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<h3>
Andrius Merkys pushed to branch master
at <a href="https://salsa.debian.org/java-team/openchemlib">Debian Java Maintainers / openchemlib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/java-team/openchemlib/-/commit/b6db74768434112c23a6f2f7b1f5da246267ccb3">b6db7476</a></strong>
<div>
<span>by Andrius Merkys</span>
<i>at 2020-12-14T02:52:08-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2020.12.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/openchemlib/-/commit/81b70ed0dd5faf1f0f9b4552a1983ca0f118f575">81b70ed0</a></strong>
<div>
<span>by Andrius Merkys</span>
<i>at 2020-12-14T02:52:39-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2020.12.1+dfsg'
Update to upstream version '2020.12.1+dfsg'
with Debian dir b5f8865328a03fd49930f20650109924d1aca47c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/openchemlib/-/commit/7db1032fb77c61c8624512aaf93431d9b4e49da5">7db1032f</a></strong>
<div>
<span>by Andrius Merkys</span>
<i>at 2020-12-14T03:06:04-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/openchemlib/-/commit/a7fd213ee0b1ef8a3a5c279a138bd0673368829e">a7fd213e</a></strong>
<div>
<span>by Andrius Merkys</span>
<i>at 2020-12-14T03:06:22-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog for 2020.12.1+dfsg-1 release
</pre>
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<h4>11 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#86f5ff6c6075c2da045f28d3e5f76380f5c1292e">
debian/patches/javafx.patch
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<li class="file-stats">
<a href="#f28e061bd04986660d21d2f6096ef23b697bd93e">
debian/patches/libtablelayout-java.patch
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<li class="file-stats">
<a href="#442292b8a7efeabbe4cc176709b833b1792140ec">
pom.xml
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<li class="file-stats">
<a href="#740d1b62554de0bb4911a3fc23e2387b26c0a2b4">
src/main/java/com/actelion/research/chem/AromaticityResolver.java
</a>
</li>
<li class="file-stats">
<a href="#a366ae93c6b2697647f789b85e058d12270016b2">
src/main/java/com/actelion/research/chem/ExtendedMolecule.java
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<li class="file-stats">
<a href="#a1ec33c7804dfaa6cf903376c9e2af00e9a9a224">
src/main/java/com/actelion/research/chem/IDCodeParserWithoutCoordinateInvention.java
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<li class="file-stats">
<a href="#7591869d39cf992c9eaa2bbe2598c5927a014b3b">
src/main/java/com/actelion/research/chem/Molecule.java
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<li class="file-stats">
<a href="#cf40108c840165d004c28f26bbfd06fa9b0a6a27">
src/main/java/com/actelion/research/chem/io/CompoundTableConstants.java
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<li class="file-stats">
<a href="#907c2e3091651a4e6bbeeab6ab2511b6fd8b4b72">
src/main/java/com/actelion/research/gui/CompoundCollectionPane.java
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</li>
<li class="file-stats">
<a href="#0037b516f3ace2a72eb80057cedd069f64f3ae56">
<span class="new-file">
+
src/main/java/com/actelion/research/gui/ScrollPaneAutoScrollerWhenDragging.java
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</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">openchemlib (2020.12.1+dfsg-1) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version 2020.12.1+dfsg</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Refreshing patches.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Andrius Merkys <merkys@debian.org> Mon, 14 Dec 2020 03:06:17 -0500</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">openchemlib (2020.12.0+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * New upstream version 2020.12.0+dfsg</span>
</pre>
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<li id="86f5ff6c6075c2da045f28d3e5f76380f5c1292e">
<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#86f5ff6c6075c2da045f28d3e5f76380f5c1292e"><strong>debian/patches/javafx.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/pom.xml</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/pom.xml</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">@@ -10<span class="idiff left right">1,6 +101</span>,21 @@</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -10<span class="idiff left right">7,6 +107</span>,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> <version>4.13.1</version></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> <scope>test</scope></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> </dependency></span>
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<li id="f28e061bd04986660d21d2f6096ef23b697bd93e">
<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#f28e061bd04986660d21d2f6096ef23b697bd93e"><strong>debian/patches/libtablelayout-java.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/pom.xml</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/pom.xml</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">16,6 +116</span>,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">22,6 +122</span>,10 @@</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> <artifactId>javafx-graphics</artifactId></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> <version>11</version></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> </dependency></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#442292b8a7efeabbe4cc176709b833b1792140ec"><strong>pom.xml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="xml"><span class="c" style="color: #998; font-style: italic;"> Please follow the naming scheme YEAR.MONTH.RELEASE_NO_OF_MONTH</span></span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="xml"><span class="c" style="color: #998; font-style: italic;"> (eg. 2016.4.1 for second release in Apr 2016)</span></span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="xml"><span class="c" style="color: #998; font-style: italic;"> --></span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"><version></span>2020.12.<span class="idiff left right">0</span><span class="nt" style="color: #000080;"></version></span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"><version></span>2020.12.<span class="idiff left right">1</span><span class="nt" style="color: #000080;"></version></span></span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="xml"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><name></span>OpenChemLib<span class="nt" style="color: #000080;"></name></span></span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><description></span>Open Source Chemistry Library<span class="nt" style="color: #000080;"></description></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -195,7 +195,7 @@</td>
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195
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="xml"> <span class="nt" style="color: #000080;"><connection></span>scm:git:git@github.com:Actelion/openchemlib.git<span class="nt" style="color: #000080;"></connection></span></span>
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="xml"> <span class="nt" style="color: #000080;"><developerConnection></span>scm:git:git@github.com:Actelion/openchemlib.git<span class="nt" style="color: #000080;"></developerConnection></span></span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="xml"> <span class="nt" style="color: #000080;"><url></span>https://github.com/Actelion/openchemlib<span class="nt" style="color: #000080;"></url></span></span>
