[cdk] 01/62: Added the debian/ for CDK.sf.net. Building on Daniel Leiderts deb packages, and now using CDBS. Its not fully working yet, but putting it here allows collaborate work
Emmanuel Bourg
ebourg-guest at moszumanska.debian.org
Fri Mar 30 21:56:34 BST 2018
This is an automated email from the git hooks/post-receive script.
ebourg-guest pushed a commit to branch master
in repository cdk.
commit ac1ebfcbfe42978f658e08fae6c9185e2941b26a
Author: Egon Willighagen <egonw at users.sf.net>
Date: Wed Feb 15 09:41:03 2006 +0000
Added the debian/ for CDK.sf.net. Building on Daniel Leiderts deb packages, and now using CDBS. Its not fully working yet, but putting it here allows collaborate work
---
debian/README.Debian | 6 ++
debian/TODO | 8 ++
debian/cdk.copyright | 31 +++++++
debian/cdk.dirs | 2 +
debian/cdk.install | 3 +
debian/cdk.manpages | 10 +++
debian/changelog | 188 +++++++++++++++++++++++++++++++++++++++
debian/compat | 1 +
debian/control | 46 ++++++++++
debian/libcdk-java-doc.copyright | 39 ++++++++
debian/libcdk-java-doc.dirs | 2 +
debian/libcdk-java-doc.install | 3 +
debian/libcdk-java.copyright | 39 ++++++++
debian/libcdk-java.dirs | 2 +
debian/libcdk-java.install | 3 +
debian/rules | 63 +++++++++++++
16 files changed, 446 insertions(+)
diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..8ddaa73
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,6 @@
+cdk for Debian
+--------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- Daniel Leidert <daniel.leidert at wgdd.de>, Sat, 5 Feb 2005 19:42:32 +0100
diff --git a/debian/TODO b/debian/TODO
new file mode 100644
index 0000000..6866ad4
--- /dev/null
+++ b/debian/TODO
@@ -0,0 +1,8 @@
+TODO list for cdk in Debian
+
+* Patch the build.xml so that the JavaDoc taglets Make*FilesTaglet in doc/javadoc/source compile with gjdoc
+
+* Make a binary package for JChemPaint, see the build-jchempaint.xml
+
+* Complete dependencies and remove optional library dependencies from contrib, such as batik
+
diff --git a/debian/cdk.copyright b/debian/cdk.copyright
new file mode 100644
index 0000000..25b4e8b
--- /dev/null
+++ b/debian/cdk.copyright
@@ -0,0 +1,31 @@
+This package was debianized by Daniel Leidert (dale) <daniel.leidert at wgdd.de>.
+
+It was downloaded from http://cdk.sourceforge.net.
+
+Copyright:
+
+ Copyrighted 1997-2006 by The CDK Development Team
+
+Upstream Authors:
+
+ Egon Willighagen, Daniel Leidert
+ The CDK Development Team
+
+License: LGPL
+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+On Debian systems, a copy of the GNU Lesser General Public License, version
+2.1, is available as the file /usr/share/common-licenses/copyright/LGPL.
diff --git a/debian/cdk.dirs b/debian/cdk.dirs
new file mode 100644
index 0000000..26ca4c0
--- /dev/null
+++ b/debian/cdk.dirs
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/bug/cdk
diff --git a/debian/cdk.install b/debian/cdk.install
new file mode 100644
index 0000000..417999e
--- /dev/null
+++ b/debian/cdk.install
@@ -0,0 +1,3 @@
+cdk-bin/* usr/bin
+
+debian/reportbug/control usr/share/bug/cdk
diff --git a/debian/cdk.manpages b/debian/cdk.manpages
new file mode 100644
index 0000000..503eabc
--- /dev/null
+++ b/debian/cdk.manpages
@@ -0,0 +1,10 @@
+cdk-man/cdk-dbadmin.1
+cdk-man/cdk-download.1
+cdk-man/cdk-fileconvert.1
+cdk-man/cdk-fingerprinter.1
+cdk-man/cdk-guessformat.1
+cdk-man/cdk-iupacname.1
+cdk-man/cdk-substructure.1
+cdk-man/cdk-test.1
+cdk-man/cdk-validate.1
+cdk-man/cdk-view.1
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..d09c8a5
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,188 @@
+cdk (20060211-1) unstable; urgency=low
+
+ * New upstream release
+ * Removed JOELib from package
+
+ -- Egon Willighagen <egonw at users.sourceforge.net> Sat, 11 Feb 2006 20:47:00 +0100
+
+cdk (20050125-0dl0) unstable; urgency=low
+
+ * Completely rewritten package process.
