[Git][java-team/libjaba-client-java][master] 4 commits: Bumping Standards version to 4.5.1 (no changes needed)
Pierre Gruet
gitlab at salsa.debian.org
Sun Jan 17 21:07:55 GMT 2021
Pierre Gruet pushed to branch master at Debian Java Maintainers / libjaba-client-java
Commits:
2cb9c439 by Pierre Gruet at 2021-01-17T14:55:13+01:00
Bumping Standards version to 4.5.1 (no changes needed)
- - - - -
c6843bc3 by Pierre Gruet at 2021-01-17T15:51:35+01:00
Refreshed d/copyright
- - - - -
63ebc186 by Pierre Gruet at 2021-01-17T22:05:14+01:00
Dropping useless (build-)dependency on libdrmaa1.0-java
Parts of the code requiring libdrmaa1.0-java were not included in the jar
min-jaba-client.jar of upstream.
- - - - -
0ce2528b by Pierre Gruet at 2021-01-17T22:07:42+01:00
Updating changelog
- - - - -
7 changed files:
- debian/changelog
- debian/classpath
- debian/control
- debian/copyright
- + debian/patches/change_Configurator_to_avoid_drmaa.patch
- debian/patches/series
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,8 +1,11 @@
libjaba-client-java (2.2.0-2) UNRELEASED; urgency=medium
* Putting the Debian java team as Maintainer in d/control
+ * Bumping Standards version to 4.5.1 (no changes needed)
+ * Dropping dependency on libdrmaa1.0-java, not needed to build the jar
+ designed by upstream.
- -- Pierre Gruet <pgtdebian at free.fr> Sun, 15 Nov 2020 15:40:28 +0100
+ -- Pierre Gruet <pgtdebian at free.fr> Sun, 17 Jan 2021 22:06:29 +0100
libjaba-client-java (2.2.0-1) unstable; urgency=medium
=====================================
debian/classpath
=====================================
@@ -1 +1 @@
-usr/share/java/min-jaba-client.jar /usr/share/java/drmaa.jar /usr/share/java/servlet-api.jar /usr/share/java/log4j-1.2.jar /usr/share/java/jws-api.jar /usr/share/java/jaxws-api.jar /usr/share/java/jaxb-core.jar
+usr/share/java/min-jaba-client.jar /usr/share/java/servlet-api.jar /usr/share/java/log4j-1.2.jar /usr/share/java/jws-api.jar /usr/share/java/jaxws-api.jar /usr/share/java/jaxb-core.jar
=====================================
debian/control
=====================================
@@ -7,13 +7,12 @@ Build-Depends:
debhelper-compat (= 13),
default-jdk,
javahelper,
- libdrmaa1.0-java,
libjaxb-java,
libjaxws-api-java,
libjws-api-java,
liblog4j1.2-java,
libservlet-api-java
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
Vcs-Git: https://salsa.debian.org/java-team/libjaba-client-java.git
Vcs-Browser: https://salsa.debian.org/java-team/libjaba-client-java
Homepage: https://www.compbio.dundee.ac.uk/jabaws/
=====================================
debian/copyright
=====================================
@@ -31,6 +31,11 @@ Files: compbio/stat/servlet/AnnualStatRefresher.java
Copyright: 2017 Fabio Madeira
License: Apache-2.0
+Files: compbio/util/annotation/NotThreadSafe.java
+ compbio/util/annotation/ThreadSafe.java
+Copyright: 2005 Brian Goetz and Tim Peierls
+License: CC-BY-2.5
+
Files: debian/*
Copyright: 2011 Vincent Fourmond <fourmond at debian.org>
2020 Pierre Gruet <pgtdebian at free.fr>
@@ -59,3 +64,247 @@ License: Expat
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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=====================================
debian/patches/change_Configurator_to_avoid_drmaa.patch
=====================================
@@ -0,0 +1,63 @@
+Description: avoid drmaa code in the built jar
+ The min-jaba-client.jar of upstream does not include code in engine/. Thus we
+ strip code so that it does not require useless dependencies.
+Author: Pierre Gruet <pgtdebian at free.fr>
+Forwarded: not-needed
+Last-Update: 2021-01-17
+
+--- a/compbio/engine/Configurator.java
++++ b/compbio/engine/Configurator.java
+@@ -30,8 +30,6 @@
+ import compbio.engine.client.Executable;
+ import compbio.engine.client.PathValidator;
+ import compbio.engine.client.EngineUtil;
+-import compbio.engine.cluster.drmaa.AsyncClusterRunner;
+-import compbio.engine.cluster.drmaa.ClusterRunner;
+ import compbio.engine.conf.DirectoryManager;
+ import compbio.engine.conf.PropertyHelperManager;
+ import compbio.engine.local.AsyncLocalRunner;
+@@ -216,9 +214,6 @@
+ public static AsyncExecutor getAsyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider) {
+
+ assert provider != Executable.ExecProvider.Any && provider != null;
+- if (provider == Executable.ExecProvider.Cluster) {
+- return new AsyncClusterRunner();
+- }
+ return new AsyncLocalRunner();
+ }
+
+@@ -226,31 +221,19 @@
+ throws JobSubmissionException {
+
+ assert provider != Executable.ExecProvider.Any && provider != null;
+- if (provider == Executable.ExecProvider.Cluster) {
+- return ClusterRunner.getInstance(executable);
+- }
+ return new LocalRunner(executable);
+ }
+
+ public static AsyncExecutor getAsyncEngine(ConfiguredExecutable<?> executable) {
+- if (isTargetedForLocalExecution(executable)) {
+- return new AsyncLocalRunner();
+- }
+- return new AsyncClusterRunner();
++ return new AsyncLocalRunner();
+ }
+
+ public static AsyncExecutor getAsyncEngine(String taskId) {
+- if (isLocal(taskId)) {
+- return new AsyncLocalRunner();
+- }
+- return new AsyncClusterRunner();
++ return new AsyncLocalRunner();
+ }
+
+ public static SyncExecutor getSyncEngine(ConfiguredExecutable<?> executable) throws JobSubmissionException {
+- if (isTargetedForLocalExecution(executable)) {
+- return new LocalRunner(executable);
+- }
+- return ClusterRunner.getInstance(executable);
++ return new LocalRunner(executable);
+ }
+
+ static boolean isTargetedForLocalExecution(ConfiguredExecutable<?> executable) {
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
strip-annotations.diff
+change_Configurator_to_avoid_drmaa.patch
=====================================
debian/rules
=====================================
@@ -14,4 +14,6 @@ override_dh_auto_build:
override_jh_build:
mkdir -p src;
cp -af compbio src/
+ # Removing some files that are not in upstream min-jaba-client.jar.
+ rm -Rf src/compbio/engine/cluster/drmaa/
jh_build
View it on GitLab: https://salsa.debian.org/java-team/libjaba-client-java/-/compare/6116f63bbfa35541bd4e852e6046aa1d88e0ade9...0ce2528b420a9250803317910d0ad402f7c36e48
--
View it on GitLab: https://salsa.debian.org/java-team/libjaba-client-java/-/compare/6116f63bbfa35541bd4e852e6046aa1d88e0ade9...0ce2528b420a9250803317910d0ad402f7c36e48
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