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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/java-team/cdk">Debian Java Maintainers / cdk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/java-team/cdk/commit/2d755e6884c4224babf1f2846fdb4f8053fc3ef8">2d755e68</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T16:56:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Manpages are not used any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/cdk/commit/9de14645abf6afcf2236b97c4c07f7c36ef65324">9de14645</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T16:57:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Ant is not used any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/cdk/commit/ef9dad9694d0b3daa578b84c7d987f4c1364a886">ef9dad96</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T17:00:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop old file that was used by ant
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/cdk/commit/8c07b71f62ab375e8d37bd501f05d48279e16a69">8c07b71f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T17:28:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add templates for reference and edam ontology for Egon to be continued
</pre>
</li>
</ul>
<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#52a8ad4b13740bcd1f6373c38d6cc83e64cc7cf6">
<span class="deleted-file">
−
debian/ant.properties
</span>
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</li>
<li class="file-stats">
<a href="#93b927ebd9d1be13cd6be2091c7e22bfdd61b27c">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-dbadmin.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#22d496f2d57e88bb6b20000bae8ca9071844b70a">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-download.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8771bb24121344ec2cfd21798ecbf5af9d63866e">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-fileconvert.xml
</span>
</a>
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<li class="file-stats">
<a href="#5fd8a0b5f21a61ba01bb0a8e3e3e86a3a83e2f5d">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-fingerprinter.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3e763bd08df65ff03ecc7f285a1287ad87f8144">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-guessformat.xml
</span>
</a>
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<li class="file-stats">
<a href="#56bbdc52dfa03e07947780b5cabc1d0303beeb7a">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-iupacname.xml
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<li class="file-stats">
<a href="#127f6fd8f03ef27f0001f2adf2581c12751d06ed">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-substructure.xml
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<li class="file-stats">
<a href="#8c4ebd7ae55d81d6e1298d8975b9ea080939aede">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-test.xml
</span>
</a>
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<li class="file-stats">
<a href="#1491c672fb1c6643530723b689a94e2de0dfe842">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-validate.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#e79b808b803ff52e71fbdb7772e5cb75a76bf16b">
<span class="deleted-file">
−
debian/cdk-manpages/cdk-view.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#452c5d0cb2925d4a92cbd19cdb7b649bdedc1217">
<span class="deleted-file">
−
debian/compile.excludes
</span>
</a>
</li>
<li class="file-stats">
<a href="#555ad7fb0fa2873caacc85eb30c512baefae2cb4">
<span class="new-file">
+
debian/upstream/edam_
</span>
</a>
</li>
<li class="file-stats">
<a href="#1cdd38f0d2aac3cd9e483f7b77beb1e55deb3a23">
<span class="new-file">
+
debian/upstream/metadata_
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="52a8ad4b13740bcd1f6373c38d6cc83e64cc7cf6">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#52a8ad4b13740bcd1f6373c38d6cc83e64cc7cf6"><strong>debian/ant.properties</strong>
deleted
</a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="properties"><span class="py">jar</span><span class="p">=</span><span class="s" style="color: #d14;">/usr/share/java</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="properties"><span class="py">lib</span><span class="p">=</span><span class="s" style="color: #d14;">/usr/share/java</span></span>
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3
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="properties"><span class="py">devellib</span><span class="p">=</span><span class="s" style="color: #d14;">/usr/share/java</span></span>
</pre>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="properties"><span class="py">nowarn</span><span class="p">=</span><span class="s" style="color: #d14;">on</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="properties"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="properties"><span class="c" style="color: #998; font-style: italic;"># CDK 1.0.x does not compile against Weka 2.5.7, see SF bug report #1895295</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="properties"><span class="py">weka.jar</span><span class="p">=</span><span class="s" style="color: #d14;">skip</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="properties"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="properties"><span class="c" style="color: #998; font-style: italic;"># CDK 1.0.x is not tested againt Batik 1.7, see SF feature request #1895300</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="properties"><span class="py">compile.batik</span><span class="p">=</span><span class="s" style="color: #d14;">false</span></span></pre>
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<li id="93b927ebd9d1be13cd6be2091c7e22bfdd61b27c">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#93b927ebd9d1be13cd6be2091c7e22bfdd61b27c"><strong>debian/cdk-manpages/cdk-dbadmin.xml</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-dbadmin"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-dbadmin<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-dbadmin<span class="nt" style="color: #000080;"></refname></span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>administrate chemical database<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-dbadmin<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--useHost [hostname]<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--useDatabase [database name]<span class="nt" style="color: #000080;"></arg></span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--useDriver [mysql|postgresql]<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--username [username]<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--passwd [pwd]<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--createDefaultTables<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--listTables<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--deleteTables<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>OPTIONS<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"><variablelist></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--useHost [hostname]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>sets the hostname of the machine on which the database is run<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--useDatabase [database name]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>sets the name of the database in which the tables are stored<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--useDriver [mysql|postgresql]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>sets the JDBC driver used to access the database (Only MySQL is currently working.)<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--username [username]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>sets the username of the account with which the database can be accessed<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--passwd [pwd]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>sets the password for the account with which the database can be accessed<span class="nt" style="color: #000080;"></para></span></span>
