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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/java-team/jalview">Debian Java Maintainers / jalview</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/32f5bb5abc5ff9633f45e8d0e8940fcf28bcd08f">32f5bb5a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-01-30T21:51:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding Mime types in d/jalview.desktop and d/jalview-mime.xml
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/d69ca8432a274c65deb65a1506ca250c09be1750">d69ca843</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-04T21:48:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting the packaged example file as not executable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/1e81a08581b9f13746f7f627067393df659a5f2e">1e81a085</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-04T22:23:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing useless files with very long lines from source
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/beb694357ef3b4ea25e5882020ec902ec23ef00a">beb69435</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-04T22:23:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.1.3+dfsg2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/128799d8cc092c1a16444e65e46fbc8fefb90cda">128799d8</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-04T22:23:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.1.3+dfsg2'
Update to upstream version '2.11.1.3+dfsg2'
with Debian dir aa45f731f902c286eebe6ee3c13b28fb90c421a7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/62eb2c50efab910fd6d51f41525cb57b53062e43">62eb2c50</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-06T21:51:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Integrating the patch of upstream to control the way the web services are launched
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/c07fe595ad63d9df85915807ea5e3b7ca3eb42ed">c07fe595</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-06T21:53:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Forwarding patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/f55cce83b5453f787c75f4a82ab179dfeba30201">f55cce83</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-02-06T21:57:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Polishing changelog
</pre>
</li>
</ul>
<h4>16 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#66f33c98535145045d0eeeb6696131ce057078df">
<span class="new-file">
+
debian/jalview-mime.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#51d8fe6076eb02243794cb408699c3ea3a57aeae">
debian/jalview.desktop
</a>
</li>
<li class="file-stats">
<a href="#ce0dd3bd5b16c60cb13560854e9ae76422558cde">
debian/jalview.install
</a>
</li>
<li class="file-stats">
<a href="#55aee2348ee3bf420643d3317a2a3393f68c0724">
debian/manpages/jalview.1
</a>
</li>
<li class="file-stats">
<a href="#35bf47a84e63b0d47aaf12871cc59f1e1bc7c457">
debian/patches/change_package_jfree.patch
</a>
</li>
<li class="file-stats">
<a href="#5493673330b7dbf4892d3fb5e71bd3a2c413937a">
<span class="new-file">
+
debian/patches/controlling_web_services.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c330725d0853c2089a0583655b19caa4a307b18">
debian/patches/java8-compatibility.patch
</a>
</li>
<li class="file-stats">
<a href="#94b0dbbc77c578cde712fd217ad3fefd636ddbfc">
debian/patches/newer-mime4j-api.diff
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#35b38450aeb3958b20675966db5e89b72e385b08">
debian/patches/using_right_json_simple_package.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#fab20e862c7f81ce1dd22feff6c598a05980a8ff">
<span class="deleted-file">
−
examples/embeddedWJmol.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#fafbdabb3d425ac2fe8768f62640d3c6123b6060">
<span class="deleted-file">
−
examples/index.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#f1579fd1aa56c085ae47a3ba6b8e7105314582c0">
<span class="deleted-file">
−
examples/jmol/Jmol2.js
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">jalview (2.11.1.3+dfsg<span class="idiff left right">1</span>-1) UNRELEASED; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">jalview (2.11.1.3+dfsg<span class="idiff left right">2</span>-1) UNRELEASED; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Pierre Gruet ]</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> * New upstream version <span class="idiff left right">2.11.1.3+dfsg </span>(Closes: #849025)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * New upstream version (Closes: #849025)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * New uploader (Closes: #897294)</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Using version 4 in d/watch to remove files</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Using secure URI in d/watch</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Switching from cdbs to dh</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Depending on debhelper-compat 13</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> * Upstream has switched from ant to gradle</span>
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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> * Correcting invocation of org.jfree</span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> * Get rid of quaqua, which cannot be distributed on a non-Mac platform</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> * Calling JSONObject correctly</span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> * Deactivating getdown, which is used to update software while running</span>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Making the build with Maven instead of upstream's gradle</span>
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14
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Removing call to classgraph, not needed for a Debian run</span>
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15
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Updating build-dependencies list and d/jalview.classpath</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> * Switching from cdbs to dh</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> * Making the build with Maven instead of upstream's gradle</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Modifying the jar launcher by setting properly the jar manifest</span>
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18
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Updating Vcs-* and Homepage fields in d/control</span>
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19
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * Refreshing d/copyright</span>
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20
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Bump Standards version to 4.5.1:</span>
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21
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> - Providing a FreeDesktop entry instead of former menu entry</span>
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22
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> - Rules-Requires-Root: no</span>
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23
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> - Using the https form of the copyright-format URL</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> * Modifying the jar launcher by setting properly the jar manifest</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> * Putting the documentation in the resources tm embed it into the jar</span>
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26
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> * Updating manpage</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> * Deactivating Google Analytics, using a non-packaged and improperly licensed software</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Deactivating Google Analytics, using a non-packaged and improperly</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> licensed software</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> * Adding Mime types in d/jalview.desktop and d/jalview-mime.xml</span>
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28
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> * Adding autopkgtests</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> * Integrating the patch of upstream to control the way the web services are</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> launched</span>
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29
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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30
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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31
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> * Reintroduced debian/upstream/edam file</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,7 +37,7 @@ jalview (2.11.1.3+dfsg1-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> * d/rules: enforce LC_ALL=C.UTF-8 to cope with UTF-8 characters</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> -- Pierre Gruet <pgtdebian@free.fr> <span class="idiff left right">Tue, 15 Dec 2020 23:02:10</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> -- Pierre Gruet <pgtdebian@free.fr> <span class="idiff left right">Sat, 06 Feb 2021 21:53:09</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">jalview (2.7.dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,14 +7,18 @@ Files-Excluded: jalview/j11lib</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> jalview/j8digestonly</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> jalview/examples/biojson-doc</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> jalview/examples/javascript</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> jalview/examples/jmol</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> jalview/examples/example_biojs.html</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> jalview/examples/embeddedWJmol.html</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> jalview/examples/index.html</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> jalview/utils</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> jalview/getdown</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Source: The tarball is made by deleting the jars in the j8* and j11* dirs,</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> the utils directory as we will rely on the Debian-packaged tools, and</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> some folders in the examples directory, of which copyright is a bit</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> confusing. getdown is a tool to update the software at runtime, which</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> we don't want to enable.</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> confusing. We also delete some files with very long lines in the</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> examples/ folder. getdown is a tool to update the software at runtime,</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> which we don't want to enable.</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Copyright: 2014-2020 The Jalview Authors</span>
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<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#66f33c98535145045d0eeeb6696131ce057078df"><strong>debian/jalview-mime.xml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="xml"><span class="cp" style="color: #999; font-weight: 600;"><?xml version="1.0" encoding="UTF-8"?></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="xml"><span class="nt" style="color: #000080;"><mime-info</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.freedesktop.org/standards/shared-mime-info"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="xml"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-jalview+xml+zip"</span><span class="nt" style="color: #000080;">></span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Jalview File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.jvp"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="xml"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"chemical/x-cif"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>CIF File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.cif"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"40"</span><span class="nt" style="color: #000080;">/></span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="xml"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"chemical/x-mmcif"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>mmCIF File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.mcif"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"40"</span><span class="nt" style="color: #000080;">/></span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.mmcif"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"40"</span><span class="nt" style="color: #000080;">/></span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="xml"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"chemical/x-pdb"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>PDB File<span class="nt" style="color: #000080;"></comment></span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.pdb"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"40"</span><span class="nt" style="color: #000080;">/></span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.ent"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"40"</span><span class="nt" style="color: #000080;">/></span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="xml"></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-amsa+txt"</span><span class="nt" style="color: #000080;">></span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>AMSA File<span class="nt" style="color: #000080;"></comment></span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.amsa"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="xml"></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-jalview-annotations+text"</span><span class="nt" style="color: #000080;">></span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Jalview Annotations File<span class="nt" style="color: #000080;"></comment></span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.annotations"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.jvannotations"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="xml"></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-jalview-biojson+json"</span><span class="nt" style="color: #000080;">></span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>BioJSON File<span class="nt" style="color: #000080;"></comment></span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.biojson"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="xml"></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-blc+txt"</span><span class="nt" style="color: #000080;">></span></span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>BLC File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.blc"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="xml"></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-clustal+txt"</span><span class="nt" style="color: #000080;">></span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Clustal File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.aln"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="xml"></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-fasta+txt"</span><span class="nt" style="color: #000080;">></span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Fasta File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.fa"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.fasta"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="xml"></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-jalview-features+text"</span><span class="nt" style="color: #000080;">></span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Jalview Features File<span class="nt" style="color: #000080;"></comment></span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.features"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.jvfeatures"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="xml"></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-gff2+txt"</span><span class="nt" style="color: #000080;">></span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Generic Features Format v2 File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.gff2"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="xml"></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-gff3+txt"</span><span class="nt" style="color: #000080;">></span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Generic Features Format v3 File<span class="nt" style="color: #000080;"></comment></span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.gff3"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="xml"></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-jalview-jnet+text"</span><span