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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/java-team/jalview">Debian Java Maintainers / jalview</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/java-team/jalview/-/commit/ef7d23524027150c8423e18ac5c9a36214fa0bcb">ef7d2352</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2021-02-27T21:57:49+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Having d/control and d/templates reviewed by debian-l10n-english, thanks to Justin B. Rye
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#07e7728b33e7a74d91a57204f1c81ee2e1c682cd">
debian/po/templates.pot
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<a href="#20cc0cd1beac5f600949f8e6637cb3c2c0b18b46">
debian/templates
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/java-team/jalview/-/commit/ef7d23524027150c8423e18ac5c9a36214fa0bcb#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,9 +52,9 @@ Depends: default-jre,</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext">Suggests: clustalw, kalign, t-coffee</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">Description: multiple alignment editor</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> JalView is a Java alignment editor that can work<span class="idiff left right"> with sequence</span></span>
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<td class="old_line diff-line-num old" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> alignment produced by programs implementing alignment<span class="idiff left right"> algorithms</span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> such as clustalw, kalign and t-coffee.</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> JalView is a Java <span class="idiff left right">DNA, RNA and protein sequence </span>alignment editor that can work</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"><span class="idiff left"> with sequence</span> alignment<span class="idiff right">s</span> produced by programs implementing alignment</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"><span class="idiff left right"> algorithms</span> such as clustalw, kalign and t-coffee.</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> It has lots of features, is actively developed, and will compare</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> advantageously to BioEdit, while being free as in free speech<span class="idiff left right"> </span>!</span></pre>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> advantageously to BioEdit, while being free as in free speech!</span></pre>
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<br>
</li>
<li id="07e7728b33e7a74d91a57204f1c81ee2e1c682cd">
<a href="https://salsa.debian.org/java-team/jalview/-/commit/ef7d23524027150c8423e18ac5c9a36214fa0bcb#07e7728b33e7a74d91a57204f1c81ee2e1c682cd"><strong>debian/po/templates.pot</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@ msgid ""</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">"Project-Id-Version: jalview\n"</span>
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<td class="old_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">"Report-Msgid-Bugs-To: jalview@packages.debian.org\n"</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">"POT-Creation-Date: 2021-02-27 <span class="idiff left right">14:16</span>+0100\n"</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">"POT-Creation-Date: 2021-02-27 <span class="idiff left right">21:34</span>+0100\n"</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"</span>
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<td class="old_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">"Language-Team: LANGUAGE <LL@li.org>\n"</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +23,7 @@ msgstr ""</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">#. downloaded from identifiers.org to easily access some biological databases.</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">#. A bit more info at identifiers.org if needed.</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">#: ../templates:1001</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">msgid "A<span class="idiff left">llow</span> download<span class="idiff">ing</span> identifiers <span class="idiff">automatically </span>from <span class="idiff right">www.</span>jalview.org?"</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">msgid "A<span class="idiff left right">utomatically</span> download identifiers from jalview.org?"</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">#. Type: boolean</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,23 +54,24 @@ msgstr ""</td>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">#. Translators: "identifiers" or "accessions" are short tokens that may be</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext">#. downloaded from identifiers.org to easily access some biological databases.</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">#. A bit more info at identifiers.org if needed.</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext">#: ../templates:1001</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext">msgid ""</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext">"Users can only override this preference from their own configuration file."</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">#. Type: boolean</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">#: ../templates:1001 ../templates:5001</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">msgid "Individual users can override this setting in their configuration file."</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext">#. Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext">#: ../templates:2001</span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext">msgid "A<span class="idiff left">llow a</span>utomatic display <span class="idiff">of </span>news from <span class="idiff">the J</span>alview<span class="idiff right"> website</span>?"</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">msgid "Automatic<span class="idiff left">ally</span> display news from <span class="idiff">j</span>alview<span class="idiff right">.org</span>?"</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext">#. Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext">#: ../templates:2001</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext">msgid ""</span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext">"<span class="idiff left">Users will be</span> automatically show<span class="idiff">n</span> updates from <span class="idiff right"> </span>https://www.jalview.org/"</span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext">"<span class="idiff left right">feeds/</span>desktop/rss in a popup window."</span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext">"<span class="idiff left">Jalview can</span> automatically show updates from https://www.jalview.org/<span class="idiff right">feeds/</span>"</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext">"desktop/rss in a popup window."