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198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="xml"> <span class="nt" style="color: #000080;"><tag></span>openchemlib-2020.12.<span class="idiff left right">0</span><span class="nt" style="color: #000080;"></tag></span></span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="xml"> <span class="nt" style="color: #000080;"><tag></span>openchemlib-2020.12.<span class="idiff left right">1</span><span class="nt" style="color: #000080;"></tag></span></span>
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199
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="xml"> <span class="nt" style="color: #000080;"></scm></span></span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="xml"></span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="xml"> <span class="nt" style="color: #000080;"><distributionManagement></span></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#740d1b62554de0bb4911a3fc23e2387b26c0a2b4"><strong>src/main/java/com/actelion/research/chem/AromaticityResolver.java</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -672,28 +672,34 @@ public class AromaticityResolver {</td>
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<pre style="margin: 0;"> <span id="LC672" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="nf" style="color: #900; font-weight: 600;">checkAtomTypePi1</span><span class="o" style="font-weight: 600;">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="n" style="color: #333;">correctCharge</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC673" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAtomicNo</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC674" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">>=</span><span class="mi" style="color: #099;">5</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">8</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;">-<span id="LC675" class="line" lang="java"> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">15</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">33</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">34</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span> <span class="c1" style="color: #998; font-style: italic;">// P,S,As,Se</span></span>
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<pre style="margin: 0;">-<span id="LC676" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">freeValence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getFreeValence</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">-<span id="LC677" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">freeValence</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">freeValence</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">)</span> <span class="c1" style="color: #998; font-style: italic;">// we allow one more free valence, because the atom may have a missing charge</span></span>
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="java"> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">15</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">33</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">34</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">52</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span> <span class="c1" style="color: #998; font-style: italic;">// P,S,As,Se,Te</span></span>
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="java"><span class="c1" style="color: #998; font-style: italic;">// Old logic seems fishy to me; TLS 10Dec2020</span></span>
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<pre style="margin: 0;">+<span id="LC678" class="line" lang="java"><span class="c1" style="color: #998; font-style: italic;">// int freeValence = mMol.getFreeValence(atom);</span></span>
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<pre style="margin: 0;">+<span id="LC679" class="line" lang="java"><span class="c1" style="color: #998; font-style: italic;">// if (freeValence == 1 || freeValence == 2) // we allow one more free valence, because the atom may have a missing charge</span></span>
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<pre style="margin: 0;">+<span id="LC680" class="line" lang="java"><span class="c1" style="color: #998; font-style: italic;">// return true;</span></span>
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<pre style="margin: 0;">+<span id="LC682" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">freeValence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getLowestFreeValence</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">+<span id="LC683" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">freeValence</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;"> <span id="LC684" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">true</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC685" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC686" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAtomCharge</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">-<span id="LC681" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">15</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">33</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;"><span class="idiff left">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">freeValence</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">3</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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687
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<pre style="margin: 0;">+<span id="LC687" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">15</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">33</span><span class="o" style="font-weight: 600;">)</span> <span class="cm" style="color: #998; font-style: italic;"><span class="idiff left right">/* && freeValence == 3 */</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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688
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<pre style="margin: 0;"> <span id="LC688" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">correctCharge</span><span class="o" style="font-weight: 600;">)</span></span>
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689
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<pre style="margin: 0;"> <span id="LC689" class="line" lang="java"> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">setAtomCharge</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC690" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">true</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC691" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC686" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">34</span><span class="o" style="font-weight: 600;"><span class="idiff left">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">freeValence</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">4</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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692
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">34</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">atomicNo</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">52</span></span><span class="o" style="font-weight: 600;"><span class="idiff">)</span></span><span class="idiff"> </span><span class="cm" style="color: #998; font-style: italic;"><span class="idiff right">/* && freeValence == 4 */</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC693" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">correctCharge</span><span class="o" style="font-weight: 600;">)</span></span>
