../math3/geometry/euclidean/oned/Interval.java | 129 +
.../geometry/euclidean/oned/IntervalsSet.java | 686 +++
.../geometry/euclidean/oned/OrientedPoint.java | 153 +
.../geometry/euclidean/oned/SubOrientedPoint.java | 76 +
.../math3/geometry/euclidean/oned/Vector1D.java | 356 ++
.../geometry/euclidean/oned/Vector1DFormat.java | 135 +
.../geometry/euclidean/oned/package-info.java | 24 +
.../threed/CardanEulerSingularityException.java | 44 +
.../geometry/euclidean/threed/Euclidean3D.java | 74 +
.../geometry/euclidean/threed/FieldRotation.java | 1183 ++++
.../geometry/euclidean/threed/FieldVector3D.java | 1185 ++++
.../math3/geometry/euclidean/threed/Line.java | 275 +
.../threed/NotARotationMatrixException.java | 47 +
.../euclidean/threed/OutlineExtractor.java | 263 +
.../math3/geometry/euclidean/threed/Plane.java | 527 ++
.../geometry/euclidean/threed/PolyhedronsSet.java | 738 +++
.../math3/geometry/euclidean/threed/Rotation.java | 1053 ++++
.../geometry/euclidean/threed/RotationOrder.java | 174 +
.../math3/geometry/euclidean/threed/Segment.java | 66 +
.../geometry/euclidean/threed/SphereGenerator.java | 152 +
.../euclidean/threed/SphericalCoordinates.java | 395 ++
.../math3/geometry/euclidean/threed/SubLine.java | 165 +
.../math3/geometry/euclidean/threed/SubPlane.java | 144 +
.../math3/geometry/euclidean/threed/Vector3D.java | 588 ++
.../geometry/euclidean/threed/Vector3DFormat.java | 155 +
.../geometry/euclidean/threed/package-info.java | 24 +
.../geometry/euclidean/twod/DiskGenerator.java | 108 +
.../math3/geometry/euclidean/twod/Euclidean2D.java | 74 +
.../math3/geometry/euclidean/twod/Line.java | 540 ++
.../math3/geometry/euclidean/twod/NestedLoops.java | 200 +
.../math3/geometry/euclidean/twod/PolygonsSet.java | 1160 ++++
.../math3/geometry/euclidean/twod/Segment.java | 112 +
.../math3/geometry/euclidean/twod/SubLine.java | 233 +
.../math3/geometry/euclidean/twod/Vector2D.java | 460 ++
.../geometry/euclidean/twod/Vector2DFormat.java | 138 +
.../twod/hull/AbstractConvexHullGenerator2D.java | 116 +
.../euclidean/twod/hull/AklToussaintHeuristic.java | 153 +
.../geometry/euclidean/twod/hull/ConvexHull2D.java | 172 +
.../euclidean/twod/hull/ConvexHullGenerator2D.java | 37 +
.../euclidean/twod/hull/MonotoneChain.java | 179 +
.../geometry/euclidean/twod/hull/package-info.java | 25 +
.../geometry/euclidean/twod/package-info.java | 24 +
.../commons/math3/geometry/hull/ConvexHull.java | 48 +
.../math3/geometry/hull/ConvexHullGenerator.java | 49 +
.../commons/math3/geometry/hull/package-info.java | 24 +
.../commons/math3/geometry/package-info.java | 25 +
.../geometry/partitioning/AbstractRegion.java | 533 ++
.../partitioning/AbstractSubHyperplane.java | 188 +
.../math3/geometry/partitioning/BSPTree.java | 820 +++
.../geometry/partitioning/BSPTreeVisitor.java | 114 +
.../geometry/partitioning/BoundaryAttribute.java | 116 +
.../geometry/partitioning/BoundaryBuilder.java | 95 +
.../geometry/partitioning/BoundaryProjection.java | 83 +
.../geometry/partitioning/BoundaryProjector.java | 200 +
.../geometry/partitioning/BoundarySizeVisitor.java | 65 +
.../geometry/partitioning/Characterization.java | 190 +
.../math3/geometry/partitioning/Embedding.java | 68 +
.../math3/geometry/partitioning/Hyperplane.java | 98 +
.../math3/geometry/partitioning/InsideFinder.java | 150 +
.../math3/geometry/partitioning/NodesSet.java | 72 +
.../math3/geometry/partitioning/Region.java | 218 +
.../math3/geometry/partitioning/RegionFactory.java | 349 ++
.../commons/math3/geometry/partitioning/Side.java | 37 +
.../math3/geometry/partitioning/SubHyperplane.java | 131 +
.../math3/geometry/partitioning/Transform.java | 80 +
.../math3/geometry/partitioning/package-info.java | 114 +
.../geometry/partitioning/utilities/AVLTree.java | 634 ++
.../partitioning/utilities/OrderedTuple.java | 431 ++
.../utilities/doc-files/OrderedTuple.png | Bin 0 -> 28882 bytes
.../partitioning/utilities/package-info.java | 24 +
.../commons/math3/geometry/spherical/oned/Arc.java | 132 +
.../math3/geometry/spherical/oned/ArcsSet.java | 962 +++
.../math3/geometry/spherical/oned/LimitAngle.java | 127 +
.../math3/geometry/spherical/oned/S1Point.java | 157 +
.../math3/geometry/spherical/oned/Sphere1D.java | 106 +
.../geometry/spherical/oned/SubLimitAngle.java | 74 +
.../geometry/spherical/oned/package-info.java | 30 +
.../math3/geometry/spherical/twod/Circle.java | 326 ++
.../math3/geometry/spherical/twod/Edge.java | 222 +
.../geometry/spherical/twod/EdgesBuilder.java | 169 +
.../spherical/twod/PropertiesComputer.java | 173 +
.../math3/geometry/spherical/twod/S2Point.java | 237 +
.../math3/geometry/spherical/twod/Sphere2D.java | 80 +
.../spherical/twod/SphericalPolygonsSet.java | 563 ++
.../math3/geometry/spherical/twod/SubCircle.java | 94 +
.../math3/geometry/spherical/twod/Vertex.java | 124 +
.../geometry/spherical/twod/package-info.java | 30 +
.../commons/math3/linear/AbstractFieldMatrix.java | 1156 ++++
.../commons/math3/linear/AbstractRealMatrix.java | 992 ++++
.../org/apache/commons/math3/linear/AnyMatrix.java | 47 +
.../math3/linear/Array2DRowFieldMatrix.java | 612 ++
.../commons/math3/linear/Array2DRowRealMatrix.java | 548 ++
.../commons/math3/linear/ArrayFieldVector.java | 1147 ++++
.../commons/math3/linear/ArrayRealVector.java | 954 +++
.../math3/linear/BiDiagonalTransformer.java | 380 ++
.../commons/math3/linear/BlockFieldMatrix.java | 1592 +++++
.../commons/math3/linear/BlockRealMatrix.java | 1581 +++++
.../math3/linear/CholeskyDecomposition.java | 310 +
.../commons/math3/linear/ConjugateGradient.java | 235 +
.../commons/math3/linear/DecompositionSolver.java | 97 +
.../linear/DefaultFieldMatrixChangingVisitor.java | 58 +
.../DefaultFieldMatrixPreservingVisitor.java | 56 +
.../linear/DefaultIterativeLinearSolverEvent.java | 143 +
.../linear/DefaultRealMatrixChangingVisitor.java | 44 +
.../linear/DefaultRealMatrixPreservingVisitor.java | 42 +
.../commons/math3/linear/DiagonalMatrix.java | 370 ++
.../commons/math3/linear/EigenDecomposition.java | 970 +++
.../math3/linear/FieldDecompositionSolver.java | 75 +
.../commons/math3/linear/FieldLUDecomposition.java | 444 ++
.../apache/commons/math3/linear/FieldMatrix.java | 816 +++
.../math3/linear/FieldMatrixChangingVisitor.java | 57 +
.../math3/linear/FieldMatrixPreservingVisitor.java | 56 +
.../apache/commons/math3/linear/FieldVector.java | 298 +
.../math3/linear/FieldVectorChangingVisitor.java | 56 +
.../math3/linear/FieldVectorPreservingVisitor.java | 55 +
.../math3/linear/HessenbergTransformer.java | 232 +
.../linear/IllConditionedOperatorException.java | 42 +
.../math3/linear/IterativeLinearSolver.java | 173 +
.../math3/linear/IterativeLinearSolverEvent.java | 115 +
.../commons/math3/linear/JacobiPreconditioner.java | 135 +
.../commons/math3/linear/LUDecomposition.java | 390 ++
.../linear/MatrixDimensionMismatchException.java | 73 +
.../apache/commons/math3/linear/MatrixUtils.java | 1119 ++++
.../linear/NonPositiveDefiniteMatrixException.java | 73 +
.../NonPositiveDefiniteOperatorException.java | 43 +
.../linear/NonSelfAdjointOperatorException.java | 46 +
.../math3/linear/NonSquareMatrixException.java | 41 +
.../math3/linear/NonSquareOperatorException.java | 40 +
.../math3/linear/NonSymmetricMatrixException.java | 71 +
.../commons/math3/linear/OpenMapRealMatrix.java | 310 +
.../commons/math3/linear/OpenMapRealVector.java | 832 +++
.../PreconditionedIterativeLinearSolver.java | 214 +
.../commons/math3/linear/QRDecomposition.java | 476 ++
.../commons/math3/linear/RRQRDecomposition.java | 244 +
.../commons/math3/linear/RealLinearOperator.java | 109 +
.../apache/commons/math3/linear/RealMatrix.java | 828 +++
.../math3/linear/RealMatrixChangingVisitor.java | 55 +
.../commons/math3/linear/RealMatrixFormat.java | 394 ++
.../math3/linear/RealMatrixPreservingVisitor.java | 54 +
.../apache/commons/math3/linear/RealVector.java | 1617 +++++
.../math3/linear/RealVectorChangingVisitor.java | 58 +
.../commons/math3/linear/RealVectorFormat.java | 288 +
.../math3/linear/RealVectorPreservingVisitor.java | 57 +
.../linear/RectangularCholeskyDecomposition.java | 195 +
.../commons/math3/linear/SchurTransformer.java | 453 ++
.../math3/linear/SingularMatrixException.java | 37 +
.../math3/linear/SingularOperatorException.java | 38 +
.../math3/linear/SingularValueDecomposition.java | 740 +++
.../commons/math3/linear/SparseFieldMatrix.java | 187 +
.../commons/math3/linear/SparseFieldVector.java | 793 +++
.../commons/math3/linear/SparseRealMatrix.java | 34 +
.../commons/math3/linear/SparseRealVector.java | 31 +
.../org/apache/commons/math3/linear/SymmLQ.java | 1221 ++++
.../math3/linear/TriDiagonalTransformer.java | 253 +
.../apache/commons/math3/linear/package-info.java | 20 +
.../math3/ml/clustering/CentroidCluster.java | 53 +
.../commons/math3/ml/clustering/Cluster.java | 60 +
.../commons/math3/ml/clustering/Clusterable.java | 32 +
.../commons/math3/ml/clustering/Clusterer.java | 80 +