class="nt" style="color: #000080;">></span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>JnetFile File<span class="nt" style="color: #000080;"></comment></span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.concise"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.jnet"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="xml"></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-msf+txt"</span><span class="nt" style="color: #000080;">></span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>MSF File<span class="nt" style="color: #000080;"></comment></span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.msf"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="xml"></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-pfam+txt"</span><span class="nt" style="color: #000080;">></span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>PFAM File<span class="nt" style="color: #000080;"></comment></span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.pfam"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="xml"></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-phylip+txt"</span><span class="nt" style="color: #000080;">></span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>PHYLIP File<span class="nt" style="color: #000080;"></comment></span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.phy"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="xml"></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-pileup+txt"</span><span class="nt" style="color: #000080;">></span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>PileUp File<span class="nt" style="color: #000080;"></comment></span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.pileup"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="xml"></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-pir+txt"</span><span class="nt" style="color: #000080;">></span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>PIR File<span class="nt" style="color: #000080;"></comment></span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.pir"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="xml"></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/rnaml+xml"</span><span class="nt" style="color: #000080;">></span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>RNAML File<span class="nt" style="color: #000080;"></comment></span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.rnaml"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="xml"></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-jalview-scorematrix+text"</span><span class="nt" style="color: #000080;">></span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Substitution Matrix File<span class="nt" style="color: #000080;"></comment></span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.mat"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"100"</span><span class="nt" style="color: #000080;">/></span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="xml"></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="xml"> <span class="nt" style="color: #000080;"><mime-type</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"application/x-stockholm+txt"</span><span class="nt" style="color: #000080;">></span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="xml"> <span class="nt" style="color: #000080;"><comment></span>Stockholm File<span class="nt" style="color: #000080;"></comment></span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.sto"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="xml"> <span class="nt" style="color: #000080;"><glob</span> <span class="na" style="color: #008080;">pattern=</span><span class="s" style="color: #d14;">"*.stk"</span> <span class="na" style="color: #008080;">weight=</span><span class="s" style="color: #d14;">"90"</span><span class="nt" style="color: #000080;">/></span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="xml"> <span class="nt" style="color: #000080;"></mime-type></span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="xml"></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="xml"><span class="nt" style="color: #000080;"></mime-info></span></span></pre>
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<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#51d8fe6076eb02243794cb408699c3ea3a57aeae"><strong>debian/jalview.desktop</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">[Desktop Entry]</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Type=Application</span>
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3
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Version=1.1</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Type=Application</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Name=Jalview</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Comment=Multiple <span class="idiff left right">alignment e</span>ditor</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Comment=Multiple <span class="idiff left right">Sequence Alignment E</span>ditor</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Icon=jalview-icon</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">TryExec=jalview</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Exec=jalview <span class="idiff left right">%U</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Exec=jalview <span class="idiff left right">-open %u</span></span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Terminal=false</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Categories=Science;Biology</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Keywords=alignment;sequence</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Categories=Science;Biology;</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Keywords=alignment;sequence;</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MimeType=application/x-jalview+xml+zip;chemical/x-cif;chemical/x-mmcif;chemical/x-pdb;application/x-amsa+txt;application/x-jalview-annotations+text;application/x-jalview-biojson+json;application/x-blc+txt;application/x-clustal+txt;application/x-fasta+txt;application/x-jalview-features+text;application/x-gff2+txt;application/x-gff3+txt;application/x-jalview-jnet+text;application/x-msf+txt;application/x-pfam+txt;application/x-phylip+txt;application/x-pileup+txt;application/x-pir+txt;application/rnaml+xml;application/x-jalview-scorematrix+text;application/x-stockholm+txt</span></pre>
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<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#ce0dd3bd5b16c60cb13560854e9ae76422558cde"><strong>debian/jalview.install</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">wrappers</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">jalview</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">bin</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">jalview</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">desktop</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">applications</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">jalview</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">mime</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">xml</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">mime</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">packages</span></span></pre>
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<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#55aee2348ee3bf420643d3317a2a3393f68c0724"><strong>debian/manpages/jalview.1</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">.\" Copyright 2011 by Vincent Fourmond</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.\" Can be modified and distributed under the terms of the GNU General</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">.\" public license, version 3 or any later version at your option.</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">.TH JALVIEW 1 "<span class="idiff left right">21-11-2020</span>"</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">.TH JALVIEW 1 "<span class="idiff left right">06-02-2021</span>"</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">jalview \- Multiple alignment editor</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -97,6 +97,9 @@ Turn off questionnaire check.</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext">.BR \-nonews</span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext">Turn off check for Jalview news.</span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext">.TP</span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext">.BR \-nohtmltemplates</span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext">Disable the automatic download of templates in the Github repository.</span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext">.TP</span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext">.BR \-sortbytree " OR " \-nosortbytree</span>
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101
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext">Enable or disable sorting of the given alignment by the given tree</span>
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102
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext">.TP</span>
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<li id="35bf47a84e63b0d47aaf12871cc59f1e1bc7c457">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#35bf47a84e63b0d47aaf12871cc59f1e1bc7c457"><strong>debian/patches/change_package_jfree.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Description: change the package for org.jfree, which is not the correct one</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Author: Pierre Gruet <pgtdebian@free.fr></span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">no</span></span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">jalview-dev@jalview.org</span></span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2020-11-12</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/src/jalview/gui/SequenceRenderer.java</span>
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<li id="5493673330b7dbf4892d3fb5e71bd3a2c413937a">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#5493673330b7dbf4892d3fb5e71bd3a2c413937a"><strong>debian/patches/controlling_web_services.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Do not run web services if not allowed by the user/administrator</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Jim Procter <J.Procter@dundee.ac.uk></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Reviewed-by: Pierre Gruet <pgtdebian@free.fr></span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Last-Update: 2021-02-06</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- a/src/jalview/bin/Cache.java</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/bin/Cache.java</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -167,6 +167,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> * <li>FOLLOW_SELECTIONS (true) Controls whether a new alignment view should</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> * respond to selections made in other alignments containing the same sequences.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> * </li></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * <li>SHOW_JWS2_SERVICES (true) when set to false, jalview will not</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * auto-discover JABAWS services</li></span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> * <li>JWS2HOSTURLS comma-separated list of URLs to try for JABAWS services</li></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> * <li>SHOW_WSDISCOVERY_ERRORS (true) Controls if the web service URL discovery</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> * warning dialog box is displayed.</li></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -194,7 +196,13 @@</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> * <li>CHIMERA_PATH specify full path to Chimera program (if non-standard)</li></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> * <li>ID_ORG_HOSTURL location of jalview service providing identifiers.org urls</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> * </li></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- * </span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * <li>NONEWS - when set disables Jalview News from automatically appearing</li></span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * <li>NOHTMLTEMPLATES - when set, the</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * https://github.com/jalview/exporter-templates/tree/master/biojs repository is</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * not downloaded automatically</li></span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * <li>NOIDENTIFIERSSERVICE - when set, jalview won't automatically download</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * available URL linkouts via www.jalview.org/services/identifiers</li></span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * <li></span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> * </ul></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> * Deprecated settings:</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> * <ul></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/bin/Jalview.java</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/bin/Jalview.java</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="p">@@ -366,12 +366,17 @@</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> System.err.println("CMD [-noquestionnaire] executed successfully!");</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (!aparser.contains("nonews"))</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (!aparser.contains("nonews")</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ || Cache.getProperty("NONEWS") == null)</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> {</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"> desktop.checkForNews();</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> }</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> </span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- BioJsHTMLOutput.updateBioJS();</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (!aparser.contains("nohtmltemplates")</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ || Cache.getProperty("NOHTMLTEMPLATES") == null)</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BioJsHTMLOutput.updateBioJS();</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> }</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> </span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> String file = null, data = null;</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/gui/AlignFrame.java</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/gui/AlignFrame.java</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="p">@@ -4174,9 +4174,15 @@</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> webService.add(me.webServiceNoServices);</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"> // TODO: move into separate menu builder class.