+ - includes joelib source
+ - packaging joelib with (API-)documentation
+ - massive using of dpatch
+ - excluding common stuff (copy it into /usr/share/java, if you need it),
+ means: removed libcdk-java-common
+ * Fixes:
+ - rewritten manpages for cdk binaries
+ - better JAVA detection for cdk binaries
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Sat, 5 Feb 2005 19:44:26 +0100
+
+cdk (20041015-1) unstable; urgency=low
+
+ * New upstream release + fix for wrong element types.
+ * Moved cdk to contrib/utils.
+ * Moved libcdk-java to contrib/libs.
+ * Moved libcdk-java-doc to contrib/doc.
+ * Moved libcdk-java-common to non-free/libs.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Sat, 13 Nov 2004 03:04:22 +0100
+
+cdk (20040917-2) unstable; urgency=low
+
+ * New build.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Sun, 10 Oct 2004 20:01:48 +0200
+
+cdk (20040917-1) unstable; urgency=low
+
+ * New Upstream release.
+ * Build against joelib-20040827.
+ * Package was reamed to cdk (use 'apt-get source cdk' to get the source), but
+ it is still split into 4 packages.
+ * Adjusted control-file and dependencies.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Fri, 17 Sep 2004 23:26:46 +0200
+
+libcdk-java (20040626-2+3) unstable; urgency=low
+
+ * [NEWS] package-split.
+ * Added package cdk, which contains the shell wrappers (+ manpages).
+ * Added control-files for reportbug.
+ * Clean-up Makefile and rules, some changes in debian.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Fri, 20 Aug 2004 23:13:38 +0200
+
+libcdk-java (20040626-2+2) unstable; urgency=low
+
+ * Added a JavaDoc-package for the CDK-API (libcdk-java-doc).
+ * Adjusted debian/control.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Fri, 20 Aug 2004 12:22:51 +0200
+
+libcdk-java (20040626-2+1) unstable; urgency=low
+
+ * Build with Java3D and JOElib.
+ * Now suggests the different plugin-packages, not libcdk-java-plugins.
+ * Symlinks are now made "the Debian way".
+ * Split package - recommends libcdk-java-common.
+ * libcdk-java-common pre-depends on libcdk-java, to solve the upgrade
+ problem with the common-libs in /usr/share/libcdk-java/lib.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Fri, 13 Aug 2004 03:19:59 +0200
+
+libcdk-java (20040626-1.1) unstable; urgency=low
+
+ * Now suggests libcdk-java-plugins.
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Sun, 10 Aug 2004 22:41:15 +0200
+
+libcdk-java (20040626-1) unstable; urgency=low
+
+ * New upstream release.
+ * Now there is only one package called libcdk-java providing all libraries
+ and shell scripts, former provided by cdk & libcdk-java.