.../math3/ml/clustering/DBSCANClusterer.java | 233 +
.../commons/math3/ml/clustering/DoublePoint.java | 86 +
.../math3/ml/clustering/FuzzyKMeansClusterer.java | 426 ++
.../ml/clustering/KMeansPlusPlusClusterer.java | 565 ++
.../clustering/MultiKMeansPlusPlusClusterer.java | 135 +
.../ml/clustering/evaluation/ClusterEvaluator.java | 122 +
.../evaluation/SumOfClusterVariances.java | 68 +
.../ml/clustering/evaluation/package-info.java | 20 +
.../commons/math3/ml/clustering/package-info.java | 20 +
.../math3/ml/distance/CanberraDistance.java | 42 +
.../math3/ml/distance/ChebyshevDistance.java | 36 +
.../commons/math3/ml/distance/DistanceMeasure.java | 38 +
.../math3/ml/distance/EarthMoversDistance.java | 44 +
.../math3/ml/distance/EuclideanDistance.java | 36 +
.../math3/ml/distance/ManhattanDistance.java | 36 +
.../commons/math3/ml/distance/package-info.java | 20 +
.../math3/ml/neuralnet/FeatureInitializer.java | 32 +
.../ml/neuralnet/FeatureInitializerFactory.java | 114 +
.../commons/math3/ml/neuralnet/MapUtils.java | 247 +
.../apache/commons/math3/ml/neuralnet/Network.java | 474 ++
.../apache/commons/math3/ml/neuralnet/Neuron.java | 215 +
.../math3/ml/neuralnet/SquareNeighbourhood.java | 38 +
.../commons/math3/ml/neuralnet/UpdateAction.java | 34 +
.../math3/ml/neuralnet/oned/NeuronString.java | 238 +
.../math3/ml/neuralnet/oned/package-info.java | 22 +
.../commons/math3/ml/neuralnet/package-info.java | 22 +
.../ml/neuralnet/sofm/KohonenTrainingTask.java | 59 +
.../ml/neuralnet/sofm/KohonenUpdateAction.java | 212 +
.../ml/neuralnet/sofm/LearningFactorFunction.java | 34 +
.../sofm/LearningFactorFunctionFactory.java | 117 +
.../neuralnet/sofm/NeighbourhoodSizeFunction.java | 37 +
.../sofm/NeighbourhoodSizeFunctionFactory.java | 107 +
.../math3/ml/neuralnet/sofm/package-info.java | 22 +
.../sofm/util/ExponentialDecayFunction.java | 83 +
.../sofm/util/QuasiSigmoidDecayFunction.java | 87 +
.../math3/ml/neuralnet/sofm/util/package-info.java | 22 +
.../ml/neuralnet/twod/NeuronSquareMesh2D.java | 435 ++
.../math3/ml/neuralnet/twod/package-info.java | 22 +
.../org/apache/commons/math3/ml/package-info.java | 20 +
.../commons/math3/ode/AbstractIntegrator.java | 457 ++
.../commons/math3/ode/AbstractParameterizable.java | 77 +
.../commons/math3/ode/ContinuousOutputModel.java | 443 ++
.../apache/commons/math3/ode/EquationsMapper.java | 97 +
.../commons/math3/ode/ExpandableStatefulODE.java | 330 ++
.../commons/math3/ode/FirstOrderConverter.java | 114 +
.../math3/ode/FirstOrderDifferentialEquations.java | 68 +
.../commons/math3/ode/FirstOrderIntegrator.java | 66 +
.../apache/commons/math3/ode/JacobianMatrices.java | 492 ++
.../math3/ode/MainStateJacobianProvider.java | 41 +
.../commons/math3/ode/MultistepIntegrator.java | 447 ++
.../apache/commons/math3/ode/ODEIntegrator.java | 158 +
.../commons/math3/ode/ParameterConfiguration.java | 67 +
.../math3/ode/ParameterJacobianProvider.java | 48 +
.../math3/ode/ParameterJacobianWrapper.java | 99 +
.../apache/commons/math3/ode/Parameterizable.java | 42 +
.../apache/commons/math3/ode/ParameterizedODE.java | 42 +
.../commons/math3/ode/ParameterizedWrapper.java | 84 +
.../ode/SecondOrderDifferentialEquations.java | 64 +
.../commons/math3/ode/SecondOrderIntegrator.java | 60 +
.../commons/math3/ode/SecondaryEquations.java | 61 +
.../math3/ode/UnknownParameterException.java | 52 +
.../commons/math3/ode/events/EventFilter.java | 204 +
.../commons/math3/ode/events/EventHandler.java | 219 +
.../commons/math3/ode/events/EventState.java | 419 ++
.../commons/math3/ode/events/FilterType.java | 400 ++
.../commons/math3/ode/events/Transformer.java | 107 +
.../commons/math3/ode/events/package-info.java | 96 +
.../ode/nonstiff/AdamsBashforthIntegrator.java | 325 ++
.../math3/ode/nonstiff/AdamsIntegrator.java | 136 +
.../math3/ode/nonstiff/AdamsMoultonIntegrator.java | 421 ++
.../ode/nonstiff/AdamsNordsieckTransformer.java | 339 ++
.../ode/nonstiff/AdaptiveStepsizeIntegrator.java | 375 ++
.../nonstiff/ClassicalRungeKuttaIntegrator.java | 75 +
.../ClassicalRungeKuttaStepInterpolator.java | 133 +
.../ode/nonstiff/DormandPrince54Integrator.java | 161 +
.../nonstiff/DormandPrince54StepInterpolator.java | 222 +
.../ode/nonstiff/DormandPrince853Integrator.java | 286 +
.../nonstiff/DormandPrince853StepInterpolator.java | 498 ++
.../ode/nonstiff/EmbeddedRungeKuttaIntegrator.java | 380 ++
.../math3/ode/nonstiff/EulerIntegrator.java | 72 +
.../math3/ode/nonstiff/EulerStepInterpolator.java | 99 +
.../commons/math3/ode/nonstiff/GillIntegrator.java | 74 +
.../math3/ode/nonstiff/GillStepInterpolator.java | 148 +
.../ode/nonstiff/GraggBulirschStoerIntegrator.java | 949 +++
.../GraggBulirschStoerStepInterpolator.java | 405 ++
.../math3/ode/nonstiff/HighamHall54Integrator.java | 135 +
.../ode/nonstiff/HighamHall54StepInterpolator.java | 119 +
.../math3/ode/nonstiff/LutherIntegrator.java | 89 +
.../math3/ode/nonstiff/LutherStepInterpolator.java | 179 +
.../math3/ode/nonstiff/MidpointIntegrator.java | 69 +
.../ode/nonstiff/MidpointStepInterpolator.java | 113 +
.../math3/ode/nonstiff/RungeKuttaIntegrator.java | 269 +
.../ode/nonstiff/RungeKuttaStepInterpolator.java | 211 +
.../ode/nonstiff/ThreeEighthesIntegrator.java | 72 +
.../nonstiff/ThreeEighthesStepInterpolator.java | 143 +
.../commons/math3/ode/nonstiff/package-info.java | 25 +
.../org/apache/commons/math3/ode/package-info.java | 164 +
.../ode/sampling/AbstractStepInterpolator.java | 605 ++
.../math3/ode/sampling/DummyStepHandler.java | 89 +
.../math3/ode/sampling/FixedStepHandler.java | 71 +
.../ode/sampling/NordsieckStepInterpolator.java | 293 +
.../commons/math3/ode/sampling/StepHandler.java | 75 +
.../math3/ode/sampling/StepInterpolator.java | 181 +
.../commons/math3/ode/sampling/StepNormalizer.java | 300 +
.../math3/ode/sampling/StepNormalizerBounds.java | 83 +
.../math3/ode/sampling/StepNormalizerMode.java | 69 +
.../commons/math3/ode/sampling/package-info.java | 60 +
.../math3/optim/AbstractConvergenceChecker.java | 69 +
.../math3/optim/AbstractOptimizationProblem.java | 102 +
.../optim/BaseMultiStartMultivariateOptimizer.java | 229 +
.../math3/optim/BaseMultivariateOptimizer.java | 155 +
.../apache/commons/math3/optim/BaseOptimizer.java | 260 +
.../commons/math3/optim/ConvergenceChecker.java | 55 +
.../apache/commons/math3/optim/InitialGuess.java | 46 +
.../org/apache/commons/math3/optim/MaxEval.java | 61 +
.../org/apache/commons/math3/optim/MaxIter.java | 61 +
.../commons/math3/optim/OptimizationData.java | 28 +
.../commons/math3/optim/OptimizationProblem.java | 53 +
.../apache/commons/math3/optim/PointValuePair.java | 121 +
.../commons/math3/optim/PointVectorValuePair.java | 146 +
.../apache/commons/math3/optim/SimpleBounds.java | 79 +
.../commons/math3/optim/SimplePointChecker.java | 133 +
.../commons/math3/optim/SimpleValueChecker.java | 125 +
.../math3/optim/SimpleVectorValueChecker.java | 134 +
.../math3/optim/linear/LinearConstraint.java | 228 +
.../math3/optim/linear/LinearConstraintSet.java | 63 +
.../optim/linear/LinearObjectiveFunction.java | 148 +
.../math3/optim/linear/LinearOptimizer.java | 131 +
.../optim/linear/NoFeasibleSolutionException.java | 37 +
.../math3/optim/linear/NonNegativeConstraint.java | 47 +
.../math3/optim/linear/PivotSelectionRule.java | 38 +
.../commons/math3/optim/linear/Relationship.java | 64 +
.../commons/math3/optim/linear/SimplexSolver.java | 407 ++
.../commons/math3/optim/linear/SimplexTableau.java | 711 +++
.../math3/optim/linear/SolutionCallback.java | 62 +
.../optim/linear/UnboundedSolutionException.java | 37 +
.../commons/math3/optim/linear/package-info.java | 21 +
.../math3/optim/nonlinear/scalar/GoalType.java | 32 +
.../scalar/GradientMultivariateOptimizer.java | 102 +
.../nonlinear/scalar/LeastSquaresConverter.java | 186 +
.../math3/optim/nonlinear/scalar/LineSearch.java | 137 +
.../scalar/MultiStartMultivariateOptimizer.java | 110 +
.../scalar/MultivariateFunctionMappingAdapter.java | 294 +
.../scalar/MultivariateFunctionPenaltyAdapter.java | 186 +
.../nonlinear/scalar/MultivariateOptimizer.java | 117 +
.../optim/nonlinear/scalar/ObjectiveFunction.java | 46 +
.../scalar/ObjectiveFunctionGradient.java | 46 +
.../NonLinearConjugateGradientOptimizer.java | 415 ++
.../nonlinear/scalar/gradient/Preconditioner.java | 44 +
.../nonlinear/scalar/gradient/package-info.java | 21 +
.../nonlinear/scalar/noderiv/AbstractSimplex.java | 345 ++
.../nonlinear/scalar/noderiv/BOBYQAOptimizer.java | 2460 ++++++++
.../nonlinear/scalar/noderiv/CMAESOptimizer.java | 1354 +++++
.../scalar/noderiv/MultiDirectionalSimplex.java | 215 +
.../scalar/noderiv/NelderMeadSimplex.java | 280 +
.../nonlinear/scalar/noderiv/PowellOptimizer.java | 299 +
.../nonlinear/scalar/noderiv/SimplexOptimizer.java | 220 +
.../nonlinear/scalar/noderiv/package-info.java | 21 +
.../math3/optim/nonlinear/scalar/package-info.java | 21 +