</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- boolean new_sspred = false;</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Cache.getDefault("SHOW_JWS2_SERVICES", true))</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> {</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // logic for 2.11.1.4 is</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // always look to see if there is a discover. if there isn't</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // we can't show any Jws2 services</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // if there are services available, show them - regardless of</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // the 'show JWS2 preference'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // if the discoverer is running then say so</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // otherwise offer to trigger discovery if 'show JWS2' is not</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // enabled</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> Jws2Discoverer jws2servs = Jws2Discoverer.getDiscoverer();</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> if (jws2servs != null)</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"> {</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"><span class="p">@@ -4193,8 +4199,8 @@</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> }</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> }</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"> }</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"> }</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"> if (jws2servs.isRunning())</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"> {</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"> JMenuItem tm = new JMenuItem(</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"><span class="p">@@ -4202,6 +4208,26 @@</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"> tm.setEnabled(false);</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"> webService.add(tm);</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"> }</span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ else if (!Cache.getDefault("SHOW_JWS2_SERVICES", true))</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ JMenuItem enableJws2 = new JMenuItem(</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "Discover Web Services");</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ enableJws2.setToolTipText(</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "Select to start JABA Web Service discovery (or enable option in Web Service preferences)");</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ enableJws2.setEnabled(true);</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ enableJws2.addActionListener(new ActionListener()</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @Override</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ public void actionPerformed(ActionEvent e)</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // start service discoverer, but ignore preference</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Desktop.instance.startServiceDiscovery(false,</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ true);</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ });</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ webService.add(enableJws2);</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"> }</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"> }</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"> build_urlServiceMenu(me.webService);</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/gui/BlogReader.java</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/gui/BlogReader.java</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"><span class="p">@@ -272,13 +272,16 @@</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> </span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"> initItems(chan);</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"> updating = false;</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- boolean setvisible = checkForNew(chan, true);</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (setvisible)</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (!Cache.getDefault("NONEWS", false))</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="diff"> {</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ boolean setvisible = checkForNew(chan, true);</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (setvisible)</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="diff"> </span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Cache.log.debug("Will show jalview news automatically");</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- showNews();</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Cache.log.debug("Will show jalview news automatically");</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ showNews();</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"> }</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="diff"> Cache.log.debug("Completed construction of reader.");</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="diff"> </span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/gui/Desktop.java</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/gui/Desktop.java</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="diff"><span class="p">@@ -559,26 +559,27 @@</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"> </span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"> public void getIdentifiersOrgData()</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- // Thread off the identifiers fetcher</span></span>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new Thread(new Runnable()</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @Override</span></span>
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- public void run()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Cache.getProperty("NOIDENTIFIERSSERVICE") == null)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {// Thread off the identifiers fetcher</span></span>
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<td class="diff-line-num new new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new Thread(new Runnable()</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Cache.log.debug("Downloading data from identifiers.org");</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- UrlDownloadClient client = new UrlDownloadClient();</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- try</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- client.download(IdOrgSettings.getUrl(),</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- IdOrgSettings.getDownloadLocation());</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- } catch (IOException e)</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @Override</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ public void run()</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="diff"> {</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Cache.log.debug("Exception downloading identifiers.org data"</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- + e.getMessage());</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Cache.log.debug("Downloading data from identifiers.org");</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ try</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ UrlDownloadClient.download(IdOrgSettings.getUrl(),</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ IdOrgSettings.getDownloadLocation());</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ } catch (IOException e)</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Cache.log.debug("Exception downloading identifiers.org data"</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ + e.getMessage());</span></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="diff"> }</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }).start();</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ;</span></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }).start();</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ;</span></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="diff"> }</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="diff"> </span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="diff"> @Override</span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="diff"><span class="p">@@ -2571,13 +2572,36 @@</span></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="diff"> this.inBatchMode = inBatchMode;</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="diff"> }</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="diff"> </span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ /**</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * start service discovery and wait till it is done</span></span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ */</span></span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="diff"> public void startServiceDiscovery()</span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="diff"> {</span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="diff"> startServiceDiscovery(false);</span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="diff"> }</span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="diff"> </span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ /**</span></span>
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * start service discovery threads - blocking or non-blocking</span></span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *</span></span>
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * @param blocking</span></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ */</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="diff"> public void startServiceDiscovery(boolean blocking)</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="diff"> {</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ startServiceDiscovery(blocking,false);</span></span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ /**</span></span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * start service discovery threads</span></span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *</span></span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * @param blocking</span></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * - false means call returns immediately</span></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * @param ignore_SHOW_JWS2_SERVICES_preference</span></span>
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * - when true JABA services are discovered regardless of user's JWS2</span></span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * discovery preference setting</span></span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ */</span></span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ public void startServiceDiscovery(boolean blocking,</span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ boolean ignore_SHOW_JWS2_SERVICES_preference)</span></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {</span></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="diff"> boolean alive = true;</span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="diff"> Thread t0 = null, t1 = null, t2 = null;</span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="diff"> // JAL-940 - JALVIEW 1 services are now being EOLed as of JABA 2.1 release</span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="diff"><span class="p">@@ -2595,7 +2619,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="diff"> (t0 = new Thread(discoverer)).start();</span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Cache.getDefault("SHOW_JWS2_SERVICES", true))</span></span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (ignore_SHOW_JWS2_SERVICES_preference</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ || Cache.getDefault("SHOW_JWS2_SERVICES", true))</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="diff"> t2 = jalview.ws.jws2.Jws2Discoverer.getDiscoverer()</span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="diff"> .startDiscoverer(changeSupport);</span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/ws/utils/UrlDownloadClient.java</span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/ws/utils/UrlDownloadClient.java</span></span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="diff"><span class="p">@@ -33,11 +33,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="diff"> public class UrlDownloadClient</span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- public UrlDownloadClient()</span></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {</span></span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="diff"> /**</span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="diff"> * Download and save a file from a URL</span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="diff"> * </span></pre>
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<li id="9c330725d0853c2089a0583655b19caa4a307b18">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#9c330725d0853c2089a0583655b19caa4a307b18"><strong>debian/patches/java8-compatibility.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Description: Fix the compilation errors with Java 8</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Author: Emmanuel Bourg <ebourg@apache.org></span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">no</span></span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">jalview-dev@jalview.org</span></span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/ws/rest/InputType.java</span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/ws/rest/InputType.java</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="p">@@ -42,7 +42,6 @@</span></span>
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<li id="94b0dbbc77c578cde712fd217ad3fefd636ddbfc">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#94b0dbbc77c578cde712fd217ad3fefd636ddbfc"><strong>debian/patches/newer-mime4j-api.diff</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Description: Patch to use the latest version of Apache Mime4J</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Author: Emmanuel Bourg <ebourg@apache.org></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">no</span></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">jalview-dev@jalview.org</span></span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="p">@@ -29,9 +29,9 @@</span></span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,3 +7,4 @@ deactivate_getdown.patch</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">deactivate_classgraph.patch</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">correct_last_assertion_MemorySettingTest.patch</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">deactivate_google_analytics.patch</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">controlling_web_services.patch</span></pre>
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<li id="35b38450aeb3958b20675966db5e89b72e385b08">
<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#35b38450aeb3958b20675966db5e89b72e385b08"><strong>debian/patches/using_right_json_simple_package.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@ Description: JSONObject was wrongly invoked</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"> Moreover it is called on an AlignmentPojo object, I added the getAppSettings</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> method in the call to get a HashMap<String, Object>.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">Author: Pierre Gruet <pgtdebian@free.fr></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">no</span></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Forwarded: <span class="idiff left right">jalview-dev@jalview.org</span></span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="p">Last-Update: 2020-11-15</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff">--- a/src/jalview/io/JSONFile.java</span>
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<a href="https://salsa.debian.org/java-team/jalview/-/compare/659217a76d4392eec5eac5ebc26b350b6e7b8b6b...f55cce83b5453f787c75f4a82ab179dfeba30201#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,3 +34,8 @@ override_dh_auto_install:</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> jh_installlibs</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> jh_manifest</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> jh_depends</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">override_dh_fixperms:</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> # Setting the packaged example file as not executable.</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> chmod a-x debian/$(DEB_SOURCE)/usr/share/doc/jalview/examples/uniref50.fa</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> dh_fixperms</span></pre>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="html"><span class="cp" style="color: #999; font-weight: 600;"><!DOCTYPE html PUBLIC "-//W3C//DTD HTML+RDFa 1.1//EN"></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Jalview - A Sequence Alignment Editor and Viewer (2.11.1.3)</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Copyright (C) 2020 The Jalview Authors</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * </span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * This file is part of Jalview.</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * </span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Jalview is free software: you can redistribute it and/or</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * modify it under the terms of the GNU General Public License </span></span>