</span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext">#. Type: boolean</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -93,7 +94,7 @@ msgstr ""</td>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext">#. Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext">#: ../templates:3001</span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext">msgid "A<span class="idiff left right">llow prompts from Jalview's website about a user questionnaire</span>?"</span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">msgid "A<span class="idiff left right">utomatically check for questionnaires from jalview.org</span>?"</span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext">#. Type: boolean</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,7 +132,7 @@ msgstr ""</td>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext">#. The sentence beginning with "Otherwise" means the users can do this discovery</span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext">#. from the menu of the software if the administrator has disabled it.</span>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext">#: ../templates:4001</span>
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134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext">msgid "A<span class="idiff left">llow discovery of alignment and analysis w</span>eb <span class="idiff">s</span>ervices<span class="idiff right"> at startup</span>?"</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext">msgid "A<span class="idiff left">utomatically discover JABA W</span>eb <span class="idiff right">S</span>ervices?"</span>
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135
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext">msgstr ""</span>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"></span>
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137
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext">#. Type: boolean</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -160,8 +161,8 @@ msgstr ""</td>
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160
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext">#: ../templates:4001</span>
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161
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext">msgid ""</span>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext">"Jalview can automatically query the public (or any other configured) JABAWS "</span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext">"services on start<span class="idiff left right">-</span>up. Otherwise, users will need to initiate discovery with "</span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext">"<span class="idiff left right">a </span>menu option."</span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext">"services on startup. Otherwise, users will need to initiate discovery with <span class="idiff left right">a </span>"</span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext">"menu option."</span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext">#. Type: boolean</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -181,21 +182,21 @@ msgstr ""</td>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext">#. Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext">#: ../templates:5001</span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext">msgid "A<span class="idiff left">llow</span> download<span class="idiff">ing</span> HTML templates <span class="idiff right">automatically </span>from Github?"</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">msgid "A<span class="idiff left right">utomatically</span> download HTML templates from Github?"</span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext">msgstr ""</span>
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<td class="old_line diff-line-num" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"></span>
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext">#. Type: boolean</span>
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188
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext">#: ../templates:5001</span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext">msgid ""</span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext">"Jalview automatically download<span class="idiff left">s</span> the latest <span class="idiff">'</span>BioJS<span class="idiff">'</span> HTML export template <span class="idiff right">from </span>"</span>
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext">"https://github.com/jalview/exporter-templates on startup."</span>
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext">"Jalview <span class="idiff left">cam </span>automatically download the latest <span class="idiff">\"</span>BioJS<span class="idiff right">\"</span> HTML export template "</span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext">"<span class="idiff left right">from </span>https://github.com/jalview/exporter-templates on startup."</span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext">msgstr ""</span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext">#. Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext">#. Description</span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext">#: ../templates:5001</span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext">msgid ""</span>
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="plaintext">"<span class="idiff left">Users can only enabl</span>e or <span class="idiff right">disable this feature from their own configuratio</span>n "</span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext">"<span class="idiff left right">file</span>."</span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext">"<span class="idiff left">This is a convenienc</span>e <span class="idiff">f</span>or <span class="idiff right">users but can be deactivated as it causes a</span>n "</span>
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext">"<span class="idiff left right">automatic ping to Github</span>."</span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext">msgstr ""</span></pre>
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<li id="20cc0cd1beac5f600949f8e6637cb3c2c0b18b46">