.../JacobianMultivariateVectorOptimizer.java | 116 +
.../optim/nonlinear/vector/ModelFunction.java | 51 +
.../nonlinear/vector/ModelFunctionJacobian.java | 51 +
.../MultiStartMultivariateVectorOptimizer.java | 121 +
.../vector/MultivariateVectorOptimizer.java | 167 +
.../math3/optim/nonlinear/vector/Target.java | 54 +
.../math3/optim/nonlinear/vector/Weight.java | 71 +
.../jacobian/AbstractLeastSquaresOptimizer.java | 281 +
.../vector/jacobian/GaussNewtonOptimizer.java | 183 +
.../jacobian/LevenbergMarquardtOptimizer.java | 961 +++
.../nonlinear/vector/jacobian/package-info.java | 26 +
.../math3/optim/nonlinear/vector/package-info.java | 26 +
.../apache/commons/math3/optim/package-info.java | 77 +
.../math3/optim/univariate/BracketFinder.java | 290 +
.../math3/optim/univariate/BrentOptimizer.java | 314 +
.../univariate/MultiStartUnivariateOptimizer.java | 227 +
.../math3/optim/univariate/SearchInterval.java | 95 +
.../univariate/SimpleUnivariateValueChecker.java | 127 +
.../univariate/UnivariateObjectiveFunction.java | 46 +
.../optim/univariate/UnivariateOptimizer.java | 151 +
.../optim/univariate/UnivariatePointValuePair.java | 66 +
.../math3/optim/univariate/package-info.java | 21 +
.../optimization/AbstractConvergenceChecker.java | 102 +
.../BaseMultivariateMultiStartOptimizer.java | 192 +
.../optimization/BaseMultivariateOptimizer.java | 61 +
.../BaseMultivariateSimpleBoundsOptimizer.java | 65 +
.../BaseMultivariateVectorMultiStartOptimizer.java | 204 +
.../BaseMultivariateVectorOptimizer.java | 63 +
.../commons/math3/optimization/BaseOptimizer.java | 61 +
.../math3/optimization/ConvergenceChecker.java | 57 +
...ferentiableMultivariateMultiStartOptimizer.java | 52 +
.../DifferentiableMultivariateOptimizer.java | 37 +
...iableMultivariateVectorMultiStartOptimizer.java | 53 +
.../DifferentiableMultivariateVectorOptimizer.java | 32 +
.../commons/math3/optimization/GoalType.java | 37 +
.../commons/math3/optimization/InitialGuess.java | 48 +
.../math3/optimization/LeastSquaresConverter.java | 182 +
...tivariateDifferentiableMultiStartOptimizer.java | 52 +
.../MultivariateDifferentiableOptimizer.java | 37 +
...ateDifferentiableVectorMultiStartOptimizer.java | 53 +
.../MultivariateDifferentiableVectorOptimizer.java | 32 +
.../MultivariateMultiStartOptimizer.java | 52 +
.../math3/optimization/MultivariateOptimizer.java | 35 +
.../math3/optimization/OptimizationData.java | 30 +
.../commons/math3/optimization/PointValuePair.java | 128 +
.../math3/optimization/PointVectorValuePair.java | 151 +
.../commons/math3/optimization/SimpleBounds.java | 63 +
.../math3/optimization/SimplePointChecker.java | 145 +
.../math3/optimization/SimpleValueChecker.java | 136 +
.../optimization/SimpleVectorValueChecker.java | 145 +
.../apache/commons/math3/optimization/Target.java | 50 +
.../apache/commons/math3/optimization/Weight.java | 68 +
.../math3/optimization/direct/AbstractSimplex.java | 347 ++
.../math3/optimization/direct/BOBYQAOptimizer.java | 2465 ++++++++
.../direct/BaseAbstractMultivariateOptimizer.java | 318 +
...eAbstractMultivariateSimpleBoundsOptimizer.java | 82 +
.../BaseAbstractMultivariateVectorOptimizer.java | 370 ++
.../math3/optimization/direct/CMAESOptimizer.java | 1441 +++++
.../direct/MultiDirectionalSimplex.java | 218 +
.../direct/MultivariateFunctionMappingAdapter.java | 301 +
.../direct/MultivariateFunctionPenaltyAdapter.java | 190 +
.../optimization/direct/NelderMeadSimplex.java | 283 +
.../math3/optimization/direct/PowellOptimizer.java | 352 ++
.../optimization/direct/SimplexOptimizer.java | 233 +
.../math3/optimization/direct/package-info.java | 24 +
.../math3/optimization/fitting/CurveFitter.java | 298 +
.../math3/optimization/fitting/GaussianFitter.java | 365 ++
.../math3/optimization/fitting/HarmonicFitter.java | 384 ++
.../optimization/fitting/PolynomialFitter.java | 111 +
.../fitting/WeightedObservedPoint.java | 76 +
.../math3/optimization/fitting/package-info.java | 30 +
.../general/AbstractDifferentiableOptimizer.java | 90 +
.../general/AbstractLeastSquaresOptimizer.java | 577 ++
.../AbstractScalarDifferentiableOptimizer.java | 114 +
.../general/ConjugateGradientFormula.java | 50 +
.../optimization/general/GaussNewtonOptimizer.java | 194 +
.../general/LevenbergMarquardtOptimizer.java | 943 +++
.../NonLinearConjugateGradientOptimizer.java | 311 +
.../math3/optimization/general/Preconditioner.java | 46 +
.../math3/optimization/general/package-info.java | 22 +
.../linear/AbstractLinearOptimizer.java | 162 +
.../optimization/linear/LinearConstraint.java | 234 +
.../linear/LinearObjectiveFunction.java | 148 +
.../math3/optimization/linear/LinearOptimizer.java | 92 +
.../linear/NoFeasibleSolutionException.java | 42 +
.../math3/optimization/linear/Relationship.java | 67 +
.../math3/optimization/linear/SimplexSolver.java | 238 +
.../math3/optimization/linear/SimplexTableau.java | 635 ++
.../linear/UnboundedSolutionException.java | 42 +
.../math3/optimization/linear/package-info.java | 22 +
.../commons/math3/optimization/package-info.java | 79 +
.../BaseAbstractUnivariateOptimizer.java | 162 +
.../univariate/BaseUnivariateOptimizer.java | 86 +
.../optimization/univariate/BracketFinder.java | 289 +
.../optimization/univariate/BrentOptimizer.java | 316 +
.../univariate/SimpleUnivariateValueChecker.java | 139 +
.../univariate/UnivariateMultiStartOptimizer.java | 202 +
.../univariate/UnivariateOptimizer.java | 29 +
.../univariate/UnivariatePointValuePair.java | 68 +
.../optimization/univariate/package-info.java | 22 +
.../org/apache/commons/math3/package-info.java | 20 +
.../apache/commons/math3/primes/PollardRho.java | 164 +
.../org/apache/commons/math3/primes/Primes.java | 129 +
.../apache/commons/math3/primes/SmallPrimes.java | 188 +
.../apache/commons/math3/primes/package-info.java | 20 +
.../math3/random/AbstractRandomGenerator.java | 271 +
.../apache/commons/math3/random/AbstractWell.java | 187 +
.../commons/math3/random/BitsStreamGenerator.java | 197 +
.../random/CorrelatedRandomVectorGenerator.java | 184 +
.../math3/random/EmpiricalDistribution.java | 846 +++
.../math3/random/GaussianRandomGenerator.java | 46 +
.../math3/random/HaltonSequenceGenerator.java | 183 +
.../apache/commons/math3/random/ISAACRandom.java | 273 +
.../commons/math3/random/JDKRandomGenerator.java | 41 +
.../commons/math3/random/MersenneTwister.java | 264 +
.../math3/random/NormalizedRandomGenerator.java | 37 +
.../apache/commons/math3/random/RandomAdaptor.java | 197 +
.../apache/commons/math3/random/RandomData.java | 264 +
.../commons/math3/random/RandomDataGenerator.java | 782 +++
.../commons/math3/random/RandomDataImpl.java | 585 ++
.../commons/math3/random/RandomGenerator.java | 147 +
.../math3/random/RandomGeneratorFactory.java | 121 +
.../math3/random/RandomVectorGenerator.java | 34 +
.../math3/random/SobolSequenceGenerator.java | 325 ++
.../math3/random/StableRandomGenerator.java | 134 +
.../math3/random/SynchronizedRandomGenerator.java | 121 +
.../random/UncorrelatedRandomVectorGenerator.java | 92 +
.../math3/random/UniformRandomGenerator.java | 57 +
.../random/UnitSphereRandomVectorGenerator.java | 80 +
.../apache/commons/math3/random/ValueServer.java | 458 ++
.../org/apache/commons/math3/random/Well1024a.java | 105 +
.../apache/commons/math3/random/Well19937a.java | 107 +
.../apache/commons/math3/random/Well19937c.java | 114 +
.../apache/commons/math3/random/Well44497a.java | 110 +
.../apache/commons/math3/random/Well44497b.java | 118 +
.../org/apache/commons/math3/random/Well512a.java | 106 +
.../apache/commons/math3/random/package-info.java | 132 +
.../org/apache/commons/math3/special/BesselJ.java | 648 ++
.../org/apache/commons/math3/special/Beta.java | 511 ++
.../java/org/apache/commons/math3/special/Erf.java | 243 +
.../org/apache/commons/math3/special/Gamma.java | 710 +++
.../apache/commons/math3/special/package-info.java | 20 +
.../org/apache/commons/math3/stat/Frequency.java | 684 +++
.../org/apache/commons/math3/stat/StatUtils.java | 887 +++
.../commons/math3/stat/clustering/Cluster.java | 76 +
.../commons/math3/stat/clustering/Clusterable.java | 48 +
.../math3/stat/clustering/DBSCANClusterer.java | 226 +
.../stat/clustering/EuclideanDoublePoint.java | 100 +
.../stat/clustering/EuclideanIntegerPoint.java | 101 +
.../stat/clustering/KMeansPlusPlusClusterer.java | 514 ++
.../math3/stat/clustering/package-info.java | 29 +
.../commons/math3/stat/correlation/Covariance.java | 295 +
.../stat/correlation/KendallsCorrelation.java | 271 +
.../stat/correlation/PearsonsCorrelation.java | 330 ++
.../stat/correlation/SpearmansCorrelation.java | 259 +
.../correlation/StorelessBivariateCovariance.java | 138 +
.../stat/correlation/StorelessCovariance.java | 229 +
.../math3/stat/correlation/package-info.java | 22 +
.../AbstractStorelessUnivariateStatistic.java | 187 +
.../descriptive/AbstractUnivariateStatistic.java | 263 +
.../descriptive/AggregateSummaryStatistics.java | 420 ++