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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * as published by the Free Software Foundation, either version 3</span></span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * of the License, or (at your option) any later version.</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * </span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Jalview is distributed in the hope that it will be useful, but </span></span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * WITHOUT ANY WARRANTY; without even the implied warranty </span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * of MERCHANTABILITY or FITNESS FOR A PARTICULAR </span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * PURPOSE. See the GNU General Public License for more details.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * </span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * You should have received a copy of the GNU General Public License</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * along with Jalview. If not, see <http://www.gnu.org/licenses/>.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * The Jalview Authors are detailed in the 'AUTHORS' file.</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> --></span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="html"> <span class="nt" style="color: #000080;"><html</span> <span class="na" style="color: #008080;">lang=</span><span class="s" style="color: #d14;">"en"</span> <span class="na" style="color: #008080;">dir=</span><span class="s" style="color: #d14;">"ltr"</span> <span class="na" style="color: #008080;">version=</span><span class="s" style="color: #d14;">"HTML+RDFa 1.1"</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:content=</span><span class="s" style="color: #d14;">"http://purl.org/rss/1.0/modules/content/"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:dc=</span><span class="s" style="color: #d14;">"http://purl.org/dc/terms/"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:foaf=</span><span class="s" style="color: #d14;">"http://xmlns.com/foaf/0.1/"</span> <span class="na" style="color: #008080;">xmlns:og=</span><span class="s" style="color: #d14;">"http://ogp.me/ns#"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:rdfs=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/01/rdf-schema#"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:sioc=</span><span class="s" style="color: #d14;">"http://rdfs.org/sioc/ns#"</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:sioct=</span><span class="s" style="color: #d14;">"http://rdfs.org/sioc/types#"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:skos=</span><span class="s" style="color: #d14;">"http://www.w3.org/2004/02/skos/core#"</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:xsd=</span><span class="s" style="color: #d14;">"http://www.w3.org/2001/XMLSchema#"</span><span class="nt" style="color: #000080;">></span></span>
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31
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="html"><span class="o" style="font-weight: 600;"><!--</span><span class="c1" style="color: #998; font-style: italic;">//--></span><span class="o" style="font-weight: 600;"><!</span><span class="p">[</span><span class="nx">CDATA</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">//></span><span class="o" style="font-weight: 600;"><!--</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="html"> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">cookie</span> <span class="o" style="font-weight: 600;">=</span> <span class="dl">'</span><span class="s1" style="color: #d14;">adaptive_image=</span><span class="dl">'</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">Math</span><span class="p">.</span><span class="nx">max</span><span class="p">(</span><span class="nx">screen</span><span class="p">.</span><span class="nx">width</span><span class="p">,</span> <span class="nx">screen</span><span class="p">.</span><span class="nx">height</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/all/modules/lightbox2/js/lightbox.js?1434966756"</span><span class="nt" style="color: #000080;">></script></span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_gaq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nx">_gaq</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">[];</span></span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="html"> <span class="nx">_gaq</span><span class="p">.</span><span class="nx">push</span><span class="p">([</span> <span class="dl">"</span><span class="s2" style="color: #d14;">_setAccount</span><span class="dl">"</span><span class="p">,</span> <span class="dl">"</span><span class="s2" style="color: #d14;">UA-9060947-1</span><span class="dl">"</span> <span class="p">]);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="html"> <span class="nx">_gaq</span><span class="p">.</span><span class="nx">push</span><span class="p">([</span> <span class="dl">"</span><span class="s2" style="color: #d14;">_trackPageview</span><span class="dl">"</span> <span class="p">]);</span></span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="html"> <span class="p">(</span><span class="kd" style="font-weight: 600;">function</span><span class="p">()</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">ga</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">createElement</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">script</span><span class="dl">"</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="html"> <span class="nx">ga</span><span class="p">.</span><span class="nx">type</span> <span class="o" style="font-weight: 600;">=</span> <span class="dl">"</span><span class="s2" style="color: #d14;">text/javascript</span><span class="dl">"</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="html"> <span class="nx">ga</span><span class="p">.</span><span class="k" style="font-weight: 600;">async</span> <span class="o" style="font-weight: 600;">=</span> <span class="kc" style="font-weight: 600;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="html"> <span class="nx">ga</span><span class="p">.</span><span class="nx">src</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">https:</span><span class="dl">"</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">location</span><span class="p">.</span><span class="nx">protocol</span> <span class="p">?</span> <span class="dl">"</span><span class="s2" style="color: #d14;">https://ssl</span><span class="dl">"</span></span>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="html"> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">http://www</span><span class="dl">"</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="html"> <span class="o" style="font-weight: 600;">+</span> <span class="dl">"</span><span class="s2" style="color: #d14;">.google-analytics.com/ga.js</span><span class="dl">"</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">getElementsByTagName</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">script</span><span class="dl">"</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="html"> <span class="nx">s</span><span class="p">.</span><span class="nx">parentNode</span><span class="p">.</span><span class="nx">insertBefore</span><span class="p">(</span><span class="nx">ga</span><span class="p">,</span> <span class="nx">s</span><span class="p">);</span></span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="html"> <span class="p">})();</span></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="html"> <span class="c1" style="color: #998; font-style: italic;">//--></span><span class="o" style="font-weight: 600;"><!</span><span class="p">]]</span><span class="o" style="font-weight: 600;">></span></span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="html"><span class="nt" style="color: #000080;"></script></span></span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_tnUY-Xr0uSK3E1mkrZ6ON7OmxH4PiVjShebnFJ8E-9c.js"</span><span class="nt" style="color: #000080;">></script></span></span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_43n5FBy8pZxQHxPXkf-sQF7ZiacVZke14b0VlvSA554.js"</span><span class="nt" style="color: #000080;">></script></span></span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="html"></span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span><span class="nt" style="color: #000080;">></span></span>
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118
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="html"><span class="nx">jQuery</span><span class="p">.</span><span class="nx">extend</span><span class="p">(</span><span class="nx">Drupal</span><span class="p">.</span><span class="nx">settings</span><span class="p">,</span> <span class="p">{</span><span class="dl">"</span><span class="s2" style="color: #d14;">basePath</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">pathPrefix</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">ajaxPageState</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">theme</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">jalview</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">theme_token</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">wip-WGy4TPV1wdu4Sdq6IXFdriaYrLsrzHuYbaCEpD8</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">js</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">0</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery_update</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/replace</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/1.7</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.min.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">misc</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.once.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">misc</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/drupal.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/lightbox2</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/lightbox.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.bgiframe.min.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.hoverIntent.minified.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_navigation</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_menu.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_navigation</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_navigation.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/google_analytics</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/googleanalytics.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">1</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jalview</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jalview_ga_event_tracking.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.formalize.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega-mediaqueries.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">css</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.base.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.menus.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.messages.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.theme.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/adaptive_image</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/css</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/adaptive-image.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date_api</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date_popup</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/datepicker.1.7.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/field</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/theme</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/field.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/node</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/node.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/poll</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/poll.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/search</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/search.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span 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class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/ctools</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/css</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/ctools.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span 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class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/alpha</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/css</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/grid</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/alpha_default</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/wide</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/alpha-default-wide-12.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">}},</span><span class="dl">"</span><span class="s2" style="color: #d14;">lightbox2</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">rtl</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">file_path</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/(</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">w</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">w</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/)public:</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">default_image</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/lightbox2</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/images</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/brokenimage.jpg</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">border_size</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">10</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">font_color</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">000</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">box_color</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">fff</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">top_position</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">overlay_opacity</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">0.8</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">overlay_color</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">000</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_close_click</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">resize_sequence</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">resize_speed</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">100</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">fade_in_speed</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">100</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slide_down_speed</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">100</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">use_alt_layout</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_resize</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_zoom</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">force_show_nav</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">show_caption</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">loop_items</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">node_link_text</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">View Image Details</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">node_link_target</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">image_count</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">Image !current of !total</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">video_count</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">Video !current of !total</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">page_count</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">Page !current of !total</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">lite_press_x_close</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">press </span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003Ca href=</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022#</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022 onclick=</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022hideLightbox(); return FALSE;</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003E</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003Ckbd</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003Ex</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003C</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/kbd</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003E</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003C</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/a</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003E to close</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">download_link_text</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_login</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_contact</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_close</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">c x 27</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_previous</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">p 37</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_next</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">n 