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694
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<pre style="margin: 0;"> <span id="LC694" class="line" lang="java"> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">setAtomCharge</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC695" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">true</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC696" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC691" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">5</span> <span class="o" style="font-weight: 600;"><span class="idiff left">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">freeValence</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">5</span> <span class="cm" style="color: #998; font-style: italic;"><span class="idiff left right">/* && freeValence == 0 */</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC698" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">correctCharge</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;"> <span id="LC699" class="line" lang="java"> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">setAtomCharge</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">,</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC700" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">true</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC701" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC696" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">7</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">8</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;"><span class="idiff left">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">freeValence</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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702
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">7</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">atomicNo</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">8</span><span class="o" style="font-weight: 600;">)</span> <span class="cm" style="color: #998; font-style: italic;"><span class="idiff left right">/* && freeValence == 0 */</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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703
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<pre style="margin: 0;"> <span id="LC703" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">correctCharge</span><span class="o" style="font-weight: 600;">)</span></span>
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704
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<pre style="margin: 0;"> <span id="LC704" class="line" lang="java"> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">setAtomCharge</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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699
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705
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<pre style="margin: 0;"> <span id="LC705" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">true</span><span class="o" style="font-weight: 600;">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -725,7 +731,7 @@ public class AromaticityResolver {</td>
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725
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731
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<pre style="margin: 0;"> <span id="LC731" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getConnAtoms</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span><span class="o" style="font-weight: 600;">)</span></span>
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726
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732
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<pre style="margin: 0;"> <span id="LC732" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">8</span><span class="o" style="font-weight: 600;">;</span></span>
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733
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<pre style="margin: 0;"> <span id="LC733" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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728
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<pre style="margin: 0;">-<span id="LC728" class="line" lang="java"> <span class="k" style="font-weight: 600;">else</span> <span class="nf" style="color: #900; font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAtomicNo</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAtomicNo</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">34</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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734
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="java"> <span class="k" style="font-weight: 600;">else</span> <span class="nf" style="color: #900; font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAtomicNo</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAtomicNo</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">34</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">mMol</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="na" style="color: #008080;"><span class="idiff">getAtomicNo</span></span><span class="o" style="font-weight: 600;"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">atom</span></span><span class="o" style="font-weight: 600;"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">52</span></span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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735
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<pre style="margin: 0;"> <span id="LC735" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mMol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getConnAtoms</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">atom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;"> <span id="LC736" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">12</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC737" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#a366ae93c6b2697647f789b85e058d12270016b2"><strong>src/main/java/com/actelion/research/chem/ExtendedMolecule.java</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -548,7 +548,7 @@ public class ExtendedMolecule extends Molecule implements Serializable {</td>
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="java"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="java"><span class="cm" style="color: #998; font-style: italic;"> * The free valence is the number of potential additional single bonded</span></span>
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="java"><span class="cm" style="color: #998; font-style: italic;"> * The <span class="idiff left right">lowest </span>free valence is the number of potential additional single bonded</span></span>
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<pre style="margin: 0;"> <span id="LC552" class="line" lang="java"><span class="cm" style="color: #998; font-style: italic;"> * neighbours to reach the atom's lowest valence above or equal its current</span></span>
