[jalview] 01/01: Introduced EDAM annotation for Jalview

[Steffen Möller]

This is an automated email from the git hooks/post-receive script.

moeller pushed a commit to branch master
in repository jalview.

commit 446e236f3fc8eead617028bf67696c7696bdc93e
Author: Steffen Moeller <moeller at debian.org>
Date:   Fri Feb 5 13:52:14 2016 +0100

    Introduced EDAM annotation for Jalview
---
 debian/changelog     |  9 +++++++++
 debian/control       |  4 ++--
 debian/upstream/edam | 45 +++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 56 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 33fca3d..4181047 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+jalview (2.7.dfsg-5) UNRELEASED; urgency=low
+
+  [ Steffen Moeller and Hervé Ménager ]
+  * Updated Standards-Version to 3.6
+  * Introduced EDAM annotation to
+    debian/upstream/edam
+
+ -- Steffen Moeller <moeller at debian.org>  Fri, 05 Feb 2016 13:47:26 +0100
+
 jalview (2.7.dfsg-4) unstable; urgency=low
 
   * Team upload
diff --git a/debian/control b/debian/control
index dfd2d21..8e70e37 100644
--- a/debian/control
+++ b/debian/control
@@ -27,8 +27,8 @@ Build-Depends: ant,
                libmiglayout-java,
                libvamsas-client-java,
                libwsdl4j-java
-Standards-Version: 3.9.5
-Vcs-Git: git://anonscm.debian.org/pkg-java/jalview.git
+Standards-Version: 3.9.6
+Vcs-Git: git://anonscm.debian.org/git/pkg-java/jalview.git
 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-java/jalview.git
 Homepage: http://www.jalview.org
 
diff --git a/debian/upstream/edam b/debian/upstream/edam
new file mode 100644
index 0000000..7ed76dd
--- /dev/null
+++ b/debian/upstream/edam
@@ -0,0 +1,45 @@
+ontology: EDAM (1.22)
+topic: 
+  - Sequence analysis
+  - Structure analysis
+scopes: 
+  - name: summary
+    function: 
+     - Multiple Sequence Alignment
+     - Sequence Alignment visualisation
+     - Phylogenetic tree visualisation
+     - Sequence annotation
+     - Sequence clustering
+     - Protein secondary structure prediction
+     - RNA secondary structure prediction
+    inputs: 
+     - data: Sequence alignment
+       formats:
+       - FASTA-aln
+       - FASTA
+       - Stockholm
+       - Clustalw format
+       - MSF
+       - Pileup
+       - nbrf/pir
+       #-pfam missing format, needs adding in EDAM
+       - BLC
+       #-jalview
+    outputs:
+     - data: Alignment
+       formats: 
+       - FASTA-aln
+       - FASTA-aln
+       - FASTA
+       - Stockholm
+       - Clustalw format
+       - MSF
+       - Pileup
+       - nbrf/pir
+       #-pfam missing format, needs adding in EDAM
+       - BLC
+       #-jalview
+       - png
+       #-imgmap HTML image map format, not in EDAM
+       - EPS
+       - svg

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-java/jalview.git