39</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_zoom</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">z</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_play_pause</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">32</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">display_image_size</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">original</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">image_node_sizes</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">()</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightbox_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightbox_group_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_slideshow_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightframe_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightframe_group_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">custom_class_handler</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">custom_trigger_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_for_gallery_lists</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_for_acidfree_gallery_lists</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_acidfree_videos</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slideshow_interval</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">5000</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slideshow_automatic_start</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slideshow_automatic_exit</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">show_play_pause</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">pause_on_next_click</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">pause_on_previous_click</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">loop_slides</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">iframe_width</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">600</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">iframe_height</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">400</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">iframe_border</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_video</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">nice_menus_options</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">delay</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">800</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">speed</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">fast</span><span class="dl">"</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">mobile_navigation</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">breakpoint</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 740px) and (min-device-width: 740px), (max-device-width: 800px) and (min-width: 740px) and (orientation:landscape)</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuSelector</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">.primary-nav</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuPlugin</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">accordion</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">showEffect</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">expand_down</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">showItems</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">tabHandler</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuWidth</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">100</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">specialClasses</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">mainPageSelector</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">#page</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">useMask</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuLabel</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">expandActive</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">googleanalytics</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackOutbound</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackMailto</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackDownload</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackDownloadExtensions</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">7z|aac|arc|arj|asf|asx|avi|bin|csv|doc|exe|flv|gif|gz|gzip|hqx|jar|jpe?g|js|mp(2|3|4|e?g)|mov(ie)?|msi|msp|pdf|phps|png|ppt|qtm?|ra(m|r)?|sea|sit|tar|tgz|torrent|txt|wav|wma|wmv|wpd|xls|xml|z|zip</span><span class="dl">"</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">omega</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">layouts</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">primary</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">normal</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">order</span><span class="dl">"</span><span class="p">:[</span><span class="dl">"</span><span class="s2" style="color: #d14;">narrow</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">normal</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">wide</span><span class="dl">"</span><span class="p">],</span><span class="dl">"</span><span class="s2" style="color: #d14;">queries</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">narrow</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 740px) and (min-device-width: 740px), (max-device-width: 800px) and (min-width: 740px) and (orientation:landscape)</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">normal</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 980px) and (min-device-width: 980px), all and (max-device-width: 1024px) and (min-width: 1024px) and (orientation:landscape)</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">wide</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 1220px)</span><span class="dl">"</span><span class="p">}}}});</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="html"><span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"header"</span><span class="nt" style="color: #000080;">></div></span></span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="html"><span class="nt" style="color: #000080;"><section</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"section-content"</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"section section-content"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"zone-content-wrapper"</span></span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"zone-wrapper zone-content-wrapper clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="html"></span>
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145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"zone-content"</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"zone zone-content clearfix container-12"</span><span class="nt" style="color: #000080;">></span></span>
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146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="html"> <span class="nt" style="color: #000080;"><</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">!—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="na" style="color: #008080;">side</span> <span class="na" style="color: #008080;">bar</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="html"> <span class="nt" style="color: #000080;"><aside</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"grid-3 region region-sidebar-first"</span></span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"region-sidebar-first"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"region-inner region-sidebar-first-inner"</span><span class="nt" style="color: #000080;">></span></span>
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150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="html"> <span class="nt" style="color: #000080;"><section</span></span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block block-menu-block block-1 block-menu-block-1 odd"</span></span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"block-menu-block-1"</span><span class="nt" style="color: #000080;">></span></span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block-inner clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="html"> <span class="nt" style="color: #000080;"><h2</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block-title"</span><span class="nt" style="color: #000080;">></span> </span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="html"> <span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">href=</span><span class="s" style="color: #d14;">"/development"</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"development active-trail"</span><span class="nt" style="color: #000080;">></span>Development<span class="nt" style="color: #000080;"></a></span></span>
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156
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="html"> <span class="nt" style="color: #000080;"></h2></span></span>
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157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"content clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"menu-block-wrapper menu-block-1 menu-name-main-menu parent-mlid-0 menu-level-2"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"block-menu-block-2"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="html"> <span class="nt" style="color: #000080;"><</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">!</span><span class="na" style="color: #008080;">-</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">end</span> <span class="na" style="color: #008080;">of</span> <span class="na" style="color: #008080;">sidebar</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"grid-9 region region-content"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"region-content"</span><span class="nt" style="color: #000080;">></span></span>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"region-inner region-content-inner"</span><span class="nt" style="color: #000080;">></span></span>
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186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="html"> <span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"main-content"</span><span class="nt" style="color: #000080;">></a></span></span>
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187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span></span>
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188
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block block-system block-main block-system-main odd block-without-title"</span></span>
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189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"block-system-main"</span><span class="nt" style="color: #000080;">></span></span>
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190
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block-inner clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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191
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"content clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="html"> <span class="nt" style="color: #000080;"><article</span> <span class="na" style="color: #008080;">about=</span><span class="s" style="color: #d14;">"/About"</span> <span class="na" style="color: #008080;">typeof=</span><span class="s" style="color: #d14;">"sioc:Item foaf:Document"</span></span>
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"node node-basic-page node-published node-not-promoted node-not-sticky author-admin odd clearfix"</span></span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"node-basic-page-18"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"content clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span></span>
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197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"field field-name-body field-type-text-with-summary field-label-hidden"</span><span class="nt" style="color: #000080;">></span></span>
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198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"field-items"</span><span class="nt" style="color: #000080;">></span></span>
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199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"field-item even"</span> <span class="na" style="color: #008080;">property=</span><span class="s" style="color: #d14;">"content:encoded"</span><span class="nt" style="color: #000080;">></span></span>
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200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"content"</span><span class="nt" style="color: #000080;">></span></span>
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201
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202
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203
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="html"><span class="nt" style="color: #000080;"><div></span></span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="html"> </span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="html"></span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">language=</span><span class="s" style="color: #d14;">"JavaScript"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="html"><span class="c1" style="color: #998; font-style: italic;">// instead of this, we use a custom JmolApplet spec</span></span>
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="html"><span class="c1" style="color: #998; font-style: italic;">// jmolInitialize('jmol');</span></span>
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="html"><span class="nx">jmolInitialize</span><span class="p">(</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">JmolApplet-14.6.4_2016.10.26.jar</span><span class="dl">"</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="html"><span class="nt" style="color: #000080;"></script></span></span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="html"><span class="nt" style="color: #000080;"><script></span></span>
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">loglevel</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="html"> <span class="kd" style="font-weight: 600;">function</span> <span class="nx">dbg</span><span class="p">(</span><span class="nx">lvl</span><span class="p">,</span><span class="nx">string</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="html"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="nx">_console</span> <span class="o" style="font-weight: 600;">&&</span> <span class="nx">lvl</span><span class="o" style="font-weight: 600;"><=</span><span class="nx">loglevel</span><span class="p">)</span> <span class="p">{</span><span class="nx">_console</span><span class="p">.</span><span class="nx">value</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nx">string</span> <span class="o" style="font-weight: 600;">+</span> <span class="dl">"</span><span class="se" style="color: #d14;">\n</span><span class="dl">"</span><span class="p">;}</span></span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="html"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_lastTime</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">new</span> <span class="nb" style="color: #0086b3;">Date</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_path</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_datazip</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_zip</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">alignA</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">alignB</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">featuresA</span><span class="p">;</span></span>
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228
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">featuresB</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">pairs</span><span class="p">;</span></span>
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230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">atompairs</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
231
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">structdata</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">jmolview</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
233
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">jvstructassoc</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
234
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">modeltofiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="nb" style="color: #0086b3;">Array</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
235
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="html"></span>
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<td class="diff-line-num old old_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
236
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="html"> <span class="kd" style="font-weight: 600;">function</span> <span class="nx">lJvA</span><span class="p">()</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
237
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="html"> <span class="nx">jvfollower</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">getElementById</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">jvA</span><span class="dl">"</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