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58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--createDefaultTables<span class="nt" style="color: #000080;"></term></span></span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>create the default tables in the chemical database<span class="nt" style="color: #000080;"></para></span></span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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65
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--listTables<span class="nt" style="color: #000080;"></term></span></span>
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68
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>lists all information on the tables in the chemical database<span class="nt" style="color: #000080;"></para></span></span>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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73
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--deleteTables<span class="nt" style="color: #000080;"></term></span></span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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75
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>deletes all tables from the chemical database<span class="nt" style="color: #000080;"></para></span></span>
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76
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="xml"> <span class="nt" style="color: #000080;"></variablelist></span></span>
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79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="xml"></span>
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81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-dbadmin<span class="nt" style="color: #000080;"></command></span> is used to prepare and delete tables from</span>
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85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="xml"> a chemical database.</span>
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86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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92
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="xml"> $Id: cdk-dbadmin.xml,v 1.1 2002/08/31 14:43:07 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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97
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="xml"> Copyright (C) 2001-2002 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="xml">(at your option) any later version.</span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="xml"></span></pre>
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<li id="22d496f2d57e88bb6b20000bae8ca9071844b70a">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#22d496f2d57e88bb6b20000bae8ca9071844b70a"><strong>debian/cdk-manpages/cdk-download.xml</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-download"</span><span class="nt" style="color: #000080;">></span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-download<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-download<span class="nt" style="color: #000080;"></refname></span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>download chemical information from the internet<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-download<span class="nt" style="color: #000080;"></command></span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>CAS NUMBER<span class="nt" style="color: #000080;"></arg></span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>OPTIONS<span class="nt" style="color: #000080;"></title></span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><variablelist></span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>CAS NUMBER<span class="nt" style="color: #000080;"></term></span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>CAS number of the structure you want to download<span class="nt" style="color: #000080;"></para></span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"></variablelist></span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-download<span class="nt" style="color: #000080;"></command></span> retrieves the 2D coordiante file</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> of the requested compound.</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml"> $Id: cdk-download.xml,v 1.1 2002/08/31 14:43:07 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml"> Copyright (C) 2002 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#8771bb24121344ec2cfd21798ecbf5af9d63866e"><strong>debian/cdk-manpages/cdk-fileconvert.xml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-fileconvert"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-fileconvert<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-fileconvert<span class="nt" style="color: #000080;"></refname></span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>converts one or more files to another format<span class="nt" style="color: #000080;"></refpurpose></span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-fileconvert<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>OPTIONS<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>input files<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>OPTIONS<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><variablelist></span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>-h/--help<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>Print the help<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>-o[format]/--outputformat:[format]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>Defines the output format to use. (See below for a list of</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> possible formats)<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--quesion:[none|fewest|some|all]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>Defines the level of customization of the file IO.<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--listoptions:[format]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>Lists the options of customization of the given file format.<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--properties:[format]<span class="nt" style="color: #000080;"></term></span></span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>Use a Java properties file to define the file IO option</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml"> values.<span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-fileconvert<span class="nt" style="color: #000080;"></command></span> reads a input file and converts</span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="xml"> it to a new file with an other format.</span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="xml"> Supported input formats are</span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="xml"> <span class="nt" style="color: #000080;"><acronym></span>CML<span class="nt" style="color: #000080;"></acronym></span>,</span>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="xml"> <span class="nt" style="color: #000080;"><acronym></span>MDL Molfile<span class="nt" style="color: #000080;"></acronym></span>,</span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="xml"> <span class="nt" style="color: #000080;"><acronym></span>PDB<span class="nt" style="color: #000080;"></acronym></span>,</span>