.../stat/descriptive/DescriptiveStatistics.java | 774 +++
.../descriptive/MultivariateSummaryStatistics.java | 635 ++
.../StatisticalMultivariateSummary.java | 119 +
.../math3/stat/descriptive/StatisticalSummary.java | 64 +
.../stat/descriptive/StatisticalSummaryValues.java | 186 +
.../descriptive/StorelessUnivariateStatistic.java | 87 +
.../math3/stat/descriptive/SummaryStatistics.java | 765 +++
.../SynchronizedDescriptiveStatistics.java | 192 +
.../SynchronizedMultivariateSummaryStatistics.java | 297 +
.../descriptive/SynchronizedSummaryStatistics.java | 366 ++
.../stat/descriptive/UnivariateStatistic.java | 55 +
.../math3/stat/descriptive/WeightedEvaluation.java | 57 +
.../math3/stat/descriptive/moment/FirstMoment.java | 169 +
.../stat/descriptive/moment/FourthMoment.java | 151 +
.../stat/descriptive/moment/GeometricMean.java | 214 +
.../math3/stat/descriptive/moment/Kurtosis.java | 226 +
.../math3/stat/descriptive/moment/Mean.java | 286 +
.../stat/descriptive/moment/SecondMoment.java | 134 +
.../stat/descriptive/moment/SemiVariance.java | 369 ++
.../math3/stat/descriptive/moment/Skewness.java | 223 +
.../stat/descriptive/moment/StandardDeviation.java | 280 +
.../math3/stat/descriptive/moment/ThirdMoment.java | 148 +
.../math3/stat/descriptive/moment/Variance.java | 627 ++
.../descriptive/moment/VectorialCovariance.java | 157 +
.../stat/descriptive/moment/VectorialMean.java | 105 +
.../stat/descriptive/moment/package-info.java | 20 +
.../math3/stat/descriptive/package-info.java | 44 +
.../commons/math3/stat/descriptive/rank/Max.java | 171 +
.../math3/stat/descriptive/rank/Median.java | 97 +
.../commons/math3/stat/descriptive/rank/Min.java | 171 +
.../stat/descriptive/rank/PSquarePercentile.java | 996 ++++
.../math3/stat/descriptive/rank/Percentile.java | 1072 ++++
.../math3/stat/descriptive/rank/package-info.java | 20 +
.../math3/stat/descriptive/summary/Product.java | 230 +
.../math3/stat/descriptive/summary/Sum.java | 226 +
.../math3/stat/descriptive/summary/SumOfLogs.java | 170 +
.../stat/descriptive/summary/SumOfSquares.java | 159 +
.../stat/descriptive/summary/package-info.java | 20 +
.../stat/inference/AlternativeHypothesis.java | 40 +
.../commons/math3/stat/inference/BinomialTest.java | 160 +
.../math3/stat/inference/ChiSquareTest.java | 602 ++
.../apache/commons/math3/stat/inference/GTest.java | 538 ++
.../stat/inference/KolmogorovSmirnovTest.java | 998 ++++
.../math3/stat/inference/MannWhitneyUTest.java | 238 +
.../commons/math3/stat/inference/OneWayAnova.java | 355 ++
.../apache/commons/math3/stat/inference/TTest.java | 1184 ++++
.../commons/math3/stat/inference/TestUtils.java | 547 ++
.../stat/inference/WilcoxonSignedRankTest.java | 325 ++
.../commons/math3/stat/inference/package-info.java | 22 +
.../math3/stat/interval/AgrestiCoullInterval.java | 48 +
.../stat/interval/BinomialConfidenceInterval.java | 62 +
.../stat/interval/ClopperPearsonInterval.java | 58 +
.../math3/stat/interval/ConfidenceInterval.java | 109 +
.../commons/math3/stat/interval/IntervalUtils.java | 174 +
.../stat/interval/NormalApproximationInterval.java | 44 +
.../math3/stat/interval/WilsonScoreInterval.java | 52 +
.../commons/math3/stat/interval/package-info.java | 22 +
.../apache/commons/math3/stat/package-info.java | 20 +
.../commons/math3/stat/ranking/NaNStrategy.java | 55 +
.../commons/math3/stat/ranking/NaturalRanking.java | 474 ++
.../math3/stat/ranking/RankingAlgorithm.java | 40 +
.../commons/math3/stat/ranking/TiesStrategy.java | 54 +
.../commons/math3/stat/ranking/package-info.java | 22 +
.../AbstractMultipleLinearRegression.java | 383 ++
.../regression/GLSMultipleLinearRegression.java | 135 +
.../stat/regression/MillerUpdatingRegression.java | 1101 ++++
.../regression/ModelSpecificationException.java | 40 +
.../stat/regression/MultipleLinearRegression.java | 69 +
.../regression/OLSMultipleLinearRegression.java | 285 +
.../math3/stat/regression/RegressionResults.java | 421 ++
.../math3/stat/regression/SimpleRegression.java | 881 +++
.../UpdatingMultipleLinearRegression.java | 93 +
.../math3/stat/regression/package-info.java | 22 +
.../commons/math3/transform/DctNormalization.java | 66 +
.../commons/math3/transform/DftNormalization.java | 56 +
.../commons/math3/transform/DstNormalization.java | 56 +
.../math3/transform/FastCosineTransformer.java | 181 +
.../math3/transform/FastFourierTransformer.java | 674 +++
.../math3/transform/FastHadamardTransformer.java | 323 +
.../math3/transform/FastSineTransformer.java | 180 +
.../commons/math3/transform/RealTransformer.java | 70 +
.../commons/math3/transform/TransformType.java | 30 +
.../commons/math3/transform/TransformUtils.java | 163 +
.../commons/math3/transform/package-info.java | 22 +
.../apache/commons/math3/util/ArithmeticUtils.java | 907 +++
.../org/apache/commons/math3/util/BigReal.java | 325 ++
.../apache/commons/math3/util/BigRealField.java | 83 +
.../math3/util/CentralPivotingStrategy.java | 46 +
.../apache/commons/math3/util/Combinations.java | 406 ++
.../commons/math3/util/CombinatoricsUtils.java | 462 ++
.../apache/commons/math3/util/CompositeFormat.java | 218 +
.../commons/math3/util/ContinuedFraction.java | 181 +
.../org/apache/commons/math3/util/Decimal64.java | 695 +++
.../apache/commons/math3/util/Decimal64Field.java | 61 +
.../commons/math3/util/DefaultTransformer.java | 81 +
.../org/apache/commons/math3/util/DoubleArray.java | 110 +
.../org/apache/commons/math3/util/FastMath.java | 4218 +++++++++++++
.../apache/commons/math3/util/FastMathCalc.java | 658 +++
.../commons/math3/util/FastMathLiteralArrays.java | 6175 ++++++++++++++++++++
.../org/apache/commons/math3/util/Incrementor.java | 179 +
.../apache/commons/math3/util/IterationEvent.java | 55 +
.../commons/math3/util/IterationListener.java | 57 +
.../commons/math3/util/IterationManager.java | 172 +
.../org/apache/commons/math3/util/KthSelector.java | 157 +
.../org/apache/commons/math3/util/MathArrays.java | 1778 ++++++
.../org/apache/commons/math3/util/MathUtils.java | 286 +
.../math3/util/MedianOf3PivotingStrategy.java | 63 +
.../math3/util/MultidimensionalCounter.java | 303 +
.../commons/math3/util/NumberTransformer.java | 38 +
.../commons/math3/util/OpenIntToDoubleHashMap.java | 596 ++
.../commons/math3/util/OpenIntToFieldHashMap.java | 617 ++
.../java/org/apache/commons/math3/util/Pair.java | 155 +
.../math3/util/PivotingStrategyInterface.java | 44 +
.../org/apache/commons/math3/util/Precision.java | 603 ++
.../commons/math3/util/RandomPivotingStrategy.java | 57 +
.../commons/math3/util/ResizableDoubleArray.java | 1206 ++++
.../apache/commons/math3/util/TransformerMap.java | 189 +
.../apache/commons/math3/util/package-info.java | 20 +
.../exception/util/LocalizedFormats_fr.properties | 341 ++
.../apache/commons/math3/random/new-joe-kuo-6.1000 | 1000 ++++
src/media/math.xcf | Bin 0 -> 20374 bytes
src/site/apt/userguide/special.apt | 136 +
src/site/design/differentiation.puml | 105 +
src/site/design/oneD.puml | 81 +
src/site/design/partitioning.puml | 119 +
src/site/design/solver.puml | 102 +
src/site/design/threeD.puml | 86 +
src/site/design/twoD.puml | 84 +
src/site/resources/images/math.gif | Bin 0 -> 15230 bytes
.../images/userguide/cannonball_example.png | Bin 0 -> 47117 bytes
.../images/userguide/cluster_comparison.png | Bin 0 -> 91271 bytes
.../images/userguide/constant_voltage_example.png | Bin 0 -> 82638 bytes
.../images/userguide/low_discrepancy_sequences.png | Bin 0 -> 39484 bytes
.../userguide/real_distribution_examples.png | Bin 0 -> 180657 bytes
src/site/resources/profile.jacoco | 17 +
src/site/resources/style/project.css | 18 +
src/site/site.xml | 85 +
src/site/xdoc/developers.xml | 368 ++
src/site/xdoc/download_math.xml | 168 +
src/site/xdoc/index.xml | 82 +
src/site/xdoc/issue-tracking.xml | 102 +
src/site/xdoc/mail-lists.xml | 202 +
src/site/xdoc/proposal.xml | 131 +
src/site/xdoc/userguide/analysis.xml | 712 +++
src/site/xdoc/userguide/complex.xml | 145 +
src/site/xdoc/userguide/distribution.xml | 117 +
src/site/xdoc/userguide/exceptions.xml | 119 +
src/site/xdoc/userguide/filter.xml | 226 +
src/site/xdoc/userguide/fitting.xml | 144 +
src/site/xdoc/userguide/fraction.xml | 109 +
src/site/xdoc/userguide/genetics.xml | 134 +
src/site/xdoc/userguide/geometry.xml | 238 +
src/site/xdoc/userguide/index.xml | 178 +
src/site/xdoc/userguide/linear.xml | 212 +
src/site/xdoc/userguide/ml.xml | 146 +
src/site/xdoc/userguide/ode.xml | 434 ++
src/site/xdoc/userguide/optimization.xml | 586 ++
src/site/xdoc/userguide/overview.xml | 157 +
src/site/xdoc/userguide/random.xml | 563 ++
src/site/xdoc/userguide/stat.xml | 1247 ++++
src/site/xdoc/userguide/transform.xml | 45 +
src/site/xdoc/userguide/utilities.xml | 246 +
src/site/xdoc/userguide/xdoc.xsl | 68 +
src/test/R/ChiSquareDistributionTestCases.R | 97 +
src/test/R/FDistributionTestCases.R | 92 +
src/test/R/GammaDistributionTestCases.R | 92 +