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<pre style="margin: 0;"> <span id="LC553" class="line" lang="java"><span class="cm" style="color: #998; font-style: italic;"> * occupied valence. Atom charges are considered. Implicit hydrogens are not considered.</span></span>
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="java"><span class="cm" style="color: #998; font-style: italic;"> * Thus, the phosphor atoms in PF2 and PF4 both have a lowest free valence of 1.</span></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#a1ec33c7804dfaa6cf903376c9e2af00e9a9a224"><strong>src/main/java/com/actelion/research/chem/IDCodeParserWithoutCoordinateInvention.java</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -957,20 +957,24 @@ public class IDCodeParserWithoutCoordinateInvention {</td>
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<pre style="margin: 0;"> <span id="LC957" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC958" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC959" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="nf" style="color: #900; font-weight: 600;">coordinatesAre3D</span><span class="o" style="font-weight: 600;">(</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">idcode</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">-<span id="LC960" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">coordinates</span> <span class="o" style="font-weight: 600;">==</span> <span class="kc" style="font-weight: 600;">null</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">length</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;">+<span id="LC960" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="nf" style="color: #900; font-weight: 600;">coordinatesAre3D</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">idcode</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">+<span id="LC961" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC962" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC963" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="nf" style="color: #900; font-weight: 600;">coordinatesAre3D</span><span class="o" style="font-weight: 600;">(</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">idcode</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">idcodeStart</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">coordsStart</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC964" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">coordinates</span> <span class="o" style="font-weight: 600;">==</span> <span class="kc" style="font-weight: 600;">null</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">length</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">coordsStart</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;"> <span id="LC965" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">false</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC966" class="line" lang="java"></span>
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<pre style="margin: 0;">-<span id="LC963" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">[</span><span class="mi" style="color: #099;"><span class="idiff left">0</span></span><span class="o" style="font-weight: 600;"><span class="idiff">]</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="sc" style="color: #d14;"><span class="idiff">'!'</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">coordinates</span></span><span class="o" style="font-weight: 600;"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'#'</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC967" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">[</span><span class="n" style="color: #333;"><span class="idiff left">coordsStart</span></span><span class="o" style="font-weight: 600;"><span class="idiff">]</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="sc" style="color: #d14;"><span class="idiff">'!'</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">coordinates</span></span><span class="o" style="font-weight: 600;"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff right">coordsStart</span></span><span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'#'</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC968" class="line" lang="java"> <span class="c1" style="color: #998; font-style: italic;">// current version starts with '!' (ASC 33) or '#' (ASC 35) (includs implicit hydrogen coordinates)</span></span>
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965
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969
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<pre style="margin: 0;"> <span id="LC969" class="line" lang="java"> <span class="c1" style="color: #998; font-style: italic;">// further versions may start with ASC 36 to 38</span></span>
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966
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<pre style="margin: 0;">-<span id="LC966" class="line" lang="java"> <span class="n" style="color: #333;">decodeBitsStart</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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970
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<pre style="margin: 0;">+<span id="LC970" class="line" lang="java"> <span class="n" style="color: #333;">decodeBitsStart</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;"><span class="idiff left">coordsStart</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">+</span></span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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967
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971
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<pre style="margin: 0;"> <span id="LC971" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">decodeBits</span><span class="o" style="font-weight: 600;">(</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
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968
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972
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<pre style="margin: 0;"> <span id="LC972" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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969
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973
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<pre style="margin: 0;"> <span id="LC973" class="line" lang="java"> <span class="k" style="font-weight: 600;">else</span> <span class="o" style="font-weight: 600;">{</span> <span class="c1" style="color: #998; font-style: italic;">// old format uses ACSII 39 and higher</span></span>
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970
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<pre style="margin: 0;">-<span id="LC970" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">allAtoms</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getAtomCount</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">idcode</span><span class="o" style="font-weight: 600;">,</span> <span class="mi" style="color: #099;"><span class="idiff left right">0</span></span><span class="o" style="font-weight: 600;">);</span></span>
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974
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<pre style="margin: 0;">+<span id="LC974" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">allAtoms</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getAtomCount</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">idcode</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;"><span class="idiff left right">idcodeStart</span></span><span class="o" style="font-weight: 600;">);</span></span>