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68
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="xml"> <span class="nt" style="color: #000080;"><acronym></span>PMP<span class="nt" style="color: #000080;"></acronym></span>,</span>
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69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="xml"> <span class="nt" style="color: #000080;"><acronym></span>SHELX<span class="nt" style="color: #000080;"></acronym></span> and</span>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="xml"> <span class="nt" style="color: #000080;"><acronym></span>XYZ<span class="nt" style="color: #000080;"></acronym></span>. The input format is automatically detected.</span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="xml"> Supported output formats are: cml, gin, mol, pdb, shelx, smi, svg and</span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="xml"> xyz.</span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="xml"> $Id: cdk-fileconvert.xml,v 1.3 2003/07/03 08:48:56 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="xml"> Copyright (C) 2001-2003 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<li id="5fd8a0b5f21a61ba01bb0a8e3e3e86a3a83e2f5d">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#5fd8a0b5f21a61ba01bb0a8e3e3e86a3a83e2f5d"><strong>debian/cdk-manpages/cdk-fingerprinter.xml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-fingerprinter"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-fingerprinter<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-fingerprinter<span class="nt" style="color: #000080;"></refname></span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>generates CDK fingerprints for the given molecules<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-fingerprinter<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>file<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-fingerprinter<span class="nt" style="color: #000080;"></command></span> reads one or more input files</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> and generates CDK fingerprints for all the molecules it finds.</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> $Id: cdk-fingerprinter.xml,v 1.1 2004/01/12 11:50:58 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> Copyright (C) 2003-2004 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#c3e763bd08df65ff03ecc7f285a1287ad87f8144"><strong>debian/cdk-manpages/cdk-guessformat.xml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-guessformat"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-guessformat<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-guessformat<span class="nt" style="color: #000080;"></refname></span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>guesses the file format of a file<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-guessformat<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>file<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-guessformat<span class="nt" style="color: #000080;"></command></span> reads an input file and tries</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> to determine the file format.</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> $Id: cdk-guessformat.xml,v 1.1 2003/05/27 14:33:52 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> Copyright (C) 2003 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<li id="56bbdc52dfa03e07947780b5cabc1d0303beeb7a">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#56bbdc52dfa03e07947780b5cabc1d0303beeb7a"><strong>debian/cdk-manpages/cdk-iupacname.xml</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-iupacname"</span><span class="nt" style="color: #000080;">></span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-iupacname<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-iupacname<span class="nt" style="color: #000080;"></refname></span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>generates the IUPAC name for the given molecule<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-iupacname<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>file<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-iupacname<span class="nt" style="color: #000080;"></command></span> reads an input file and tries</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> to generate a IUPAC name for this structure. Currently only</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> a few IUPAC rules are implemented, but simple alkane structures</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> can be named.</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> The output language can be set using <span class="nt" style="color: #000080;"><arg></span>--dutch<span class="nt" style="color: #000080;"></arg></span> or</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>--german<span class="nt" style="color: #000080;"></arg></span>.</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> $Id: cdk-iupacname.xml,v 1.1 2003/08/15 08:13:40 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml"> Copyright (C) 2003 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#127f6fd8f03ef27f0001f2adf2581c12751d06ed"><strong>debian/cdk-manpages/cdk-substructure.xml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-substructure"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-substructure<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-substructure<span class="nt" style="color: #000080;"></refname></span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>searches through a set of files to find a given</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> substructure<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-substructure<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>SMILES<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>files<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-substructure<span class="nt" style="color: #000080;"></command></span> reads one or more an input files</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> and determines wether the structure given by the SMILES (after removal</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> of hydrogens) is a substructure of the input file.