+ * libcdk-java is now built against ...(libraries)
+
+ -- Daniel Leidert (dale) <daniel.leidert at wgdd.de> Sun, 8 Aug 2004 22:42:33 +0200
+
+cdk (20040513) unstable; urgency=low
+
+ * New upstream release
+ * Now uses gjdoc instead of javadoc (see patches/)
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Thu, 13 May 2004 19:44:00 +0100
+
+cdk (20040420cvs-2) unstable; urgency=low
+
+ * Now conform Standards Version 3.6.1 (control)
+ * Split up package into two binary packages: libcdk-java and cdk
+ * Now depends on debhelper (rules)
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Tue, 20 Apr 2004 13:27:00 +0100
+
+cdk (20040420cvs-1) unstable; urgency=low
+
+ * New release based on CVS
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Tue, 20 Apr 2004 11:36:00 +0100
+
+cdk (20040202-1) unstable; urgency=low
+
+ * New upstream release
+ * Now depends on a lot more Debian packages (control)
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Tue, 03 Feb 2004 11:47:00 +0100
+
+cdk (20040120-2) unstable; urgency=low
+
+ * Now build depends on gcj instead of j2sdk1.4
+ * Now depends on kaffe instead of j2se1.4
+ * Added missing xsltproc build dependency (control)
+ * Now stores extra jar libraries in the correct dir (/usr/share/cdk/lib)
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Wed, 21 Jan 2004 15:33:00 +0100
+
+cdk (20040120-1) unstable; urgency=low
+
+ * New upstream release 20040120
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Tue, 20 Jan 2004 10:30:00 +0100
+
+cdk (20040112-2) unstable; urgency=low
+
+ * Fixed description title name of CDK (control)
+ * Hopefully moved package to arch = all (control)
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Mon, 12 Jan 2004 17:59:00 +0100
+
+cdk (20040112-1) unstable; urgency=low
+
+ * New upstream release taken from CVS
+ * Fixed Depends to have java2-runtime (control)
+ * Added list of contributors to AUTHORS
+ * More information in README
+ * Removed CVS dir from debian/patches
+ * Added upstream ChangeLog
+ * Moved package to science subsection (control)
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Mon, 12 Jan 2004 12:46:00 +0100
+
+cdk (20031017-1) unstable; urgency=low
+
+ * New upstream release
+ * Now uses log4j*.jar from liblog4j1.2-java package
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Fri, 17 Oct 2003 11:11:00 +0100
+
+cdk (20030702-1) unstable; urgency=low
+
+ * New upstream release
+ * Put into correct Section (control)
+ * Now conform Standards Version 3.5.9 (control)
+ * Removed duplication in Description (control)
+ * Added depends on j2se1.4 (control)
+ * Fixed building system
+ * Now uses junit.jar from junit package
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Sat, 03 Jul 2003 12:11:00 +0100
+
+cdk (20020920-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Sat, 20 Sep 2002 21:58:43 +0100
+
+cdk (20020831-1) unstable; urgency=low
+
+ * New upstream version
+ * Merged libcdk, libcdkextra and cdk into one package
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Sun, 01 Sep 2002 20:34:11 +0100
+
+cdk (20020805-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- E.L. Willighagen (Egon) <egonw at sci.kun.nl> Thu, 06 Aug 2002 19:59:29 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..b8626c4
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+4
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..3ac28ef
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,46 @@
+Source: cdk
+Section: contrib/libs
+Priority: optional
+Maintainer: Daniel Leidert (dale) <daniel.leidert at wgdd.de>
+Build-Depends-Indep: debhelper (>= 4.0.0), ant (>= 1.6), antlr, docbook-xsl (>= 1.66.1), javacc, kaffe | java2-compiler, libcommons-cli-java, libcrimson-java, libjdom0-java, liblog4j1.2-java, libmysql-java, libpgjava, libxerces2-java, xsltproc
+Standards-Version: 3.6.1.1
+
+Package: cdk
+Section: contrib/utils
+Architecture: all
+Depends: libcdk-java (>= ${Source-Version}), perl, perl-base (>= 5.6.1)
+Description: Shell wrappers for the Chemistry Development Kit (CDK)
+ The CDK is a library of Java classes used in computational and
+ information chemistry and in bioinformatics. It includes renderers,
+ file IO, SMILES generation/parsing, maximal common substructure
+ algorithms, fingerprinting and much, much more.
+ .
+ This package contains a set of shell wrappers to manipulate databases,
+ query structure informations, test the CDK-classes and many more.