.../R/KolmogorovSmirnovDistributionTestCases.R | 37 +
src/test/R/KolmogorovSmirnovTestCases.R | 172 +
src/test/R/LevyDistributionTestCases.R | 89 +
src/test/R/README.txt | 168 +
src/test/R/TDistributionTestCases.R | 100 +
src/test/R/TTestCases | 106 +
src/test/R/WeibullDistributionTestCases.R | 92 +
src/test/R/anovaTestCases | 72 +
src/test/R/binomialTestCases | 127 +
src/test/R/cauchyTestCases.R | 97 +
src/test/R/chiSquareTestCases | 101 +
src/test/R/correlationTestCases | 259 +
src/test/R/covarianceTestCases | 146 +
src/test/R/descriptiveTestCases | 83 +
src/test/R/exponentialTestCases | 103 +
src/test/R/geometricTestCases | 121 +
src/test/R/gumbelTestCases.R | 85 +
src/test/R/hypergeometricTestCases | 139 +
src/test/R/laplaceTestCases.R | 85 +
src/test/R/logNormalTestCases | 107 +
src/test/R/logisticsTestCases.R | 85 +
src/test/R/multipleOLSRegressionTestCases | 309 +
src/test/R/nakagamiTestCases.R | 85 +
src/test/R/normalTestCases | 111 +
src/test/R/paretoTestCases | 108 +
src/test/R/pascalTestCases | 135 +
src/test/R/poissonTestCases | 116 +
src/test/R/regressionTestCases | 159 +
src/test/R/testAll | 73 +
src/test/R/testFunctions | 86 +
src/test/R/zipfTestCases | 89 +
.../math3/ExtendedFieldElementAbstractTest.java | 539 ++
.../org/apache/commons/math3/PerfTestUtils.java | 260 +
src/test/java/org/apache/commons/math3/Retry.java | 29 +
.../java/org/apache/commons/math3/RetryRunner.java | 81 +
.../org/apache/commons/math3/RetryRunnerTest.java | 55 +
.../java/org/apache/commons/math3/TestUtils.java | 522 ++
.../commons/math3/analysis/FunctionUtilsTest.java | 349 ++
.../commons/math3/analysis/MonitoredFunction.java | 46 +
.../commons/math3/analysis/QuinticFunction.java | 39 +
.../commons/math3/analysis/SumSincFunction.java | 54 +
.../commons/math3/analysis/XMinus5Function.java | 39 +
.../analysis/differentiation/DSCompilerTest.java | 477 ++
.../differentiation/DerivativeStructureTest.java | 1597 +++++
.../FiniteDifferencesDifferentiatorTest.java | 404 ++
.../differentiation/GradientFunctionTest.java | 88 +
.../differentiation/JacobianFunctionTest.java | 96 +
.../differentiation/SparseGradientTest.java | 1128 ++++
.../math3/analysis/function/GaussianTest.java | 161 +
.../analysis/function/HarmonicOscillatorTest.java | 139 +
.../math3/analysis/function/LogisticTest.java | 200 +
.../commons/math3/analysis/function/LogitTest.java | 225 +
.../math3/analysis/function/SigmoidTest.java | 111 +
.../commons/math3/analysis/function/SincTest.java | 120 +
.../commons/math3/analysis/function/SqrtTest.java | 71 +
.../math3/analysis/function/StepFunctionTest.java | 116 +
.../IterativeLegendreGaussIntegratorTest.java | 170 +
.../integration/LegendreGaussIntegratorTest.java | 151 +
.../integration/MidPointIntegratorTest.java | 150 +
.../integration/RombergIntegratorTest.java | 123 +
.../integration/SimpsonIntegratorTest.java | 121 +
.../integration/TrapezoidIntegratorTest.java | 123 +
.../integration/gauss/BaseRuleFactoryTest.java | 110 +
.../integration/gauss/GaussIntegratorTest.java | 74 +
.../gauss/GaussianQuadratureAbstractTest.java | 116 +
.../integration/gauss/HermiteParametricTest.java | 96 +
.../analysis/integration/gauss/HermiteTest.java | 109 +
.../gauss/LegendreHighPrecisionParametricTest.java | 85 +
.../gauss/LegendreHighPrecisionTest.java | 58 +
.../integration/gauss/LegendreParametricTest.java | 85 +
.../analysis/integration/gauss/LegendreTest.java | 58 +
.../interpolation/AkimaSplineInterpolatorTest.java | 227 +
.../BicubicInterpolatingFunctionTest.java | 383 ++
.../interpolation/BicubicInterpolatorTest.java | 175 +
.../BicubicSplineInterpolatingFunctionTest.java | 668 +++
.../BicubicSplineInterpolatorTest.java | 184 +
.../DividedDifferenceInterpolatorTest.java | 146 +
.../FieldHermiteInterpolatorTest.java | 275 +
.../interpolation/HermiteInterpolatorTest.java | 256 +
.../interpolation/LinearInterpolatorTest.java | 147 +
.../interpolation/LoessInterpolatorTest.java | 260 +
.../interpolation/MicrosphereInterpolatorTest.java | 131 +
.../interpolation/NevilleInterpolatorTest.java | 146 +
...wiseBicubicSplineInterpolatingFunctionTest.java | 268 +
.../PiecewiseBicubicSplineInterpolatorTest.java | 228 +
...ingPolynomialBicubicSplineInterpolatorTest.java | 179 +
.../interpolation/SplineInterpolatorTest.java | 223 +
.../TricubicInterpolatingFunctionTest.java | 631 ++
.../interpolation/TricubicInterpolatorTest.java | 225 +
.../TricubicSplineInterpolatingFunctionTest.java | 544 ++
.../TricubicSplineInterpolatorTest.java | 212 +
.../UnivariatePeriodicInterpolatorTest.java | 163 +
.../PolynomialFunctionLagrangeFormTest.java | 153 +
.../PolynomialFunctionNewtonFormTest.java | 178 +
.../polynomials/PolynomialFunctionTest.java | 264 +
.../polynomials/PolynomialSplineFunctionTest.java | 187 +
.../analysis/polynomials/PolynomialsUtilsTest.java | 388 ++
.../solvers/BaseSecantSolverAbstractTest.java | 257 +
.../analysis/solvers/BisectionSolverTest.java | 90 +
.../solvers/BracketingNthOrderBrentSolverTest.java | 211 +
.../math3/analysis/solvers/BrentSolverTest.java | 267 +
.../math3/analysis/solvers/IllinoisSolverTest.java | 36 +
.../math3/analysis/solvers/LaguerreSolverTest.java | 200 +
.../math3/analysis/solvers/MullerSolver2Test.java | 145 +
.../math3/analysis/solvers/MullerSolverTest.java | 148 +
.../analysis/solvers/NewtonRaphsonSolverTest.java | 90 +
.../math3/analysis/solvers/NewtonSolverTest.java | 110 +
.../math3/analysis/solvers/PegasusSolverTest.java | 36 +
.../analysis/solvers/RegulaFalsiSolverTest.java | 59 +
.../math3/analysis/solvers/RiddersSolverTest.java | 141 +
.../math3/analysis/solvers/SecantSolverTest.java | 39 +
.../solvers/UnivariateSolverUtilsTest.java | 214 +
.../commons/math3/complex/ComplexFieldTest.java | 42 +
.../math3/complex/ComplexFormatAbstractTest.java | 310 +
.../commons/math3/complex/ComplexFormatTest.java | 33 +
.../apache/commons/math3/complex/ComplexTest.java | 1482 +++++
.../commons/math3/complex/ComplexUtilsTest.java | 111 +
.../math3/complex/FrenchComplexFormatTest.java | 34 +
.../commons/math3/complex/QuaternionTest.java | 451 ++
.../commons/math3/complex/RootsOfUnityTest.java | 101 +
.../dfp/BracketingNthOrderBrentSolverDFPTest.java | 170 +
.../org/apache/commons/math3/dfp/Decimal10.java | 99 +
.../org/apache/commons/math3/dfp/DfpDecTest.java | 565 ++
.../org/apache/commons/math3/dfp/DfpMathTest.java | 587 ++
.../java/org/apache/commons/math3/dfp/DfpTest.java | 1653 ++++++
.../AbstractIntegerDistributionTest.java | 127 +
.../distribution/AbstractRealDistributionTest.java | 211 +
.../math3/distribution/BetaDistributionTest.java | 306 +
.../distribution/BinomialDistributionTest.java | 173 +
.../math3/distribution/CauchyDistributionTest.java | 120 +
.../distribution/ChiSquaredDistributionTest.java | 136 +
.../distribution/ConstantRealDistributionTest.java | 91 +
.../EnumeratedIntegerDistributionTest.java | 171 +
.../EnumeratedRealDistributionTest.java | 259 +
.../distribution/ExponentialDistributionTest.java | 134 +
.../math3/distribution/FDistributionTest.java | 158 +
.../math3/distribution/GammaDistributionTest.java | 357 ++
.../distribution/GeometricDistributionTest.java | 170 +
.../math3/distribution/GumbelDistributionTest.java | 71 +
.../HypergeometricDistributionTest.java | 324 +
.../IntegerDistributionAbstractTest.java | 422 ++
.../KolmogorovSmirnovDistributionTest.java | 118 +
.../distribution/LaplaceDistributionTest.java | 72 +
.../math3/distribution/LevyDistributionTest.java | 82 +
.../distribution/LogNormalDistributionTest.java | 253 +
.../distribution/LogisticsDistributionTest.java | 72 +
.../MultivariateNormalDistributionTest.java | 152 +
...ivariateNormalMixtureModelDistributionTest.java | 297 +
.../distribution/NakagamiDistributionTest.java | 72 +
.../math3/distribution/NormalDistributionTest.java | 204 +
.../math3/distribution/ParetoDistributionTest.java | 205 +
.../math3/distribution/PascalDistributionTest.java | 132 +
.../distribution/PoissonDistributionTest.java | 246 +
.../distribution/RealDistributionAbstractTest.java | 548 ++
.../math3/distribution/TDistributionTest.java | 172 +
.../distribution/TriangularDistributionTest.java | 193 +
.../UniformIntegerDistributionTest.java | 113 +
.../distribution/UniformRealDistributionTest.java | 124 +
.../distribution/WeibullDistributionTest.java | 125 +
.../math3/distribution/ZipfDistributionTest.java | 122 +
...teNormalMixtureExpectationMaximizationTest.java | 349 ++
.../exception/DimensionMismatchExceptionTest.java | 33 +
.../exception/MaxCountExceededExceptionTest.java | 32 +
.../NonMonotonicSequenceExceptionTest.java | 46 +
.../math3/exception/NotPositiveExceptionTest.java | 34 +
.../NotStrictlyPositiveExceptionTest.java | 34 +
.../exception/NumberIsTooLargeExceptionTest.java | 34 +
.../exception/NumberIsTooSmallExceptionTest.java | 34 +
.../math3/exception/OutOfRangeExceptionTest.java | 34 +
.../exception/TooManyEvaluationsExceptionTest.java | 39 +