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971
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975
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<pre style="margin: 0;"> <span id="LC975" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">allAtoms</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span></span>
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972
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<pre style="margin: 0;">-<span id="LC972" class="line" lang="java"> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">length</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">3</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">allAtoms</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">3</span></span>
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973
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<pre style="margin: 0;">-<span id="LC973" class="line" lang="java"> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">allAtoms</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'\''</span><span class="o" style="font-weight: 600;">);</span></span>
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976
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<pre style="margin: 0;">+<span id="LC976" class="line" lang="java"> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">length</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;"><span class="idiff left">coordsStart</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">+</span></span><span class="mi" style="color: #099;">3</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">allAtoms</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">3</span></span>
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977
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<pre style="margin: 0;">+<span id="LC977" class="line" lang="java"> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">coordinates</span><span class="o" style="font-weight: 600;">[</span><span class="n" style="color: #333;"><span class="idiff left">coordsStart</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">+</span></span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">allAtoms</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'\''</span><span class="o" style="font-weight: 600;">);</span></span>
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974
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978
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<pre style="margin: 0;"> <span id="LC978" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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979
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<pre style="margin: 0;"> <span id="LC979" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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976
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980
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<pre style="margin: 0;"> <span id="LC980" class="line" lang="java"></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#7591869d39cf992c9eaa2bbe2598c5927a014b3b"><strong>src/main/java/com/actelion/research/chem/Molecule.java</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3775" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3775,6 +3775,7 @@ public class Molecule implements Serializable {</td>
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3775
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<pre style="margin: 0;"> <span id="LC3775" class="line" lang="java"> <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">33</span><span class="o" style="font-weight: 600;">:</span> <span class="c1" style="color: #998; font-style: italic;">// As</span></span>
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3776
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3776
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<pre style="margin: 0;"> <span id="LC3776" class="line" lang="java"> <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">34</span><span class="o" style="font-weight: 600;">:</span> <span class="c1" style="color: #998; font-style: italic;">// Se</span></span>
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<pre style="margin: 0;"> <span id="LC3777" class="line" lang="java"> <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">35</span><span class="o" style="font-weight: 600;">:</span> <span class="c1" style="color: #998; font-style: italic;">// Br</span></span>
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<pre style="margin: 0;">+<span id="LC3778" class="line" lang="java"> <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">52</span><span class="o" style="font-weight: 600;">:</span> <span class="c1" style="color: #998; font-style: italic;">// Te</span></span>
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3778
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3779
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<pre style="margin: 0;"> <span id="LC3779" class="line" lang="java"> <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">53</span><span class="o" style="font-weight: 600;">:</span> <span class="c1" style="color: #998; font-style: italic;">// I</span></span>
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3779
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3780
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<pre style="margin: 0;"> <span id="LC3780" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="kc" style="font-weight: 600;">true</span><span class="o" style="font-weight: 600;">;</span></span>
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3781
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<pre style="margin: 0;"> <span id="LC3781" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#cf40108c840165d004c28f26bbfd06fa9b0a6a27"><strong>src/main/java/com/actelion/research/chem/io/CompoundTableConstants.java</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,7 +91,7 @@ public interface CompoundTableConstants {</td>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">cStructureHiliteModeFilter</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">cStructureHiliteModeCurrentRow</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">cStructureHiliteModeNone</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">cStructureHiliteModeText</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">{</span> <span class="s" style="color: #d14;">"Most Recent Filter"</span><span class="o" style="font-weight: 600;">,</span> <span class="s" style="color: #d14;">"<span class="idiff left right">Current Row Similarity</span>"</span><span class="o" style="font-weight: 600;">,</span> <span class="s" style="color: #d14;">"No Highlighting"</span> <span class="o" style="font-weight: 600;">};</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">cStructureHiliteModeText</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">{</span> <span class="s" style="color: #d14;">"Most Recent Filter"</span><span class="o" style="font-weight: 600;">,</span> <span class="s" style="color: #d14;">"<span class="idiff left right">Similarity To Reference Row</span>"</span><span class="o" style="font-weight: 600;">,</span> <span class="s" style="color: #d14;">"No Highlighting"</span> <span class="o" style="font-weight: 