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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/java-team/jalview">Debian Java Maintainers / jalview</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/6b864efd282edc1540958982e6980924bbff4d76">6b864efd</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T21:11:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.11.4.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/43eef60a560b0c5030b001e725815254768b6f3c">43eef60a</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T21:14:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.11.4.0+dfsg'
Update to upstream version '2.11.4.0+dfsg'
with Debian dir de00de075815e1b8068aa0bd256ea1ace619892e</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/c6756c6a48c71a9ff2b34d8e12e4a3d74f078fe8">c6756c6a</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T22:17:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/23f936c28450ebdbab30620f0f6415f50f9cd709">23f936c2</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T22:18:20+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Raising Standards version to 4.7.0 (no change)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/6eb00d2d063d8db7d00c9fae8f0ee41022d1c6d7">6eb00d2d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T22:18:49+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Raising d/copyright years
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/c924b5f1f4279acf250d1918af9d461ba1edf35b">c924b5f1</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T22:22:16+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adding URL in the MetaInfo file
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/a29ed06dc3f21195403687ea10259b343a242af0">a29ed06d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-24T22:22:36+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/f19ab93b7b86cd5ee5303c8c23719c028bbd4348">f19ab93b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-25T15:52:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adding commons-math3 to the (build-)dependencies
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/6b3018b98301f0fb36263a3edb97b02483e6f1ae">6b3018b9</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-25T15:52:56+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/f69e4f0d997f7b3bdfe0cd226c04f18282599f12">f69e4f0d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-25T15:53:26+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Overriding user.home in the wrapper so that autopkgtests succeed with no /home directory
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/8203d6504efafb77773b1694662f7044e18f7226">8203d650</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-25T15:54:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/java-team/jalview/-/commit/042f45677c00a50599e8f5da6da0856eda603862">042f4567</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-09-25T15:54:10+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#28e4a2e57ea1412e35cd955351520c20c1e52c43">
.settings/org.eclipse.jdt.core.prefs
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<li class="file-stats">
<a href="#f73b278fdabab028fe5f65c62197e4b5634529e5">
RELEASE
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<a href="#79c9d1fd839de89292fdb165a2d3a65633a3262e">
<span class="new-file">
+
appletlib.zip
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<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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<li class="file-stats">
<a href="#1a8a89bb95ebca5f0f6e687ea3d1f744eb9eb046">
build_properties
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#b226e94cdfcfda98a217715978205912941bbdbd">
debian/jalview.manifest
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<li class="file-stats">
<a href="#ccca84bd39c2d3958ae4a6a526dfdd95c67f4442">
debian/org.jalview.jalview.metainfo.xml
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<li class="file-stats">
<a href="#fc5ae557521a045def1baf0888447a430b89e6b3">
debian/patches/build_gradle.patch
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<a href="#ab9c4505cf9715e504d6bee67d62dc557cb0ce1d">
debian/patches/deactivate_classgraph.patch
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<a href="#57bcab9118ba6454c0d99677406e2b3ee4cc6210">
debian/patches/deactivate_flatlaf.patch
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<a href="#9f1e7dc233684e984887726aeb81d482d4a25f82">
debian/patches/deactivate_getdown.patch
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<a href="#eeafc24892f558b6e37e00f5dc0e8efdf4dc9a34">
debian/patches/deactivate_google_analytics.patch
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<a href="#f130a24425ae772605643deb0429bacb3941565d">
debian/patches/get_rid_of_quaqua.patch
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<a href="#b1a94f276bf01e9796c83329b5c23991334b3e8e">
debian/patches/groovy_syntax.patch
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<a href="#50ba405119bfa7c66579d11951aeae6097ed9597">
debian/patches/no_applet.patch
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<a href="#f838f7c184a0e9d187c43c780e8e7c35a34177b7">
debian/patches/selecting_tests_in_build_gradle.patch
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<a href="#d1b7c0fa935da95faa1d3fe5a469271ceb69fd8e">
debian/patches/timestamp_from_changelog.patch
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<a href="#cb1d1f42ab4dd68f0262425a13b7803af046f748">
debian/patches/write_build_properties.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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debian/wrappers/jalview
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doc/AddingGroovySupport.html
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<a href="#3d3a9779a404cdc30f87a6f27787f9e91e0a228d">
doc/JalviewRNASupport.html
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<a href="#c4ef4636b11f572503dbde6bcdd8fabeb692400f">
doc/UnitTesting.html
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doc/biojsmsa-templates.html
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<a href="#b7c00b7004069a7c3c9343b2c549d773de462f11">
doc/building.md
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<a href="#e9f34c6fe5c28caa59f872cb2f54d4a3bbdd7dcf">
doc/developing.html
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<a href="#baf1bee556816a2aa75a3d12f225fb373fbcf0f7">
doc/i18n.html
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The diff was not included because it is too large.
</h5>
</div>
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