.../commons/math3/exception/util/ArgUtilsTest.java | 75 +
.../math3/exception/util/ExceptionContextTest.java | 130 +
.../math3/exception/util/LocalizedFormatsTest.java | 104 +
.../commons/math3/filter/KalmanFilterTest.java | 443 ++
.../commons/math3/fitting/CurveFitterTest.java | 142 +
.../math3/fitting/GaussianCurveFitterTest.java | 395 ++
.../commons/math3/fitting/GaussianFitterTest.java | 363 ++
.../math3/fitting/HarmonicCurveFitterTest.java | 182 +
.../commons/math3/fitting/HarmonicFitterTest.java | 185 +
.../math3/fitting/PolynomialCurveFitterTest.java | 166 +
.../math3/fitting/PolynomialFitterTest.java | 286 +
.../math3/fitting/SimpleCurveFitterTest.java | 60 +
.../math3/fitting/WeightedObservedPointsTest.java | 125 +
.../AbstractLeastSquaresOptimizerAbstractTest.java | 603 ++
.../math3/fitting/leastsquares/CircleProblem.java | 175 +
.../fitting/leastsquares/CircleVectorial.java | 94 +
.../leastsquares/EvaluationRmsCheckerTest.java | 86 +
.../math3/fitting/leastsquares/EvaluationTest.java | 326 ++
.../leastsquares/EvaluationTestValidation.java | 304 +
.../GaussNewtonOptimizerWithCholeskyTest.java | 133 +
.../GaussNewtonOptimizerWithLUTest.java | 133 +
.../GaussNewtonOptimizerWithQRTest.java | 119 +
.../GaussNewtonOptimizerWithSVDTest.java | 148 +
.../LevenbergMarquardtOptimizerTest.java | 386 ++
.../math3/fitting/leastsquares/MinpackTest.java | 1481 +++++
.../leastsquares/RandomCirclePointGenerator.java | 91 +
.../RandomStraightLinePointGenerator.java | 98 +
.../leastsquares/StatisticalReferenceDataset.java | 370 ++
.../StatisticalReferenceDatasetFactory.java | 201 +
.../fitting/leastsquares/StraightLineProblem.java | 165 +
.../math3/fraction/BigFractionFieldTest.java | 43 +
.../math3/fraction/BigFractionFormatTest.java | 332 ++
.../commons/math3/fraction/BigFractionTest.java | 640 ++
.../commons/math3/fraction/FractionFieldTest.java | 43 +
.../commons/math3/fraction/FractionFormatTest.java | 351 ++
.../commons/math3/fraction/FractionTest.java | 618 ++
.../math3/genetics/BinaryChromosomeTest.java | 65 +
.../commons/math3/genetics/BinaryMutationTest.java | 44 +
.../commons/math3/genetics/ChromosomeTest.java | 111 +
.../commons/math3/genetics/CycleCrossoverTest.java | 149 +
.../math3/genetics/DummyBinaryChromosome.java | 44 +
.../math3/genetics/DummyListChromosome.java | 78 +
.../commons/math3/genetics/DummyRandomKey.java | 44 +
.../genetics/ElitisticListPopulationTest.java | 105 +
.../commons/math3/genetics/FitnessCachingTest.java | 95 +
.../math3/genetics/FixedElapsedTimeTest.java | 74 +
.../math3/genetics/FixedGenerationCountTest.java | 64 +
.../math3/genetics/GeneticAlgorithmTestBinary.java | 123 +
.../genetics/GeneticAlgorithmTestPermutations.java | 132 +
.../commons/math3/genetics/ListPopulationTest.java | 207 +
.../math3/genetics/NPointCrossoverTest.java | 129 +
.../math3/genetics/OnePointCrossoverTest.java | 61 +
.../math3/genetics/OrderedCrossoverTest.java | 102 +
.../math3/genetics/RandomKeyMutationTest.java | 44 +
.../commons/math3/genetics/RandomKeyTest.java | 170 +
.../math3/genetics/TournamentSelectionTest.java | 56 +
.../math3/genetics/UniformCrossoverTest.java | 152 +
.../geometry/enclosing/WelzlEncloser2DTest.java | 177 +
.../geometry/enclosing/WelzlEncloser3DTest.java | 184 +
.../geometry/euclidean/oned/Euclidean1DTest.java | 43 +
.../euclidean/oned/FrenchVector1DFormatTest.java | 34 +
.../geometry/euclidean/oned/IntervalTest.java | 74 +
.../geometry/euclidean/oned/IntervalsSetTest.java | 106 +
.../euclidean/oned/Vector1DFormatAbstractTest.java | 273 +
.../euclidean/oned/Vector1DFormatTest.java | 34 +
.../geometry/euclidean/oned/Vector1DTest.java | 219 +
.../geometry/euclidean/threed/Euclidean3DTest.java | 44 +
.../euclidean/threed/FieldRotationDSTest.java | 845 +++
.../euclidean/threed/FieldRotationDfpTest.java | 716 +++
.../euclidean/threed/FieldVector3DTest.java | 730 +++
.../euclidean/threed/FrenchVector3DFormatTest.java | 34 +
.../math3/geometry/euclidean/threed/LineTest.java | 149 +
.../math3/geometry/euclidean/threed/PLYParser.java | 290 +
.../math3/geometry/euclidean/threed/PlaneTest.java | 171 +
.../euclidean/threed/PolyhedronsSetTest.java | 479 ++
.../euclidean/threed/RotationOrderTest.java | 59 +
.../geometry/euclidean/threed/RotationTest.java | 552 ++
.../euclidean/threed/SphereGeneratorTest.java | 186 +
.../euclidean/threed/SphericalCoordinatesTest.java | 186 +
.../geometry/euclidean/threed/SubLineTest.java | 164 +
.../threed/Vector3DFormatAbstractTest.java | 330 ++
.../euclidean/threed/Vector3DFormatTest.java | 34 +
.../geometry/euclidean/threed/Vector3DTest.java | 412 ++
.../geometry/euclidean/twod/DiskGeneratorTest.java | 118 +
.../geometry/euclidean/twod/Euclidean2DTest.java | 45 +
.../euclidean/twod/FrenchVector2DFormatTest.java | 34 +
.../math3/geometry/euclidean/twod/LineTest.java | 137 +
.../geometry/euclidean/twod/PolygonsSetTest.java | 1318 +++++
.../math3/geometry/euclidean/twod/SegmentTest.java | 45 +
.../math3/geometry/euclidean/twod/SubLineTest.java | 155 +
.../euclidean/twod/Vector2DFormatAbstractTest.java | 314 +
.../euclidean/twod/Vector2DFormatTest.java | 34 +
.../geometry/euclidean/twod/Vector2DTest.java | 40 +
.../twod/hull/AklToussaintHeuristicTest.java | 38 +
.../hull/ConvexHullGenerator2DAbstractTest.java | 444 ++
.../euclidean/twod/hull/MonotoneChainTest.java | 55 +
.../math3/geometry/partitioning/RegionDumper.java | 241 +
.../math3/geometry/partitioning/RegionParser.java | 303 +
.../partitioning/utilities/AVLTreeTest.java | 176 +
.../math3/geometry/spherical/oned/ArcTest.java | 81 +
.../math3/geometry/spherical/oned/ArcsSetTest.java | 580 ++
.../geometry/spherical/oned/LimitAngleTest.java | 38 +
.../math3/geometry/spherical/oned/S1PointTest.java | 75 +
.../math3/geometry/spherical/oned/Sphere1Test.java | 43 +
.../math3/geometry/spherical/twod/CircleTest.java | 186 +
.../math3/geometry/spherical/twod/S2PointTest.java | 88 +
.../spherical/twod/SphericalPolygonsSetTest.java | 536 ++
.../geometry/spherical/twod/SubCircleTest.java | 121 +
.../math3/linear/Array2DRowRealMatrixTest.java | 1172 ++++
.../commons/math3/linear/ArrayFieldVectorTest.java | 1196 ++++
.../commons/math3/linear/ArrayRealVectorTest.java | 172 +
.../math3/linear/BiDiagonalTransformerTest.java | 204 +
.../commons/math3/linear/BlockFieldMatrixTest.java | 1377 +++++
.../commons/math3/linear/BlockRealMatrixTest.java | 1281 ++++
.../math3/linear/CholeskyDecompositionTest.java | 138 +
.../commons/math3/linear/CholeskySolverTest.java | 112 +
.../math3/linear/ConjugateGradientTest.java | 602 ++
.../commons/math3/linear/DiagonalMatrixTest.java | 368 ++
.../math3/linear/EigenDecompositionTest.java | 782 +++
.../commons/math3/linear/EigenSolverTest.java | 200 +
.../math3/linear/FieldLUDecompositionTest.java | 303 +
.../commons/math3/linear/FieldLUSolverTest.java | 177 +
.../commons/math3/linear/FieldMatrixImplTest.java | 1145 ++++
.../math3/linear/FrenchRealVectorFormatTest.java | 34 +
.../math3/linear/HessenbergTransformerTest.java | 221 +
.../apache/commons/math3/linear/HilbertMatrix.java | 75 +
.../commons/math3/linear/InverseHilbertMatrix.java | 101 +
.../commons/math3/linear/LUDecompositionTest.java | 291 +
.../apache/commons/math3/linear/LUSolverTest.java | 169 +
.../MatrixDimensionMismatchExceptionTest.java | 36 +
.../commons/math3/linear/MatrixUtilsTest.java | 484 ++
.../math3/linear/OpenMapRealMatrixTest.java | 49 +
.../commons/math3/linear/QRDecompositionTest.java | 286 +
.../apache/commons/math3/linear/QRSolverTest.java | 196 +
.../math3/linear/RRQRDecompositionTest.java | 233 +
.../commons/math3/linear/RRQRSolverTest.java | 202 +
.../math3/linear/RealMatrixFormatAbstractTest.java | 363 ++
.../commons/math3/linear/RealMatrixFormatTest.java | 34 +
.../math3/linear/RealVectorAbstractTest.java | 1972 +++++++
.../math3/linear/RealVectorFormatAbstractTest.java | 355 ++
.../commons/math3/linear/RealVectorFormatTest.java | 34 +
.../commons/math3/linear/RealVectorTest.java | 233 +
.../RectangularCholeskyDecompositionTest.java | 114 +
.../commons/math3/linear/SchurTransformerTest.java | 202 +
.../linear/SingularValueDecompositionTest.java | 331 ++
.../math3/linear/SingularValueSolverTest.java | 159 +
.../math3/linear/SparseFieldMatrixTest.java | 707 +++
.../math3/linear/SparseFieldVectorTest.java | 781 +++
.../commons/math3/linear/SparseRealMatrixTest.java | 698 +++
.../commons/math3/linear/SparseRealVectorTest.java | 150 +
.../apache/commons/math3/linear/SymmLQTest.java | 688 +++
.../math3/linear/TriDiagonalTransformerTest.java | 178 +
.../linear/UnmodifiableArrayRealVectorTest.java | 39 +
.../linear/UnmodifiableOpenMapRealVectorTest.java | 45 +
.../linear/UnmodifiableRealVectorAbstractTest.java | 455 ++
.../math3/ml/clustering/DBSCANClustererTest.java | 190 +
.../ml/clustering/FuzzyKMeansClustererTest.java | 135 +
.../ml/clustering/KMeansPlusPlusClustererTest.java | 191 +
.../MultiKMeansPlusPlusClustererTest.java | 98 +