+
+Package: libcdk-java
+Section: contrib/libs
+Architecture: all
+Depends: j2re1.4 | java2-virtual-machine | java2-runtime
+Suggests: jchempaint, jmol, cdk, libcdk-java-doc
+Description: Chemistry Development Kit (CDK) Java libraries
+ The CDK is a library of Java classes used in computational and
+ information chemistry and in bioinformatics. It includes renderers,
+ file IO, SMILES generation/parsing, maximal common substructure
+ algorithms, fingerprinting and much, much more.
+ .
+ See the project page for more information:
+ http://cdk.sourceforge.net
+
+Package: libcdk-java-doc
+Section: contrib/doc
+Architecture: all
+Suggests: libcdk-java
+Description: API documentation of the the Chemistry Development Kit (CDK)
+ The CDK is a library of Java classes used in computational and
+ information chemistry and in bioinformatics. It includes renderers,
+ file IO, SMILES generation/parsing, maximal common substructure
+ algorithms, fingerprinting and much, much more.
+ .
+ This package contains the API documentation of the Chemistry Development
+ Kit (CDK) Java libraries.
diff --git a/debian/libcdk-java-doc.copyright b/debian/libcdk-java-doc.copyright
new file mode 100644
index 0000000..7062982
--- /dev/null
+++ b/debian/libcdk-java-doc.copyright
@@ -0,0 +1,39 @@
+This package was debianized by Daniel Leidert (dale) <daniel.leidert at wgdd.de>.
+
+It was downloaded from http://cdk.sourceforge.net.
+
+Copyright:
+
+ Copyrighted 1997-2005 by The CDK Development Team
+
+Upstream Authors and Contributors:
+
+ The CDK Development Team
+ (Ulrich Bauer, Miguel Rojas Cherto, Fabian Dortu, Matteo Floris,
+ Dan Gezelter, Rajarshi Guha, Yonquan Han, Kai Hartmann,
+ Christian Hoppe, Oliver Horlacher, Miguel Howard, Geert Josten,
+ Anatoli Krassavine, Stefan Kuhn, Daniel Leidert, Edgar Luttmann,
+ Nathana�l Mazuir, Stephan Michels, Peter Murray-Rust, Chris Pudney,
+ Jonathan Rienstra-Kiracofe, David Robinson, Bhupinder Sandhu,
+ Jean-Sebastien Senecal, Sulev Sild, Bradley Smith,
+ Christoph Steinbeck, Stephan Tomkinson, Joerg Wegner,
+ Stephane Werner, Egon Willighagen, Yong Zhang)
+
+License: LGPL
+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+On Debian systems, a copy of the GNU Lesser General Public License, version
+2.1, is available as the file /usr/share/common-licenses/copyright/LGPL.
diff --git a/debian/libcdk-java-doc.dirs b/debian/libcdk-java-doc.dirs
new file mode 100644
index 0000000..e4dadd4
--- /dev/null
+++ b/debian/libcdk-java-doc.dirs
@@ -0,0 +1,2 @@
+usr/share/bug/libcdk-java-doc
+usr/share/doc/libcdk-java-doc/apidoc
diff --git a/debian/libcdk-java-doc.install b/debian/libcdk-java-doc.install
new file mode 100644
index 0000000..42c993d
--- /dev/null
+++ b/debian/libcdk-java-doc.install
@@ -0,0 +1,3 @@
+build-tree/cdk/apidoc/* usr/share/doc/libcdk-java-doc/apidoc
+
+debian/reportbug/control usr/share/bug/libcdk-java-doc
diff --git a/debian/libcdk-java.copyright b/debian/libcdk-java.copyright
new file mode 100644
index 0000000..7062982
--- /dev/null
+++ b/debian/libcdk-java.copyright
@@ -0,0 +1,39 @@
+This package was debianized by Daniel Leidert (dale) <daniel.leidert at wgdd.de>.
+
+It was downloaded from http://cdk.sourceforge.net.