238
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="html"> <span class="nx">setConsole</span><span class="p">(</span><span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">getElementById</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">stdout</span><span class="dl">"</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
239
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="html"> <span class="nx">linkJvJmol</span><span class="p">(</span><span class="nx">jvfollower</span><span class="p">,</span> <span class="dl">"</span><span class="s2" style="color: #d14;">jmolView</span><span class="dl">"</span><span class="p">,</span> <span class="nx">modeltofiles</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
240
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="html"> <span class="p">};</span></span>
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<td class="diff-line-num old old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
241
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="html"></span>
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<td class="diff-line-num old old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
242
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_jvA</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">new</span> <span class="nb" style="color: #0086b3;">Object</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
243
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="html"> <span class="nx">_jvA</span><span class="p">.</span><span class="nx">attributes</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
244
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="html"> <span class="na" style="color: #008080;">code</span> <span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">jalview.bin.JalviewLite</span><span class="dl">'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
245
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="html"> <span class="na" style="color: #008080;">archive</span> <span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar</span><span class="dl">'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
246
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="html"> <span class="na" style="color: #008080;">width</span> <span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">500</span><span class="dl">'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
247
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="html"> <span class="na" style="color: #008080;">height</span> <span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">350</span><span class="dl">'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
248
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="html"> <span class="na" style="color: #008080;">mayscript</span> <span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">True</span><span class="dl">'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
249
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="html"> <span class="na" style="color: #008080;">scriptable</span><span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">True</span><span class="dl">'</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
250
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="html"> <span class="na" style="color: #008080;">id</span> <span class="p">:</span> <span class="dl">'</span><span class="s1" style="color: #d14;">jvA</span><span class="dl">'</span></span>
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<td class="diff-line-num old old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
251
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="html"> <span class="p">};</span></span>
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<td class="diff-line-num old old_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="html"> <span class="nx">_jvA</span><span class="p">.</span><span class="nx">parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
253
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="html"> <span class="na" style="color: #008080;">java_arguments</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">-Xmx256m</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
254
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="html"> <span class="na" style="color: #008080;">externalstructureviewer</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">true</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
255
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="html"> <span class="na" style="color: #008080;">oninit</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">lJvA</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
256
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="html"> <span class="na" style="color: #008080;">automaticScrolling</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">true</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
257
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="html"><span class="c1" style="color: #998; font-style: italic;">// </span><span class="o" style="font-weight: 600;"><!--</span> <span class="na" style="color: #008080;">defaultColour</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">Strand Propensity</span><span class="dl">"</span><span class="p">,</span> <span class="o" style="font-weight: 600;">--></span></span>
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<td class="diff-line-num old old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
258
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="html"> <span class="na" style="color: #008080;">file</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">uniref50_mz.fa</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
259
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="html"> </span>
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<td class="diff-line-num old old_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
260
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="html"> <span class="na" style="color: #008080;">relaxedidmatch</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">true</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
261
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="html"> <span class="na" style="color: #008080;">debug</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">true</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
262
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="html"> <span class="na" style="color: #008080;">wrap</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">false</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
263
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="html"> <span class="c1" style="color: #998; font-style: italic;">// separator : "^",</span></span>
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<td class="diff-line-num old old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
264
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="html"> <span class="na" style="color: #008080;">showAnnotation</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">false</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
265
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="html"> <span class="na" style="color: #008080;">embedded</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">true</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
266
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="html"> <span class="na" style="color: #008080;">showFullId</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">false</span><span class="dl">"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
267
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="html"> <span class="na" style="color: #008080;">RGB</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">F2F2FF</span><span class="dl">"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
268
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="html"> <span class="na" style="color: #008080;">linkLabel_1</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">EMBL-EBI Search</span><span class="dl">"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
269
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="html"> <span class="na" style="color: #008080;">linkUrl_1</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$</span><span class="dl">"</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
270
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="html"> <span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
271
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="html"> <span class="na" style="color: #008080;">linkLabel_2</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">Uniprot</span><span class="dl">"</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
272
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="html"> <span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="html"> <span class="na" style="color: #008080;">linkUrl_2</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">http://www.uniprot.org/uniprot/$SEQUENCE_ID$</span><span class="dl">"</span><span class="p">,</span></span>
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274
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="html"> <span class="na" style="color: #008080;">APPLICATION_URL</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">http://www.jalview.org/services/launchApp</span><span class="dl">"</span><span class="p">,</span></span>
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275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="html"> <span class="na" style="color: #008080;">PDBfile</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">1gaq.txt FER1_MAIZE</span><span class="dl">"</span><span class="p">,</span></span>
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276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="html"> <span class="na" style="color: #008080;">permissions</span> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">sandbox</span><span class="dl">"</span></span>
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277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="html"> <span class="p">};</span></span>
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278
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="html"> <span class="nx">jmolSetCallback</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">hoverCallback</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">_jmolhover</span><span class="dl">"</span><span class="p">);</span></span>
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279
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="html"> <span class="nx">jmolSetCallback</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">pickCallback</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">_jmolpick</span><span class="dl">"</span><span class="p">);</span></span>
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280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="html"> <span class="nx">modeltofiles</span><span class="o" style="font-weight: 600;">+=</span><span class="dl">"</span><span class="s2" style="color: #d14;">1gaq.txt</span><span class="dl">"</span><span class="p">;</span></span>
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281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="html"><span class="nt" style="color: #000080;"></script></span> </span>
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282
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="html"><span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">style=</span><span class="s" style="color: #d14;">"width: 100%"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="html"><span class="nt" style="color: #000080;"></div></span></span>
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286
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"><!-- content template start --></span></span>
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287
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="html"><span class="nt" style="color: #000080;"><h2></span>Structure and Alignment<span class="nt" style="color: #000080;"></h2></span></span>
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288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="html"><span class="nt" style="color: #000080;"><p></span>This demo shows how JalviewLite and Jmol can be integrated with the JalviewLite javascript library.<span class="nt" style="color: #000080;"></p></span></span>
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289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="html"></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="html"></span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="html"><span class="nt" style="color: #000080;"><div></span></span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="html"> <span class="nt" style="color: #000080;"><script></span></span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="html"> <span class="nx">jmolApplet</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">500x500</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">zap; load FILE '1gaq.txt'; frame 0; background black; select all; wireframe off; spacefill off; cartoons; restrict; center *; set selectionhalos true;set hoverDelay 0.001; select 0</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">jmolView</span><span class="dl">"</span><span class="p">);</span></span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="html"> <span class="nt" style="color: #000080;"></script></span></span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="html"><span class="nt" style="color: #000080;"><div></span></span>
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<td class="diff-line-num old old_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="html"><span class="nt" style="color: #000080;"><applet</span></span>
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<td class="diff-line-num old old_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="html"> <span class="na" style="color: #008080;">code=</span><span class="s" style="color: #d14;">"jalview.bin.JalviewLite"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"500"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"350"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"jvA"</span> <span class="na" style="color: #008080;">mayscript=</span><span class="s" style="color: #d14;">"mayscript"</span> <span class="na" style="color: #008080;">archive=</span><span class="s" style="color: #d14;">"jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="diff-line-num old old_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"permissions"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"sandbox"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
300
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"java_arguments"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"-Xmx256m"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
301
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"externalstructureviewer"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"oninit"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"lJvA"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"automaticScrolling"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
304
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"file"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"uniref50_mz.fa"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"relaxedidmatch"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"debug"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"wrap"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"false"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"showAnnotation"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"false"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"embedded"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"showFullId"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"false"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
311
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"RGB"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"F2F2FF"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
312
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"linkLabel_1"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"EMBL-EBI Search"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
313
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"linkUrl_1"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"linkLabel_2"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"Uniprot"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="diff-line-num old old_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"linkUrl_2"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"http://www.uniprot.org/uniprot/$SEQUENCE_ID$"</span><span class="nt" style="color: #000080;">/></span></span>