.../evaluation/SumOfClusterVariancesTest.java | 80 +
.../math3/ml/distance/CanberraDistanceTest.java | 48 +
.../math3/ml/distance/ChebyshevDistanceTest.java | 42 +
.../math3/ml/distance/EarthMoversDistanceTest.java | 50 +
.../math3/ml/distance/EuclideanDistanceTest.java | 43 +
.../math3/ml/distance/ManhattanDistanceTest.java | 42 +
.../commons/math3/ml/neuralnet/MapUtilsTest.java | 91 +
.../commons/math3/ml/neuralnet/NetworkTest.java | 168 +
.../commons/math3/ml/neuralnet/NeuronTest.java | 112 +
.../ml/neuralnet/OffsetFeatureInitializer.java | 47 +
.../math3/ml/neuralnet/oned/NeuronStringTest.java | 184 +
.../ml/neuralnet/sofm/KohonenTrainingTaskTest.java | 208 +
.../ml/neuralnet/sofm/KohonenUpdateActionTest.java | 92 +
.../sofm/LearningFactorFunctionFactoryTest.java | 94 +
.../sofm/NeighbourhoodSizeFunctionFactoryTest.java | 83 +
.../neuralnet/sofm/TravellingSalesmanSolver.java | 392 ++
.../sofm/util/ExponentialDecayFunctionTest.java | 57 +
.../sofm/util/QuasiSigmoidDecayFunctionTest.java | 54 +
.../ml/neuralnet/twod/NeuronSquareMesh2DTest.java | 684 +++
.../math3/ode/ContinuousOutputModelTest.java | 204 +
.../commons/math3/ode/FirstOrderConverterTest.java | 112 +
.../commons/math3/ode/JacobianMatricesTest.java | 590 ++
.../org/apache/commons/math3/ode/TestProblem1.java | 88 +
.../org/apache/commons/math3/ode/TestProblem2.java | 90 +
.../org/apache/commons/math3/ode/TestProblem3.java | 129 +
.../org/apache/commons/math3/ode/TestProblem4.java | 159 +
.../org/apache/commons/math3/ode/TestProblem5.java | 41 +
.../org/apache/commons/math3/ode/TestProblem6.java | 90 +
.../commons/math3/ode/TestProblemAbstract.java | 188 +
.../commons/math3/ode/TestProblemFactory.java | 50 +
.../commons/math3/ode/TestProblemHandler.java | 153 +
.../commons/math3/ode/events/EventFilterTest.java | 269 +
.../commons/math3/ode/events/EventStateTest.java | 227 +
.../math3/ode/events/OverlappingEventsTest.java | 168 +
.../math3/ode/events/ReappearingEventTest.java | 96 +
.../ode/nonstiff/AdamsBashforthIntegratorTest.java | 158 +
.../ode/nonstiff/AdamsMoultonIntegratorTest.java | 169 +
.../ClassicalRungeKuttaIntegratorTest.java | 337 ++
.../ClassicalRungeKuttaStepInterpolatorTest.java | 98 +
.../nonstiff/DormandPrince54IntegratorTest.java | 354 ++
.../DormandPrince54StepInterpolatorTest.java | 153 +
.../nonstiff/DormandPrince853IntegratorTest.java | 480 ++
.../DormandPrince853StepInterpolatorTest.java | 153 +
.../math3/ode/nonstiff/EulerIntegratorTest.java | 189 +
.../ode/nonstiff/EulerStepInterpolatorTest.java | 194 +
.../math3/ode/nonstiff/GillIntegratorTest.java | 244 +
.../ode/nonstiff/GillStepInterpolatorTest.java | 98 +
.../nonstiff/GraggBulirschStoerIntegratorTest.java | 426 ++
.../GraggBulirschStoerStepInterpolatorTest.java | 155 +
.../ode/nonstiff/HighamHall54IntegratorTest.java | 367 ++
.../nonstiff/HighamHall54StepInterpolatorTest.java | 153 +
.../math3/ode/nonstiff/LutherIntegratorTest.java | 329 ++
.../ode/nonstiff/LutherStepInterpolatorTest.java | 98 +
.../math3/ode/nonstiff/MidpointIntegratorTest.java | 189 +
.../ode/nonstiff/MidpointStepInterpolatorTest.java | 99 +
.../commons/math3/ode/nonstiff/StepProblem.java | 65 +
.../ode/nonstiff/ThreeEighthesIntegratorTest.java | 238 +
.../ThreeEighthesStepInterpolatorTest.java | 98 +
.../math3/ode/sampling/DummyStepInterpolator.java | 153 +
.../ode/sampling/DummyStepInterpolatorTest.java | 136 +
.../sampling/NordsieckStepInterpolatorTest.java | 96 +
.../ode/sampling/StepInterpolatorTestUtils.java | 89 +
.../sampling/StepNormalizerOutputOverlapTest.java | 69 +
.../ode/sampling/StepNormalizerOutputTest.java | 69 +
.../ode/sampling/StepNormalizerOutputTestBase.java | 282 +
.../math3/ode/sampling/StepNormalizerTest.java | 126 +
.../commons/math3/optim/PointValuePairTest.java | 35 +
.../math3/optim/PointVectorValuePairTest.java | 39 +
.../math3/optim/SimplePointCheckerTest.java | 53 +
.../math3/optim/SimpleValueCheckerTest.java | 52 +
.../math3/optim/SimpleVectorValueCheckerTest.java | 53 +
.../math3/optim/linear/SimplexSolverTest.java | 849 +++
.../math3/optim/linear/SimplexTableauTest.java | 108 +
.../MultiStartMultivariateOptimizerTest.java | 135 +
.../MultivariateFunctionMappingAdapterTest.java | 192 +
.../MultivariateFunctionPenaltyAdapterTest.java | 202 +
.../nonlinear/scalar/gradient/CircleScalar.java | 85 +
.../NonLinearConjugateGradientOptimizerTest.java | 477 ++
.../scalar/noderiv/BOBYQAOptimizerTest.java | 632 ++
.../scalar/noderiv/CMAESOptimizerTest.java | 794 +++
.../scalar/noderiv/PowellOptimizerTest.java | 268 +
.../SimplexOptimizerMultiDirectionalTest.java | 256 +
.../noderiv/SimplexOptimizerNelderMeadTest.java | 323 +
.../MultiStartMultivariateVectorOptimizerTest.java | 247 +
.../AbstractLeastSquaresOptimizerAbstractTest.java | 640 ++
.../AbstractLeastSquaresOptimizerTest.java | 128 +
...bstractLeastSquaresOptimizerTestValidation.java | 334 ++
.../nonlinear/vector/jacobian/CircleProblem.java | 179 +
.../nonlinear/vector/jacobian/CircleVectorial.java | 99 +
.../vector/jacobian/GaussNewtonOptimizerTest.java | 171 +
.../jacobian/LevenbergMarquardtOptimizerTest.java | 373 ++
.../nonlinear/vector/jacobian/MinpackTest.java | 1466 +++++
.../jacobian/RandomCirclePointGenerator.java | 92 +
.../jacobian/RandomStraightLinePointGenerator.java | 100 +
.../jacobian/StatisticalReferenceDataset.java | 385 ++
.../StatisticalReferenceDatasetFactory.java | 203 +
.../vector/jacobian/StraightLineProblem.java | 169 +
.../math3/optim/univariate/BracketFinderTest.java | 117 +
.../math3/optim/univariate/BrentOptimizerTest.java | 301 +
.../MultiStartUnivariateOptimizerTest.java | 133 +
.../SimpleUnivariateValueCheckerTest.java | 52 +
...riateDifferentiableMultiStartOptimizerTest.java | 94 +
...ifferentiableVectorMultiStartOptimizerTest.java | 241 +
.../MultivariateMultiStartOptimizerTest.java | 75 +
.../math3/optimization/PointValuePairTest.java | 39 +
.../optimization/PointVectorValuePairTest.java | 43 +
.../math3/optimization/SimplePointCheckerTest.java | 55 +
.../math3/optimization/SimpleValueCheckerTest.java | 53 +
.../optimization/SimpleVectorValueCheckerTest.java | 55 +
.../optimization/direct/BOBYQAOptimizerTest.java | 630 ++
.../optimization/direct/CMAESOptimizerTest.java | 760 +++
.../MultivariateFunctionMappingAdapterTest.java | 191 +
.../MultivariateFunctionPenaltyAdapterTest.java | 193 +
.../optimization/direct/PowellOptimizerTest.java | 238 +
.../SimplexOptimizerMultiDirectionalTest.java | 205 +
.../direct/SimplexOptimizerNelderMeadTest.java | 266 +
.../optimization/fitting/CurveFitterTest.java | 153 +
.../optimization/fitting/GaussianFitterTest.java | 364 ++
.../optimization/fitting/HarmonicFitterTest.java | 201 +
.../optimization/fitting/PolynomialFitterTest.java | 286 +
.../AbstractLeastSquaresOptimizerAbstractTest.java | 523 ++
.../general/AbstractLeastSquaresOptimizerTest.java | 99 +
...bstractLeastSquaresOptimizerTestValidation.java | 321 +
.../math3/optimization/general/CircleProblem.java | 139 +
.../math3/optimization/general/CircleScalar.java | 89 +
.../optimization/general/CircleVectorial.java | 91 +
.../general/GaussNewtonOptimizerTest.java | 152 +
.../general/LevenbergMarquardtOptimizerTest.java | 386 ++
.../math3/optimization/general/MinpackTest.java | 1211 ++++
.../NonLinearConjugateGradientOptimizerTest.java | 385 ++
.../general/RandomCirclePointGenerator.java | 93 +
.../general/RandomStraightLinePointGenerator.java | 100 +
.../general/StatisticalReferenceDataset.java | 367 ++
.../StatisticalReferenceDatasetFactory.java | 150 +
.../optimization/general/StraightLineProblem.java | 159 +
.../optimization/linear/SimplexSolverTest.java | 640 ++
.../optimization/linear/SimplexTableauTest.java | 112 +
.../optimization/univariate/BracketFinderTest.java | 118 +
.../univariate/BrentOptimizerTest.java | 252 +
.../SimpleUnivariateValueCheckerTest.java | 53 +
.../UnivariateMultiStartOptimizerTest.java | 107 +
.../apache/commons/math3/primes/PrimesTest.java | 172 +
.../math3/random/AbstractRandomGeneratorTest.java | 37 +
.../math3/random/BitsStreamGeneratorTest.java | 83 +
.../CorrelatedRandomVectorGeneratorTest.java | 198 +
.../math3/random/EmpiricalDistributionTest.java | 566 ++
.../math3/random/GaussianRandomGeneratorTest.java | 40 +
.../math3/random/HaltonSequenceGeneratorTest.java | 135 +
.../org/apache/commons/math3/random/ISAACTest.java | 393 ++
.../commons/math3/random/MersenneTwisterTest.java | 304 +
.../commons/math3/random/RandomAdaptorTest.java | 113 +
.../math3/random/RandomDataGeneratorTest.java | 1249 ++++
.../math3/random/RandomGeneratorAbstractTest.java | 431 ++
.../math3/random/RandomGeneratorFactoryTest.java | 33 +
.../math3/random/SobolSequenceGeneratorTest.java | 107 +
.../math3/random/StableRandomGeneratorTest.java | 131 +
.../random/SynchronizedRandomGeneratorTest.java | 117 +
.../commons/math3/random/TestRandomGenerator.java | 41 +
.../UncorrelatedRandomVectorGeneratorTest.java | 66 +
