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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/java-team/jalview">Debian Java Maintainers / jalview</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/12c64cee95a1de080d8ab4fce60be5768f331e54">12c64cee</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T16:58:50+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using version 4 in d/watch to remove files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/a468480355446861b3aab267fefa71968d426bda">a4684803</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:02:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.1.3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/8778e7b5f953ad161b21fa034664bbba2f2da4c1">8778e7b5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:03:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.1.3+dfsg'
Update to upstream version '2.11.1.3+dfsg'
with Debian dir c80e10fc3578965b69064981dfa73553cddd7e73</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/38c143b18ff3881735000fd44b77d906e8eb6621">38c143b1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:04:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depending on debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/bb3a5751bf69418bba863bdf7972992609c4274b">bb3a5751</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:06:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream has switched from ant to gradle
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/ab9c2da24371370581964cde418624958689667a">ab9c2da2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:16:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Correct invocation of org.jfree
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/1969b404be331ffed11a1b74aa7c02d014f51f15">1969b404</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:17:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Get rid of quaqua, which cannot be distributed on a non-Mac platform
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/a060eeae35a8529479ab770fad308f04c6c440c8">a060eeae</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:18:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Calling JSONObject correctly
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/2ae61807f9017af28983c9940eae7c86870536fa">2ae61807</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:19:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivating getdown, which is used to update software while running
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/f3a97e9db3d88f6ccf2bc647040370c0a59a1276">f3a97e9d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:20:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">classgraph is not needed for a Debian run
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/0a2f4dc43440d5a39e28998ebdeedf9ebba7c202">0a2f4dc4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:22:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivate a failing corner-case assertion in a test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/99421fab4e7c880a8dd849ea6bb7f74a57c320b7">99421fab</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:43:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating build-dependencies list and d/jalview.classpath
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/47b335674745937b888222c339412df3f15b5009">47b33567</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T17:46:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Switching from cdbs to dh
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/2a77c81a16c50383369c95b43e460a712d4c741a">2a77c81a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-19T18:55:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Making the build with Maven instead of upstream's gradle
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/8106b4f5ddde08e8b619fb0ac4db538c6d7b4edd">8106b4f5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T10:58:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating Vcs-* and Homepage fields in d/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/58a35c2470cb69c56d0bab6be262f8c41cf741e7">58a35c24</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T11:24:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove patch for Jmol and ant
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/b0adab8a72ea120a4c414de9118bbef4c705c3b8">b0adab8a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T11:26:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting myself as uploader, removing former uploader who orphaned jalview
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/db8b77b87645d9d3093a2440b6f61fc46c644b73">db8b77b8</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T11:26:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Calling dh_clean in its override in d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/939cca8adde971d4c8410d9972cede05686fd310">939cca8a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T17:17:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/9d9046d59afa65564f328fc274b6b81777c47fd0">9d9046d5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T22:50:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Providing a FreeDesktop entry instead of former menu entry
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/f8bed6dd512d121bc2418e724d04b86e707b14d9">f8bed6dd</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T22:51:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rules-Requires-Root: no, and acknowledging Standards version bump to 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/a04d9948e08415d1161e540a7abebae3f538d7f2">a04d9948</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-20T23:45:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Modifying the jar launcher by setting properly the jar manifest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/4f3569097043969f4d4c5c7d5ba3e51da5d8ada3">4f356909</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-21T14:00:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating manpage
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/dd65224aa9aee2bb5e4dc47772e527ccc6ec588f">dd65224a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-21T14:00:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding missing libjersey1-core-java dependency
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/fdc74aae6f20e5bf0ec87ca38d7c2d8254321aea">fdc74aae</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-21T14:33:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Including an upstream patch for a test in MemorySettingTest.java
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/f258265f62d31a6c46876a73042d9daae542e955">f258265f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-21T14:57:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding missing dependency libcommons-discovery-java
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/d85f1dc445a1feeeb61e44c4345b689aa4eb95ad">d85f1dc4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-21T22:08:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Putting the documentation in the resources tm embed it into the jar
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/5931eec3e7ca33eeb2af5fced032f34283c0edb6">5931eec3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-21T22:09:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Correcting mispellings in manpage
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/67d8496565013dc8f506ddb14302ff2df3fa3aab">67d84965</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-22T15:29:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using secure URI in d/watch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/7aca93e0adaf89965a6ef71b5352245d1923be5e">7aca93e0</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-22T15:30:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding metadata relative to Bug tracking and Repository
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/5000b090b62cc4accea5e9454df1cd1dbe4faace">5000b090</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-25T22:08:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivating Google Analytics, using a non-packaged and improperly licensed software
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/c492894f9bbc5d53878a0d717bcfb6e420c32515">c492894f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-26T21:55:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding a jar of libjaxws-java in the classpath for the web services
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/14ef8756107778ae78c68dacc0bbe26866006b48">14ef8756</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-11-27T22:50:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Acknowledging the two licences of files in src/jalview/ext/android
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/2a985843cd91cc4bed830cf2d4311a81ebb4621f">2a985843</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-12-15T23:06:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/8d73691b1903ddb16327ccab04c64f46e04df730">8d73691b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-12-15T23:06:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing files to reintegrate the examples/ folder in the source package
</pre>
</li>
</ul>
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<h5>The diff was not included because it is too large.</h5>
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