<a href="https://salsa.debian.org/java-team/jalview/-/commit/ef7d23524027150c8423e18ac5c9a36214fa0bcb#20cc0cd1beac5f600949f8e6637cb3c2c0b18b46"><strong>debian/templates</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Default: true</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"># Translators: "identifiers" or "accessions" are short tokens that may be</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"># downloaded from identifiers.org to easily access some biological databases.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"># A bit more info at identifiers.org if needed.</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">_Description: A<span class="idiff left">llow</span> download<span class="idiff">ing</span> identifiers <span class="idiff">automatically </span>from <span class="idiff right">www.</span>jalview.org?</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">_Description: A<span class="idiff left right">utomatically</span> download identifiers from jalview.org?</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> Jalview can automatically download a list of identifiers.org URL templates </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> for viewing accessions from various biological databases.</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> .</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,13 +12,13 @@ _Description: Allow downloading identifiers automatically from www.jalview.org?</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> automatic ping to www.jalview.org/services/identifiers, which records usage</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> statistics.</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left">U</span>sers can <span class="idiff">only </span>override this <span class="idiff">preference from</span> their <span class="idiff right">own </span>configuration file.</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <span class="idiff left">Individual u</span>sers can override this <span class="idiff right">setting in</span> their configuration file.</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Template: jalview/news</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Default: true</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">_Description: A<span class="idiff left">llow a</span>utomatic display <span class="idiff">of </span>news from <span class="idiff">the J</span>alview<span class="idiff right"> website</span>?</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> <span class="idiff left">Users will be</span> automatically show<span class="idiff">n</span> updates from<span class="idiff right"> </span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">_Description: Automatic<span class="idiff left">ally</span> display news from <span class="idiff">j</span>alview<span class="idiff right">.org</span>?</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">Jalview can</span> automatically show updates from</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> https://www.jalview.org/feeds/desktop/rss in a popup window. </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> The news feed is informative to users but its retrieval pings www.jalview.org,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +31,7 @@ _Description: Allow automatic display of news from the Jalview website?</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Template: jalview/questionnaire</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Default: true</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext">_Description: A<span class="idiff left right">llow prompts from Jalview's website about a user questionnaire</span>?</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">_Description: A<span class="idiff left right">utomatically check for questionnaires from jalview.org</span>?</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> User questionnaires are posted from time to time on www.jalview.org, and</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> Jalview can automatically query the site to look for them on startup, in order</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> to prompt users to complete them.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,12 +52,12 @@ Default: true</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"># available.</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"># The sentence beginning with "Otherwise" means the users can do this discovery</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"># from the menu of the software if the administrator has disabled it.</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext">_Description: A<span class="idiff left">llow discovery of alignment and analysis w</span>eb <span class="idiff">s</span>ervices<span class="idiff right"> at startup</span>?</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">_Description: A<span class="idiff left">utomatically discover JABA W</span>eb <span class="idiff right">S</span>ervices?</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> The JABAWS system (www.compbio.dundee.ac.uk/jabaws) provides access to a range</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> of third party multiple sequence alignment and analysis tools as web services. </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> Jalview can automatically query the public (or any other configured) JABAWS</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> services on start<span class="idiff left right">-</span>up. Otherwise, users will need to initiate discovery with a</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> services on startup. Otherwise, users will need to initiate discovery with a</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> menu option. </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> Users can enable or disable startup discovery from their own configuration</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,9 +66,11 @@ _Description: Allow discovery of alignment and analysis web services at startup?</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext">Template: jalview/htmltemplates</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext">Type: boolean</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext">Default: true</span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext">_Description: A<span class="idiff left">llow</span> download<span class="idiff">ing</span> HTML templates <span class="idiff right">automatically </span>from Github?</span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> Jalview automatically download<span class="idiff left">s</span> the latest <span class="idiff">'</span>BioJS<span class="idiff">'</span> HTML export template<span class="idiff right"> from</span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> https://github.com/jalview/exporter-templates on startup.</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">_Description: A<span class="idiff left right">utomatically</span> download HTML templates from Github?</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> Jalview <span class="idiff left">cam </span>automatically download the latest <span class="idiff">"</span>BioJS<span class="idiff right">"</span> HTML export template</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"><span class="idiff left right"> from</span> https://github.com/jalview/exporter-templates on startup.</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> Users can only enable or disable this feature from their own configuration</span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> file.</span></pre>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> This is a convenience for users but can be deactivated as it causes an</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> automatic ping to Github.</span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> Individual users can override this setting in their configuration file.</span></pre>
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