</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> $Id: cdk-substructure.xml,v 1.1 2003/08/15 08:13:40 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> Copyright (C) 2003 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#8c4ebd7ae55d81d6e1298d8975b9ea080939aede"><strong>debian/cdk-manpages/cdk-test.xml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-test"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-test<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-test<span class="nt" style="color: #000080;"></refname></span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>perform JUnit tests on CDK classes<span class="nt" style="color: #000080;"></refpurpose></span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-test<span class="nt" style="color: #000080;"></command></span> <span class="nt" style="color: #000080;"><arg></span>JUnit test<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-test<span class="nt" style="color: #000080;"></command></span> opens up a JUnit window for testing</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> CDK classes. The optional argument is used to set the JUnit test</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> that is loaded, e.g. org.openscience.cdk.test.CDKTests.</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> $Id: cdk-test.xml,v 1.1 2003/01/01 16:42:09 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> Copyright (C) 2001-2003 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<li id="1491c672fb1c6643530723b689a94e2de0dfe842">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#1491c672fb1c6643530723b689a94e2de0dfe842"><strong>debian/cdk-manpages/cdk-validate.xml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-validate"</span><span class="nt" style="color: #000080;">></span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refmeta></span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-validate<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-validate<span class="nt" style="color: #000080;"></refname></span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>checks the chemical content of a file<span class="nt" style="color: #000080;"></refpurpose></span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-validate<span class="nt" style="color: #000080;"></command></span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><arg></span>file<span class="nt" style="color: #000080;"></arg></span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-validate<span class="nt" style="color: #000080;"></command></span> reads an input file and checks wether</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> the chemistry that is described in that file is correct, or might contain</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> problems.</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> $Id: cdk-validate.xml,v 1.1 2003/07/14 20:57:59 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> Copyright (C) 2003 The CDK Project</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#e79b808b803ff52e71fbdb7772e5cb75a76bf16b"><strong>debian/cdk-manpages/cdk-view.xml</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><refentry</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"cdk-view"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refentrytitle></span>cdk-view<span class="nt" style="color: #000080;"></refentrytitle></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><manvolnum></span>1<span class="nt" style="color: #000080;"></manvolnum></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refmeta></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refname></span>cdk-view<span class="nt" style="color: #000080;"></refname></span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refpurpose></span>view content of chemical file<span class="nt" style="color: #000080;"></refpurpose></span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refnamediv></span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-view<span class="nt" style="color: #000080;"></command></span> <span class="nt" style="color: #000080;"><arg></span>--nojava3d<span class="nt" style="color: #000080;"></arg></span> <span class="nt" style="color: #000080;"><arg></span>--no3d<span class="nt" style="color: #000080;"></arg></span> <span class="nt" style="color: #000080;"><arg></span>--useJmol<span class="nt" style="color: #000080;"></arg></span> <span class="nt" style="color: #000080;"><arg></span>file.xml<span class="nt" style="color: #000080;"></arg></span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-view<span class="nt" style="color: #000080;"></command></span> <span class="nt" style="color: #000080;"><arg></span>--smiles<span class="nt" style="color: #000080;"></arg></span> <span class="nt" style="color: #000080;"><arg></span>SMILES<span class="nt" style="color: #000080;"></arg></span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></cmdsynopsis></span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>OPTIONS<span class="nt" style="color: #000080;"></title></span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><variablelist></span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--nojava3d<span class="nt" style="color: #000080;"></term></span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>do not try to use Java3D for viewing 3D coordinates<span class="nt" style="color: #000080;"></para></span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--no3d<span class="nt" style="color: #000080;"></term></span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>do not view 3D coordinates<span class="nt" style="color: #000080;"></para></span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--smiles<span class="nt" style="color: #000080;"></term></span></span>
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37
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>show a 2D representation of the SMILES<span class="nt" style="color: #000080;"></para></span></span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="xml"> <span class="nt" style="color: #000080;"><varlistentry></span></span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="xml"> <span class="nt" style="color: #000080;"><term></span>--useTree<span class="nt" style="color: #000080;"></term></span></span>
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43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="xml"> <span class="nt" style="color: #000080;"><listitem></span></span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span>shows a ChemObjectTree of the loaded file<span class="nt" style="color: #000080;"></para></span></span>
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45
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"></listitem></span></span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="xml"> <span class="nt" style="color: #000080;"></varlistentry></span></span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="xml"> <span class="nt" style="color: #000080;"></variablelist></span></span>
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48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>DESCRIPTION<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="xml"> <span class="nt" style="color: #000080;"><command></span>cdk-view<span class="nt" style="color: #000080;"></command></span> displays to content of the file</span>
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54
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="xml"> <span class="nt" style="color: #000080;"><filename></span>file.xml<span class="nt" style="color: #000080;"></filename></span> with the format CML, IChI, MDLMol,</span>