600;">};</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">cStructureHiliteModeCode</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">{</span> <span class="s" style="color: #d14;">"hiliteFilter"</span><span class="o" style="font-weight: 600;">,</span> <span class="s" style="color: #d14;">"hiliteCurrent"</span><span class="o" style="font-weight: 600;">,</span> <span class="s" style="color: #d14;">"hiliteNone"</span> <span class="o" style="font-weight: 600;">};</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="java"> <span class="c1" style="color: #998; font-style: italic;">// highlight mode for part-of-reaction highlighting depending on current record similarity</span></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#907c2e3091651a4e6bbeeab6ab2511b6fd8b4b72"><strong>src/main/java/com/actelion/research/gui/CompoundCollectionPane.java</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,6 +79,8 @@ public class CompoundCollectionPane<T> extends JScrollPane</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="nc" style="color: #458; font-weight: 600;">JPanel</span> <span class="n" style="color: #333;">mContentPanel</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="n" style="color: #333;">mIsVertical</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">mIsEditable</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">mIsSelectable</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">mCreateFragments</span><span class="o" style="font-weight: 600;">,</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="java"> <span class="n" style="color: #333;">mIsEnabled</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">mShowValidationError</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">mInternalDragAndDropIsMove</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="nc" style="color: #458; font-weight: 600;">ScrollPaneAutoScrollerWhenDragging</span> <span class="n" style="color: #333;">mScroller</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="java"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="java"><span class="cm" style="color: #998; font-style: italic;"> * This is a visual component to display and edit a compound collection maintained</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,6 +110,7 @@ public class CompoundCollectionPane<T> extends JScrollPane</td>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="java"> <span class="n" style="color: #333;">mDropIndex</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="java"> <span class="n" style="color: #333;">init</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="java"> <span class="n" style="color: #333;">initializeDragAndDrop</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">dragAction</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">dropAction</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="java"> <span class="n" style="color: #333;">mScroller</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="nc" style="color: #458; font-weight: 600;">ScrollPaneAutoScrollerWhenDragging</span><span class="o" style="font-weight: 600;">(</span><span class="k" style="font-weight: 600;">this</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">isVertical</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="nc" style="color: #458; font-weight: 600;">CompoundCollectionModel</span><span class="o" style="font-weight: 600;"><</span><span class="no" style="color: #008080;">T</span><span class="o" style="font-weight: 600;">></span> <span class="nf" style="color: #900; font-weight: 600;">getModel</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -424,7 +427,7 @@ public class CompoundCollectionPane<T> extends JScrollPane</td>
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<pre style="margin: 0;"> <span id="LC427" class="line" lang="java"> <span class="n" style="color: #333;">g</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">drawString</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"?"</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">x</span><span class="o" style="font-weight: 600;">+(</span><span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">width</span><span class="o" style="font-weight: 600;">-(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">)</span><span class="n" style="color: #333;">b</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getWidth</span><span class="o" style="font-weight: 600;">())/</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">y</span><span class="o" style="font-weight: 600;">+(</span><span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">height</span><span class="o" style="font-weight: 600;">-(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">)</span><span class="n" style="color: #333;">b</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getHeight</span><span class="o" style="font-weight: 600;">())/</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAscent</span><span class="o" style="font-weight: 600;">());</span></span>
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<pre style="margin: 0;"> <span id="LC428" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC429" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="java"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC431" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">Depictor2D</span> <span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="nc" style="color: #458; font-weight: 600;">Depictor2D</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">compound</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">mDisplayMode</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC432" class="line" lang="java"> <span class="n" style="color: #333;">d</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">validateView</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">g</span><span class="o" style="font-weight: 600;">,</span></span>
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="java"> <span class="k" style="font-weight: 600;">new</span> <span class="nc" style="color: #458; font-weight: 600;">Rectangle2D</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">Double</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">x</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">y</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">width</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">bounds</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">height</span><span class="o" style="font-weight: 600;">),</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -706,6 +709,7 @@ public class CompoundCollectionPane<T> extends JScrollPane</td>
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709
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<pre style="margin: 0;"> <span id="LC709" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC710" class="line" lang="java"> <span class="nd">@Override</span></span>
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<pre style="margin: 0;"> <span id="LC711" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">dragOver</span><span class="o" style="font-weight: 600;">(</span><span class="nc" style="color: #458; font-weight: 600;">DropTargetDragEvent</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC712" class="line" lang="java"> <span class="n" style="color: #333;">mScroller</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">autoScroll</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;"> <span id="LC713" class="line" lang="java"> <span class="n" style="color: #333;">updateDropPosition</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">getDropIndex</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">));</span></span>