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"APPLICATION_URL"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"http://www.jalview.org/services/launchApp"</span><span class="nt" style="color: #000080;">/></span></span>
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="html"><span class="nt" style="color: #000080;"><param</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"PDBfile"</span> <span class="na" style="color: #008080;">value=</span><span class="s" style="color: #d14;">"1gaq.txt FER1_MAIZE"</span><span class="nt" style="color: #000080;">/></span></span>
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="html"><span class="nt" style="color: #000080;"></applet></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Jalview - A Sequence Alignment Editor and Viewer (2.11.1.3)</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Copyright (C) 2020 The Jalview Authors</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * This file is part of Jalview.</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Jalview is free software: you can redistribute it and/or</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * modify it under the terms of the GNU General Public License </span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * as published by the Free Software Foundation, either version 3</span></span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * of the License, or (at your option) any later version.</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * </span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * Jalview is distributed in the hope that it will be useful, but </span></span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * WITHOUT ANY WARRANTY; without even the implied warranty </span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * of MERCHANTABILITY or FITNESS FOR A PARTICULAR </span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * PURPOSE. See the GNU General Public License for more details.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * </span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * You should have received a copy of the GNU General Public License</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * along with Jalview. If not, see <http://www.gnu.org/licenses/>.</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> * The Jalview Authors are detailed in the 'AUTHORS' file.</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="html"><span class="c" style="color: #998; font-style: italic;"> --></span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="html"> <span class="nt" style="color: #000080;"><html</span> <span class="na" style="color: #008080;">lang=</span><span class="s" style="color: #d14;">"en"</span> <span class="na" style="color: #008080;">dir=</span><span class="s" style="color: #d14;">"ltr"</span> <span class="na" style="color: #008080;">version=</span><span class="s" style="color: #d14;">"HTML+RDFa 1.1"</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:content=</span><span class="s" style="color: #d14;">"http://purl.org/rss/1.0/modules/content/"</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:dc=</span><span class="s" style="color: #d14;">"http://purl.org/dc/terms/"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:foaf=</span><span class="s" style="color: #d14;">"http://xmlns.com/foaf/0.1/"</span> <span class="na" style="color: #008080;">xmlns:og=</span><span class="s" style="color: #d14;">"http://ogp.me/ns#"</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:rdfs=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/01/rdf-schema#"</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:sioc=</span><span class="s" style="color: #d14;">"http://rdfs.org/sioc/ns#"</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:sioct=</span><span class="s" style="color: #d14;">"http://rdfs.org/sioc/types#"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:skos=</span><span class="s" style="color: #d14;">"http://www.w3.org/2004/02/skos/core#"</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="html"> <span class="na" style="color: #008080;">xmlns:xsd=</span><span class="s" style="color: #d14;">"http://www.w3.org/2001/XMLSchema#"</span><span class="nt" style="color: #000080;">></span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="html"><span class="nt" style="color: #000080;"><head</span> <span class="na" style="color: #008080;">profile=</span><span class="s" style="color: #d14;">"http://www.w3.org/1999/xhtml/vocab"</span><span class="nt" style="color: #000080;">></span></span>
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32
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="html"><span class="o" style="font-weight: 600;"><!--</span><span class="c1" style="color: #998; font-style: italic;">//--></span><span class="o" style="font-weight: 600;"><!</span><span class="p">[</span><span class="nx">CDATA</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">//></span><span class="o" style="font-weight: 600;"><!--</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="html"> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">cookie</span> <span class="o" style="font-weight: 600;">=</span> <span class="dl">'</span><span class="s1" style="color: #d14;">adaptive_image=</span><span class="dl">'</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">Math</span><span class="p">.</span><span class="nx">max</span><span class="p">(</span><span class="nx">screen</span><span class="p">.</span><span class="nx">width</span><span class="p">,</span> <span class="nx">screen</span><span class="p">.</span><span class="nx">height</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/all/modules/lightbox2/js/lightbox.js?1434966756"</span><span class="nt" style="color: #000080;">></script></span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/all/modules/mobile_navigation/js/mobile_menu.js?nqc8th"</span><span class="nt" style="color: #000080;">></script></span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="html"><span class="o" style="font-weight: 600;"><!--</span><span class="c1" style="color: #998; font-style: italic;">//--></span><span class="o" style="font-weight: 600;"><!</span><span class="p">[</span><span class="nx">CDATA</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">//></span><span class="o" style="font-weight: 600;"><!--</span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">_gaq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nx">_gaq</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">[];</span></span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="html"> <span class="nx">_gaq</span><span class="p">.</span><span class="nx">push</span><span class="p">([</span> <span class="dl">"</span><span class="s2" style="color: #d14;">_setAccount</span><span class="dl">"</span><span class="p">,</span> <span class="dl">"</span><span class="s2" style="color: #d14;">UA-9060947-1</span><span class="dl">"</span> <span class="p">]);</span></span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="html"> <span class="nx">_gaq</span><span class="p">.</span><span class="nx">push</span><span class="p">([</span> <span class="dl">"</span><span class="s2" style="color: #d14;">_trackPageview</span><span class="dl">"</span> <span class="p">]);</span></span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="html"> <span class="p">(</span><span class="kd" style="font-weight: 600;">function</span><span class="p">()</span> <span class="p">{</span></span>
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101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">ga</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">createElement</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">script</span><span class="dl">"</span><span class="p">);</span></span>
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102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="html"> <span class="nx">ga</span><span class="p">.</span><span class="nx">type</span> <span class="o" style="font-weight: 600;">=</span> <span class="dl">"</span><span class="s2" style="color: #d14;">text/javascript</span><span class="dl">"</span><span class="p">;</span></span>
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103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="html"> <span class="nx">ga</span><span class="p">.</span><span class="k" style="font-weight: 600;">async</span> <span class="o" style="font-weight: 600;">=</span> <span class="kc" style="font-weight: 600;">true</span><span class="p">;</span></span>
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104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="html"> <span class="nx">ga</span><span class="p">.</span><span class="nx">src</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">https:</span><span class="dl">"</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">location</span><span class="p">.</span><span class="nx">protocol</span> <span class="p">?</span> <span class="dl">"</span><span class="s2" style="color: #d14;">https://ssl</span><span class="dl">"</span></span>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="html"> <span class="p">:</span> <span class="dl">"</span><span class="s2" style="color: #d14;">http://www</span><span class="dl">"</span><span class="p">)</span></span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="html"> <span class="o" style="font-weight: 600;">+</span> <span class="dl">"</span><span class="s2" style="color: #d14;">.google-analytics.com/ga.js</span><span class="dl">"</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="html"> <span class="kd" style="font-weight: 600;">var</span> <span class="nx">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">document</span><span class="p">.</span><span class="nx">getElementsByTagName</span><span class="p">(</span><span class="dl">"</span><span class="s2" style="color: #d14;">script</span><span class="dl">"</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="html"> <span class="nx">s</span><span class="p">.</span><span class="nx">parentNode</span><span class="p">.</span><span class="nx">insertBefore</span><span class="p">(</span><span class="nx">ga</span><span class="p">,</span> <span class="nx">s</span><span class="p">);</span></span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="html"> <span class="p">})();</span></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="html"> <span class="c1" style="color: #998; font-style: italic;">//--></span><span class="o" style="font-weight: 600;"><!</span><span class="p">]]</span><span class="o" style="font-weight: 600;">></span></span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="html"><span class="nt" style="color: #000080;"></script></span></span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_tnUY-Xr0uSK3E1mkrZ6ON7OmxH4PiVjShebnFJ8E-9c.js"</span><span class="nt" style="color: #000080;">></script></span></span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span></span>
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115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="html"> <span class="na" style="color: #008080;">src=</span><span class="s" style="color: #d14;">"http://www.jalview.org/sites/jalview.aegir-prod-6.lifesci.dundee.ac.uk/files/js/js_43n5FBy8pZxQHxPXkf-sQF7ZiacVZke14b0VlvSA554.js"</span><span class="nt" style="color: #000080;">></script></span></span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="html"></span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="html"><span class="nt" style="color: #000080;"><script </span><span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"text/javascript"</span><span class="nt" style="color: #000080;">></span></span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="html"><span class="o" style="font-weight: 600;"><!--</span><span class="c1" style="color: #998; font-style: italic;">//--></span><span class="o" style="font-weight: 600;"><!</span><span class="p">[</span><span class="nx">CDATA</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">//></span><span class="o" style="font-weight: 600;"><!--</span></span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="html"><span class="nx">jQuery</span><span class="p">.</span><span class="nx">extend</span><span class="p">(</span><span class="nx">Drupal</span><span class="p">.</span><span class="nx">settings</span><span class="p">,</span> <span class="p">{</span><span class="dl">"</span><span class="s2" style="color: #d14;">basePath</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">pathPrefix</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">ajaxPageState</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">theme</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">jalview</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">theme_token</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">wip-WGy4TPV1wdu4Sdq6IXFdriaYrLsrzHuYbaCEpD8</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">js</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">0</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery_update</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/replace</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/1.7</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.min.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">misc</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.once.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">misc</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/drupal.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/lightbox2</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/lightbox.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.bgiframe.min.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/superfish</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.hoverIntent.minified.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/nice_menus.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_navigation</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_menu.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_navigation</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/mobile_navigation.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/google_analytics</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/googleanalytics.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">1</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jalview</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jalview_ga_event_tracking.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/jquery.formalize.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/themes</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/js</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/omega-mediaqueries.js</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">css</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.base.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.menus.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.messages.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/system.theme.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/adaptive_image</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/css</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/adaptive-image.