+
+Copyright:
+
+ Copyrighted 1997-2005 by The CDK Development Team
+
+Upstream Authors and Contributors:
+
+ The CDK Development Team
+ (Ulrich Bauer, Miguel Rojas Cherto, Fabian Dortu, Matteo Floris,
+ Dan Gezelter, Rajarshi Guha, Yonquan Han, Kai Hartmann,
+ Christian Hoppe, Oliver Horlacher, Miguel Howard, Geert Josten,
+ Anatoli Krassavine, Stefan Kuhn, Daniel Leidert, Edgar Luttmann,
+ Nathana�l Mazuir, Stephan Michels, Peter Murray-Rust, Chris Pudney,
+ Jonathan Rienstra-Kiracofe, David Robinson, Bhupinder Sandhu,
+ Jean-Sebastien Senecal, Sulev Sild, Bradley Smith,
+ Christoph Steinbeck, Stephan Tomkinson, Joerg Wegner,
+ Stephane Werner, Egon Willighagen, Yong Zhang)
+
+License: LGPL
+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+On Debian systems, a copy of the GNU Lesser General Public License, version
+2.1, is available as the file /usr/share/common-licenses/copyright/LGPL.
diff --git a/debian/libcdk-java.dirs b/debian/libcdk-java.dirs
new file mode 100644
index 0000000..1a09622
--- /dev/null
+++ b/debian/libcdk-java.dirs
@@ -0,0 +1,2 @@
+usr/share/java
+usr/share/bug/libcdk-java
diff --git a/debian/libcdk-java.install b/debian/libcdk-java.install
new file mode 100644
index 0000000..4e1f31c
--- /dev/null
+++ b/debian/libcdk-java.install
@@ -0,0 +1,3 @@
+build-tree/cdk/jar/cdk*.jar usr/share/java
+
+debian/reportbug/control usr/share/bug/libcdk-java
diff --git a/debian/rules b/debian/rules
new file mode 100644
index 0000000..2fa6db3
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,63 @@
+#!/usr/bin/make -f
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/ant.mk
+#include /usr/share/cdbs/1/rules/simple-patchsys.mk
+
+JAVA_HOME := /usr/lib/kaffe
+JAVACMD := /usr/bin/kaffe
+ANT_OPTS := -Xmx256m
+ANT_HOME := /usr/share/ant
+DEB_JARS := \
+ ant-nodeps \
+ javacc \
+ vecmath1.2 \
+ log4j-1.2 \
+ commons-cli
+
+DEB_ANT_COMPILER := jikes
+DEB_ANT_BUILD_TARGET := dist-all
+DEB_ANT_JARS := \
+ gnu-classpath-tools-gjdoc \
+ com-sun-tools-doclets-Taglet \
+ com-sun-javadoc
+
+
+# Additional command-line arguments for Ant
+ANT_ARGS := -verbose
+
+LIBRARY_PACKAGE := cdk
+API_VERSION := 20060211
+
+COMPONENTS := \
+ applications \
+ builder3d \
+ core \
+ data \
+ experimental \
+ extra \
+ interfaces \
+ io \
+ io-jmol \
+ libio-cml \
+ pdb-cml \
+ pdb \
+ qsar-cml \
+ qsar \
+ render \
+ standard \
+ swing
+
+build/$(LIBRARY_PACKAGE)::
+ # Make manpages.
+ @cd debian/cdk-manpages && for mxml in "*.xml"; do \
+ xsltproc /usr/share/xml/docbook/stylesheet/nwalsh/manpages/docbook.xsl $$mxml; \
+ done
+
+install/lib$(LIBRARY_PACKAGE)-java::
+ for COMPONENT in $(COMPONENTS); do \
+ install -m 644 dist/jar/$(LIBRARY_PACKAGE)-$$COMPONENT.jar \
+ debian/lib$(LIBRARY_PACKAGE)-java/usr/share/java/$(LIBRARY_PACKAGE)-$$COMPONENT-$(API_VERSION).jar; \
+ ln -s $(LIBRARY_PACKAGE)-$$COMPONENT-$(API_VERSION).jar \
+ debian/lib$(LIBRARY_PACKAGE)-java/usr/share/java/$(LIBRARY_PACKAGE)-$$COMPONENT.jar; \
+ done
--
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