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55
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="xml"> PDB and XYZ.</span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>VERSION<span class="nt" style="color: #000080;"></title></span></span>
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61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="xml"> $Id: cdk-view.xml,v 1.3 2003/01/01 16:42:09 egonw Exp $</span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="xml"></span>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>COPYRIGHT<span class="nt" style="color: #000080;"></title></span></span>
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68
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="xml"> Copyright (C) 2001-2002 The CDK Project</span>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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72
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="xml">This program is free software; you can redistribute it and/or modify</span>
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73
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="xml">it under the terms of the GNU General Public License as published by</span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="xml">the Free Software Foundation; either version 2 of the License, or</span>
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75
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="xml">(at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="xml">This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="xml">but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="xml">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="xml">GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="xml"> <span class="nt" style="color: #000080;"><refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="xml"> <span class="nt" style="color: #000080;"><title></span>AUTHOR<span class="nt" style="color: #000080;"></title></span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="xml"> <span class="nt" style="color: #000080;"><para></span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="xml"> Egon Willighagen <span class="nt" style="color: #000080;"><email></span>egonw@sci.kun.nl<span class="nt" style="color: #000080;"></email></span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="xml"> <span class="nt" style="color: #000080;"></para></span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="xml"> <span class="nt" style="color: #000080;"></refsect1></span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="xml"></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="xml"><span class="nt" style="color: #000080;"></refentry></span></span></pre>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#452c5d0cb2925d4a92cbd19cdb7b649bdedc1217"><strong>debian/compile.excludes</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">**/Convertor.java</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">**/CMLWriter.java</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">**/RssWriter.java</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">**/PDBAtomCustomizer.java</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">**/MDMoleculeCustomizer.java</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">**/R/RModel.java</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">**/CNNClassificationModel.java</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">**/R/CNNRegressionModel.java</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">**/R/LinearRegressionModel.java</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">**/PLSRegressionModel.java</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">**/QSARCustomizer.java</span></pre>
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<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#555ad7fb0fa2873caacc85eb30c512baefae2cb4"><strong>debian/upstream/edam_</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">ontology: EDAM (1.16)</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">topic:</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> - Sequence analysis</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">scopes:</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - name: summary</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> function:</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> - Multiple sequence alignment</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> input:</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> - data: Sequence</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> formats:</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> - EMBL format</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> - FASTA</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> - GCG</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> - GenBank format</span>
</pre>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> - nbrf/pir</span>
</pre>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> - PHYLIP format</span>
</pre>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> - UniProtKB format</span>
</pre>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> - data: Gene tree</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> output:</span>
</pre>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> - data: Alignment</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> formats:</span>
</pre>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> - FASTA-aln</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> - PHYLIP format</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> - selex</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> - Stockholm format</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> - Vienna local RNA secondary structure format</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> - data: Phylogenetic tree</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> formats: [Phylip tree format]</span></pre>
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<li id="1cdd38f0d2aac3cd9e483f7b77beb1e55deb3a23">
<a href="https://salsa.debian.org/java-team/cdk/compare/1c4ac36f122b08b13711f2de7c671e961e21a853...8c07b71f62ab375e8d37bd501f05d48279e16a69#1cdd38f0d2aac3cd9e483f7b77beb1e55deb3a23"><strong>debian/upstream/metadata_</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Reference:</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> Author: </span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Title: </span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Journal: </span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Year: </span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Volume: </span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Number: </span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Pages: </span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> DOI: </span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> PMID:</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> URL: </span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> eprint: </span></pre>
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