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date_api</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/date_popup</span><span class="se" style="color: 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class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/ctools</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/css</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/ctools.css</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span 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class="s2" style="color: #d14;">lightbox2</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">rtl</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">file_path</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/(</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">w</span><span class="se" style="color: #d14;">\\</span><span class="s2" style="color: #d14;">w</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/)public:</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">default_image</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/sites</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/all</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/modules</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/lightbox2</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/images</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/brokenimage.jpg</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">border_size</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">10</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">font_color</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">000</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">box_color</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">fff</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">top_position</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">overlay_opacity</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">0.8</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">overlay_color</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">000</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_close_click</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">resize_sequence</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">resize_speed</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">100</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">fade_in_speed</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">100</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slide_down_speed</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">100</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">use_alt_layout</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_resize</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_zoom</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">force_show_nav</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">show_caption</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">loop_items</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">node_link_text</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">View Image Details</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">node_link_target</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">image_count</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">Image !current of !total</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">video_count</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">Video !current of !total</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">page_count</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">Page !current of !total</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">lite_press_x_close</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">press </span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003Ca href=</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022#</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022 onclick=</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022hideLightbox(); return FALSE;</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u0022</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003E</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003Ckbd</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003Ex</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003C</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/kbd</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003E</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003C</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">/a</span><span class="se" style="color: #d14;">\</span><span class="s2" style="color: #d14;">u003E to close</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">download_link_text</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_login</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_contact</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_close</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">c x 27</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_previous</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">p 37</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_next</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">n 39</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_zoom</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">z</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">keys_play_pause</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">32</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">display_image_size</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">original</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">image_node_sizes</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">()</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightbox_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightbox_group_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_slideshow_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightframe_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trigger_lightframe_group_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">custom_class_handler</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">custom_trigger_classes</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_for_gallery_lists</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">disable_for_acidfree_gallery_lists</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_acidfree_videos</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slideshow_interval</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">5000</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slideshow_automatic_start</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">slideshow_automatic_exit</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">show_play_pause</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">pause_on_next_click</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">pause_on_previous_click</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">true</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">loop_slides</span><span class="dl">"</span><span class="p">:</span><span class="kc" style="font-weight: 600;">false</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">iframe_width</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">600</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">iframe_height</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">400</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">iframe_border</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">enable_video</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">nice_menus_options</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">delay</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">800</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">speed</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">fast</span><span class="dl">"</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">mobile_navigation</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">breakpoint</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 740px) and (min-device-width: 740px), (max-device-width: 800px) and (min-width: 740px) and (orientation:landscape)</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuSelector</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">.primary-nav</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuPlugin</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">accordion</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">showEffect</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">expand_down</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">showItems</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">tabHandler</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuWidth</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">100</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">specialClasses</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">mainPageSelector</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">#page</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">useMask</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">menuLabel</span><span class="dl">"</span><span class="p">:</span><span class="dl">""</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">expandActive</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">googleanalytics</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackOutbound</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackMailto</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackDownload</span><span class="dl">"</span><span class="p">:</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">trackDownloadExtensions</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">7z|aac|arc|arj|asf|asx|avi|bin|csv|doc|exe|flv|gif|gz|gzip|hqx|jar|jpe?g|js|mp(2|3|4|e?g)|mov(ie)?|msi|msp|pdf|phps|png|ppt|qtm?|ra(m|r)?|sea|sit|tar|tgz|torrent|txt|wav|wma|wmv|wpd|xls|xml|z|zip</span><span class="dl">"</span><span class="p">},</span><span class="dl">"</span><span class="s2" style="color: #d14;">omega</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">layouts</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">primary</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">normal</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">order</span><span class="dl">"</span><span class="p">:[</span><span class="dl">"</span><span class="s2" style="color: #d14;">narrow</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">normal</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">wide</span><span class="dl">"</span><span class="p">],</span><span class="dl">"</span><span class="s2" style="color: #d14;">queries</span><span class="dl">"</span><span class="p">:{</span><span class="dl">"</span><span class="s2" style="color: #d14;">narrow</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 740px) and (min-device-width: 740px), (max-device-width: 800px) and (min-width: 740px) and (orientation:landscape)</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">normal</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 980px) and (min-device-width: 980px), all and (max-device-width: 1024px) and (min-width: 1024px) and (orientation:landscape)</span><span class="dl">"</span><span class="p">,</span><span class="dl">"</span><span class="s2" style="color: #d14;">wide</span><span class="dl">"</span><span class="p">:</span><span class="dl">"</span><span class="s2" style="color: #d14;">all and (min-width: 1220px)</span><span class="dl">"</span><span class="p">}}}});</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="html"><span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"header"</span><span class="nt" style="color: #000080;">></div></span></span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="html"><span class="nt" style="color: #000080;"><section</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"section-content"</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"section section-content"</span><span class="nt" style="color: #000080;">></span></span>
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142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"zone-content-wrapper"</span></span>
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143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"zone-wrapper zone-content-wrapper clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="html"></span>
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145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"zone-content"</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"zone zone-content clearfix container-12"</span><span class="nt" style="color: #000080;">></span></span>
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146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="html"> <span class="nt" style="color: #000080;"><</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">!—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="na" style="color: #008080;">side</span> <span class="na" style="color: #008080;">bar</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="html"> <span class="nt" style="color: #000080;"><aside</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"grid-3 region region-sidebar-first"</span></span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"region-sidebar-first"</span><span class="nt" style="color: #000080;">></span></span>
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149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"region-inner region-sidebar-first-inner"</span><span class="nt" style="color: #000080;">></span></span>
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150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="html"> <span class="nt" style="color: #000080;"><section</span></span>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block block-menu-block block-1 block-menu-block-1 odd"</span></span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"block-menu-block-1"</span><span class="nt" style="color: #000080;">></span></span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block-inner clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"content clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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155
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"menu-block-wrapper menu-block-1 menu-name-main-menu parent-mlid-0 menu-level-2"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"nav"</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"nav"</span><span class="nt" style="color: #000080;">></span>nav<span class="nt" style="color: #000080;"></div></span></span>
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157
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158
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159
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block block-menu-block block-2 block-menu-block-2 even"</span></span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"block-menu-block-2"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="html"> <span class="nt" style="color: #000080;"><h2</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block-title"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="html"> <span class="nt" style="color: #000080;"><</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">!</span><span class="na" style="color: #008080;">-</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">-</span> <span class="na" style="color: #008080;">end</span> <span class="na" style="color: #008080;">of</span> <span class="na" style="color: #008080;">sidebar</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">—</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"grid-9 region region-content"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"region-content"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"region-inner region-content-inner"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="html"> <span class="nt" style="color: #000080;"><a</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"main-content"</span><span class="nt" style="color: #000080;">></a></span></span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span></span>
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block block-system block-main block-system-main odd block-without-title"</span></span>
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"block-system-main"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"block-inner clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"content clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="html"> <span class="nt" style="color: #000080;"><article</span> <span class="na" style="color: #008080;">about=</span><span class="s" style="color: #d14;">"/About"</span> <span class="na" style="color: #008080;">typeof=</span><span class="s" style="color: #d14;">"sioc:Item foaf:Document"</span></span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"node node-basic-page node-published node-not-promoted node-not-sticky author-admin odd clearfix"</span></span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="html"> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"node-basic-page-18"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"content clearfix"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span></span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="html"> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"field field-name-body field-type-text-with-summary field-label-hidden"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"field-items"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">class=</span><span class="s" style="color: #d14;">"field-item even"</span> <span class="na" style="color: #008080;">property=</span><span class="s" style="color: #d14;">"content:encoded"</span><span class="nt" style="color: #000080;">></span></span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="html"> <span class="nt" style="color: #000080;"><div</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"content"</span><span class="nt" style="color: #000080;">></div></span> </span>
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