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<pre style="margin: 0;"> <span id="LC714" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC715" class="line" lang="java"></span>
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<a href="https://salsa.debian.org/java-team/openchemlib/-/compare/c1316dfc3459d1af730a8dbceb79f5a32377fce3...a7fd213ee0b1ef8a3a5c279a138bd0673368829e#0037b516f3ace2a72eb80057cedd069f64f3ae56"><strong>src/main/java/com/actelion/research/gui/ScrollPaneAutoScrollerWhenDragging.java</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="java"><span class="kn" style="font-weight: 600;">package</span> <span class="nn" style="color: #555;">com.actelion.research.gui</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="java"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">com.actelion.research.gui.hidpi.HiDPIHelper</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="java"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">javax.swing.*</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="java"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">java.awt.*</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="java"><span class="kd" style="font-weight: 600;">public</span> <span class="kd" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">ScrollPaneAutoScrollerWhenDragging</span> <span class="o" style="font-weight: 600;">{</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kd" style="font-weight: 600;">static</span> <span class="kd" style="font-weight: 600;">final</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">HiDPIHelper</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">scale</span><span class="o" style="font-weight: 600;">(</span><span class="mi" style="color: #099;">32</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kd" style="font-weight: 600;">static</span> <span class="kd" style="font-weight: 600;">final</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="no" style="color: #008080;">SCROLL_SLEEP_MILLIS</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">20</span><span class="o" style="font-weight: 600;">;</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kd" style="font-weight: 600;">static</span> <span class="kd" style="font-weight: 600;">final</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="no" style="color: #008080;">SCROLL_MAX_PIXELS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">HiDPIHelper</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">scale</span><span class="o" style="font-weight: 600;">(</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="nc" style="color: #458; font-weight: 600;">JScrollPane</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="n" style="color: #333;">mIsVertical</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">mContentSize</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">mViewportSize</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="nc" style="color: #458; font-weight: 600;">Thread</span> <span class="n" style="color: #333;">mScrollThread</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">float</span> <span class="n" style="color: #333;">mScrollSpeed</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="nf" style="color: #900; font-weight: 600;">ScrollPaneAutoScrollerWhenDragging</span><span class="o" style="font-weight: 600;">(</span><span class="nc" style="color: #458; font-weight: 600;">JScrollPane</span> <span class="n" style="color: #333;">scrollPane</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">boolean</span> <span class="n" style="color: #333;">isVertical</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="java"> <span class="n" style="color: #333;">mScrollPane</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">scrollPane</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="java"> <span class="n" style="color: #333;">mIsVertical</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">isVertical</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">autoScroll</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">Component</span> <span class="n" style="color: #333;">content</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">getView</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="java"> <span class="n" style="color: #333;">mContentSize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mIsVertical</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">content</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getHeight</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">content</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getWidth</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="java"> <span class="n" style="color: #333;">mViewportSize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mIsVertical</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">getHeight</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">getWidth</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">Point</span> <span class="n" style="color: #333;">mp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getMousePosition</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mp</span> <span class="o" style="font-weight: 600;">!=</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">mousePosition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mIsVertical</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">mp</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">y</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">mp</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">x</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">viewportPosition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mIsVertical</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">getY</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">getX</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">mouseToTop</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mousePosition</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">viewportPosition</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">mouseToBottom</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">viewportPosition</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">mViewportSize</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">mousePosition</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="java"> <span class="n" style="color: #333;">mScrollSpeed</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mouseToTop</span> <span class="o" style="font-weight: 600;"><</span> <span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="o" style="font-weight: 600;">-</span><span class="nc" style="color: #458; font-weight: 600;">Math</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">min</span><span class="o" style="font-weight: 600;">(</span><span class="mf" style="color: #099;">1.0f</span><span class="o" style="font-weight: 600;">,</span> <span class="o" style="font-weight: 600;">(</span><span class="kt" style="color: #458; font-weight: 600;">float</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">(</span><span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">mouseToTop</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span><span