.../math3/random/UniformRandomGeneratorTest.java | 40 +
.../UnitSphereRandomVectorGeneratorTest.java | 68 +
.../commons/math3/random/ValueServerTest.java | 240 +
.../apache/commons/math3/random/Well1024aTest.java | 79 +
.../commons/math3/random/Well19937aTest.java | 115 +
.../commons/math3/random/Well19937cTest.java | 115 +
.../commons/math3/random/Well44497aTest.java | 115 +
.../commons/math3/random/Well44497bTest.java | 115 +
.../apache/commons/math3/random/Well512aTest.java | 75 +
.../apache/commons/math3/special/BesselJTest.java | 776 +++
.../org/apache/commons/math3/special/BetaTest.java | 978 ++++
.../org/apache/commons/math3/special/ErfTest.java | 261 +
.../apache/commons/math3/special/GammaTest.java | 968 +++
.../commons/math3/stat/CertifiedDataTest.java | 150 +
.../apache/commons/math3/stat/FrequencyTest.java | 463 ++
.../apache/commons/math3/stat/StatUtilsTest.java | 555 ++
.../math3/stat/clustering/DBSCANClustererTest.java | 191 +
.../stat/clustering/EuclideanDoublePointTest.java | 63 +
.../stat/clustering/EuclideanIntegerPointTest.java | 65 +
.../clustering/KMeansPlusPlusClustererTest.java | 273 +
.../math3/stat/correlation/CovarianceTest.java | 252 +
.../stat/correlation/KendallsCorrelationTest.java | 261 +
.../stat/correlation/PearsonsCorrelationTest.java | 317 +
.../correlation/SpearmansRankCorrelationTest.java | 160 +
.../stat/correlation/StorelessCovarianceTest.java | 263 +
.../math3/stat/data/CertifiedDataAbstractTest.java | 159 +
.../apache/commons/math3/stat/data/LewTest.java | 28 +
.../commons/math3/stat/data/LotteryTest.java | 28 +
.../AbstractUnivariateStatisticTest.java | 102 +
.../AggregateSummaryStatisticsTest.java | 300 +
.../descriptive/DescriptiveStatisticsTest.java | 387 ++
.../math3/stat/descriptive/ListUnivariateImpl.java | 205 +
.../stat/descriptive/ListUnivariateImplTest.java | 158 +
.../descriptive/MixedListUnivariateImplTest.java | 205 +
.../MultivariateSummaryStatisticsTest.java | 314 +
.../descriptive/StatisticalSummaryValuesTest.java | 83 +
.../StorelessUnivariateStatisticAbstractTest.java | 219 +
.../stat/descriptive/SummaryStatisticsTest.java | 372 ++
.../SynchronizedDescriptiveStatisticsTest.java | 27 +
...chronizedMultivariateSummaryStatisticsTest.java | 27 +
.../SynchronizedSummaryStatisticsTest.java | 26 +
.../UnivariateStatisticAbstractTest.java | 225 +
.../stat/descriptive/moment/FirstMomentTest.java | 111 +
.../stat/descriptive/moment/FourthMomentTest.java | 46 +
.../stat/descriptive/moment/GeometricMeanTest.java | 78 +
.../stat/descriptive/moment/InteractionTest.java | 79 +
.../stat/descriptive/moment/KurtosisTest.java | 65 +
.../math3/stat/descriptive/moment/MeanTest.java | 67 +
.../stat/descriptive/moment/SecondMomentTest.java | 46 +
.../stat/descriptive/moment/SemiVarianceTest.java | 153 +
.../stat/descriptive/moment/SkewnessTest.java | 64 +
.../descriptive/moment/StandardDeviationTest.java | 95 +
.../stat/descriptive/moment/ThirdMomentTest.java | 46 +
.../stat/descriptive/moment/VarianceTest.java | 117 +
.../moment/VectorialCovarianceTest.java | 92 +
.../stat/descriptive/moment/VectorialMeanTest.java | 87 +
.../math3/stat/descriptive/rank/MaxTest.java | 74 +
.../math3/stat/descriptive/rank/MedianTest.java | 121 +
.../math3/stat/descriptive/rank/MinTest.java | 74 +
.../descriptive/rank/PSquarePercentileTest.java | 760 +++
.../stat/descriptive/rank/PercentileTest.java | 877 +++
.../stat/descriptive/summary/ProductTest.java | 90 +
.../math3/stat/descriptive/summary/SumLogTest.java | 85 +
.../math3/stat/descriptive/summary/SumSqTest.java | 71 +
.../math3/stat/descriptive/summary/SumTest.java | 80 +
.../math3/stat/inference/BinomialTestTest.java | 81 +
.../math3/stat/inference/ChiSquareTestTest.java | 260 +
.../commons/math3/stat/inference/GTestTest.java | 291 +
.../stat/inference/KolmogorovSmirnovTestTest.java | 339 ++
.../math3/stat/inference/MannWhitneyUTestTest.java | 127 +
.../math3/stat/inference/OneWayAnovaTest.java | 154 +
.../commons/math3/stat/inference/TTestTest.java | 297 +
.../math3/stat/inference/TestUtilsTest.java | 557 ++
.../stat/inference/WilcoxonSignedRankTestTest.java | 183 +
.../stat/interval/AgrestiCoullIntervalTest.java | 43 +
.../BinomialConfidenceIntervalAbstractTest.java | 82 +
.../stat/interval/ClopperPearsonIntervalTest.java | 43 +
.../math3/stat/interval/IntervalUtilsTest.java | 64 +
.../interval/NormalApproximationIntervalTest.java | 43 +
.../stat/interval/WilsonScoreIntervalTest.java | 43 +
.../math3/stat/ranking/NaturalRankingTest.java | 226 +
.../GLSMultipleLinearRegressionTest.java | 297 +
.../regression/MillerUpdatingRegressionTest.java | 1082 ++++
.../MultipleLinearRegressionAbstractTest.java | 135 +
.../OLSMultipleLinearRegressionTest.java | 820 +++
.../stat/regression/SimpleRegressionTest.java | 697 +++
.../math3/transform/FastCosineTransformerTest.java | 277 +
.../transform/FastFourierTransformerTest.java | 562 ++
.../transform/FastHadamardTransformerTest.java | 126 +
.../math3/transform/FastSineTransformerTest.java | 300 +
.../transform/RealTransformerAbstractTest.java | 344 ++
.../commons/math3/util/ArithmeticUtilsTest.java | 598 ++
.../commons/math3/util/BigRealFieldTest.java | 43 +
.../org/apache/commons/math3/util/BigRealTest.java | 189 +
.../commons/math3/util/CombinationsTest.java | 197 +
.../commons/math3/util/CombinatoricsUtilsTest.java | 376 ++
.../commons/math3/util/ContinuedFractionTest.java | 45 +
.../apache/commons/math3/util/Decimal64Test.java | 427 ++
.../commons/math3/util/DefaultTransformerTest.java | 105 +
.../math3/util/DoubleArrayAbstractTest.java | 132 +
.../math3/util/FastMathStrictComparisonTest.java | 261 +
.../apache/commons/math3/util/FastMathTest.java | 1606 +++++
.../apache/commons/math3/util/IncrementorTest.java | 137 +
.../apache/commons/math3/util/MathArraysTest.java | 1151 ++++
.../apache/commons/math3/util/MathUtilsTest.java | 353 ++
.../math3/util/MultidimensionalCounterTest.java | 217 +
.../math3/util/OpenIntToDoubleHashMapTest.java | 325 ++
.../commons/math3/util/OpenIntToFieldTest.java | 335 ++
.../org/apache/commons/math3/util/PairTest.java | 118 +
.../apache/commons/math3/util/PrecisionTest.java | 551 ++
.../math3/util/ResizableDoubleArrayTest.java | 598 ++
.../org/apache/commons/math3/util/TestBean.java | 71 +
.../commons/math3/util/TransformerMapTest.java | 122 +
.../special/RealFunctionValidation/MANIFEST.txt | 1 +
.../special/RealFunctionValidation/README.txt | 139 +
.../RealFunctionValidation.java | 361 ++
.../RealFunctionValidation.sh | 24 +
src/test/maxima/special/reference/gamma.mac | 59 +
src/test/maxima/special/reference/gamma.properties | 23 +
src/test/maxima/special/reference/logBeta.mac | 60 +
.../maxima/special/reference/logBeta.properties | 23 +
src/test/maxima/special/reference/logGamma.mac | 49 +
.../maxima/special/reference/logGamma.properties | 23 +
.../distribution/gamma-distribution-shape-1.csv | 3215 ++++++++++
.../distribution/gamma-distribution-shape-10.csv | 415 ++
.../distribution/gamma-distribution-shape-100.csv | 408 ++
.../distribution/gamma-distribution-shape-1000.csv | 3325 +++++++++++
.../distribution/gamma-distribution-shape-142.csv | 775 +++
.../distribution/gamma-distribution-shape-8.csv | 3215 ++++++++++
.../math3/distribution/gamma-distribution.mac | 73 +
.../commons/math3/fitting/leastsquares/Hahn1.dat | 296 +
.../commons/math3/fitting/leastsquares/Kirby2.dat | 211 +
.../math3/fitting/leastsquares/Lanczos1.dat | 84 +
.../commons/math3/fitting/leastsquares/MGH17.dat | 93 +
.../math3/geometry/euclidean/threed/issue-1211.bsp | 15 +
.../threed/pentomino-N-bad-orientation.ply | 40 +
.../geometry/euclidean/threed/pentomino-N-hole.ply | 39 +
.../euclidean/threed/pentomino-N-out-of-plane.ply | 40 +
.../euclidean/threed/pentomino-N-too-close.ply | 86 +
.../geometry/euclidean/threed/pentomino-N.ply | 39 +
.../org/apache/commons/math3/linear/matrix1.csv | 216 +
.../org/apache/commons/math3/linear/matrix2.csv | 22 +
.../optim/nonlinear/vector/jacobian/Hahn1.dat | 296 +
.../optim/nonlinear/vector/jacobian/Kirby2.dat | 211 +
.../optim/nonlinear/vector/jacobian/Lanczos1.dat | 84 +
.../optim/nonlinear/vector/jacobian/MGH17.dat | 93 +
.../commons/math3/optimization/general/Hahn1.dat | 296 +
.../commons/math3/optimization/general/Kirby2.dat | 211 +
.../math3/optimization/general/Lanczos1.dat | 84 +
.../commons/math3/optimization/general/MGH17.dat | 93 +
.../org/apache/commons/math3/random/emptyFile.txt | 0
.../org/apache/commons/math3/random/testData.txt | 1000 ++++
.../org/apache/commons/math3/stat/data/Lew.txt | 252 +
.../org/apache/commons/math3/stat/data/Lottery.txt | 261 +
.../org/apache/commons/math3/stat/data/Mavro.txt | 110 +
.../apache/commons/math3/stat/data/Michelso.txt | 160 +
.../org/apache/commons/math3/stat/data/NumAcc1.txt | 63 +
.../org/apache/commons/math3/stat/data/NumAcc2.txt | 1061 ++++
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