class="o" style="font-weight: 600;">)</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="java"> <span class="o" style="font-weight: 600;">:</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mouseToBottom</span> <span class="o" style="font-weight: 600;"><</span> <span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="nc" style="color: #458; font-weight: 600;">Math</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">min</span><span class="o" style="font-weight: 600;">(</span><span class="mf" style="color: #099;">1.0f</span><span class="o" style="font-weight: 600;">,</span> <span class="o" style="font-weight: 600;">(</span><span class="kt" style="color: #458; font-weight: 600;">float</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">(</span><span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">mouseToBottom</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="no" style="color: #008080;">SCROLL_AREA_HEIGHT</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">:</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mScrollSpeed</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="java"> <span class="n" style="color: #333;">mScrollThread</span> <span class="o" style="font-weight: 600;">=</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="java"> <span class="k" style="font-weight: 600;">else</span> <span class="nf" style="color: #900; font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mScrollThread</span> <span class="o" style="font-weight: 600;">==</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="java"> <span class="n" style="color: #333;">mScrollThread</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="nc" style="color: #458; font-weight: 600;">Thread</span><span class="o" style="font-weight: 600;">(()</span> <span class="o" style="font-weight: 600;">-></span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="java"> <span class="k" style="font-weight: 600;">while</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mScrollThread</span> <span class="o" style="font-weight: 600;">!=</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">Point</span> <span class="n" style="color: #333;">vp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">getViewPosition</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">minStep</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mIsVertical</span> <span class="o" style="font-weight: 600;">?</span> <span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">vp</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">y</span> <span class="o" style="font-weight: 600;">:</span> <span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">vp</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">x</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">maxStep</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">Math</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">max</span><span class="o" style="font-weight: 600;">(</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">mContentSize</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">mViewportSize</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">minStep</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">step</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">Math</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">max</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">minStep</span><span class="o" style="font-weight: 600;">,</span> <span class="nc" style="color: #458; font-weight: 600;">Math</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">min</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">maxStep</span><span class="o" style="font-weight: 600;">,</span> <span class="nc" style="color: #458; font-weight: 600;">Math</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">round</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mScrollSpeed</span> <span class="o" style="font-weight: 600;">*</span> <span class="no" style="color: #008080;">SCROLL_MAX_PIXELS</span><span class="o" style="font-weight: 600;">)));</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">step</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="java"> <span class="n" style="color: #333;">mScrollThread</span> <span class="o" style="font-weight: 600;">=</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="java"> <span class="k" style="font-weight: 600;">else</span> <span class="o" style="font-weight: 600;">{</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mIsVertical</span><span class="o" style="font-weight: 600;">)</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="java"> <span class="n" style="color: #333;">vp</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">y</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">step</span><span class="o" style="font-weight: 600;">;</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="java"> <span class="k" style="font-weight: 600;">else</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="java"> <span class="n" style="color: #333;">vp</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">x</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">step</span><span class="o" style="font-weight: 600;">;</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="java"> <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="java"><span class="c1" style="color: #998; font-style: italic;">//System.out.println("Thread:"+mScrollThread+" auto-scrolling:"+step);</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">SwingUtilities</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">invokeAndWait</span><span class="o" style="font-weight: 600;">(()</span> <span class="o" style="font-weight: 600;">-></span> <span class="n" style="color: #333;">mScrollPane</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getViewport</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">setViewPosition</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">vp</span><span class="o" style="font-weight: 600;">));</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">Thread</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">sleep</span><span class="o" style="font-weight: 600;">(</span><span class="no" style="color: #008080;">SCROLL_SLEEP_MILLIS</span><span class="o" style="font-weight: 600;">);</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="java"> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="nc" style="color: #458; font-weight: 600;">Exception</span> <span class="n" style="color: #333;">ie</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{}</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="java"> <span class="o" style="font-weight: 600;">});</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="java"> <span class="n" style="color: #333;">mScrollThread</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">start</span><span class="o" style="font-weight: 600;">();</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="java"></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="java"> <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">stopScrolling</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="java"> <span class="n" style="color: #333;">mScrollThread</span> <span class="o" style="font-weight: 600;">=</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span></pre>
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