[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_9 #34394
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Apr 8 09:39:17 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_amd64_9/34394/>
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[CC] cmd/cat_tracks.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/cat_tracks.cpp -o cmd/cat_tracks.o
[CC] lib/math/matrix.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/matrix.cpp -o lib/math/matrix.o
[CC] src/dwi/tractography/mds.o
[CC] lib/image/format/base.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/base.cpp -o lib/image/format/base.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/mds.cpp -o src/dwi/tractography/mds.o
[CC] cmd/normalise_tracks.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/normalise_tracks.cpp -o cmd/normalise_tracks.o
[CC] cmd/mrinfo.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrinfo.cpp -o cmd/mrinfo.o
[CC] cmd/find_SH_peaks.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/find_SH_peaks.cpp -o cmd/find_SH_peaks.o
[CC] cmd/average.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/average.cpp -o cmd/average.o
[CC] src/mrview/dialog/properties.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -Ilib -Isrc src/mrview/dialog/properties.cpp -o src/mrview/dialog/properties.o
[CC] lib/file/key_value.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/key_value.cpp -o lib/file/key_value.o
[CC] lib/math/linalg.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/linalg.cpp -o lib/math/linalg.o
[CC] cmd/mrconvert.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrconvert.cpp -o cmd/mrconvert.o
[CC] src/dwi/gradient.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/gradient.cpp -o src/dwi/gradient.o
[CC] lib/mrtrix.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/mrtrix.cpp -o lib/mrtrix.o
[CC] cmd/tensor2vector.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2vector.cpp -o cmd/tensor2vector.o
[CC] lib/file/dicom/image.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/image.cpp -o lib/file/dicom/image.o
[CC] cmd/dwi2tensor.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dwi2tensor.cpp -o cmd/dwi2tensor.o
[CC] cmd/gen_ROI.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_ROI.cpp -o cmd/gen_ROI.o
[CC] src/mrview/sidebar/tractography.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -Ilib -Isrc src/mrview/sidebar/tractography.cpp -o src/mrview/sidebar/tractography.o
[CC] src/mrview/dialog/progress.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -Ilib -Isrc src/mrview/dialog/progress.cpp -o src/mrview/dialog/progress.o
[CC] cmd/dicom_filename.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dicom_filename.cpp -o cmd/dicom_filename.o
[CC] cmd/tensor2FA.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2FA.cpp -o cmd/tensor2FA.o
[CC] src/mrview/sidebar/tractography/track_list.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -Ilib -Isrc src/mrview/sidebar/tractography/track_list.cpp -o src/mrview/sidebar/tractography/track_list.o
[CC] src/mrview/display_area.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -Ilib -Isrc src/mrview/display_area.cpp -o src/mrview/display_area.o
[CC] cmd/track_info.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/track_info.cpp -o cmd/track_info.o
[CC] lib/file/dicom/element.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/element.cpp -o lib/file/dicom/element.o
[CC] cmd/truncate_tracks.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/truncate_tracks.cpp -o cmd/truncate_tracks.o
[CC] cmd/csdeconv.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/csdeconv.cpp -o cmd/csdeconv.o
[CC] lib/image/format/dicom.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/dicom.cpp -o lib/image/format/dicom.o
[CC] cmd/mradd.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mradd.cpp -o cmd/mradd.o
[CC] lib/image/format/mrtrix.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/mrtrix.cpp -o lib/image/format/mrtrix.o
[CC] cmd/sample_tracks.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/sample_tracks.cpp -o cmd/sample_tracks.o
[CC] src/dwi/tractography/tracker/dt_stream.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/dt_stream.cpp -o src/dwi/tractography/tracker/dt_stream.o
[CC] src/dialog/file.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -Ilib -Isrc src/dialog/file.cpp -o src/dialog/file.o
[CC] src/icon.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -Ilib -Isrc src/icon.cpp -o src/icon.o
[CC] src/histogram.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc src/histogram.cpp -o src/histogram.o
[CC] src/dwi/render_frame.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -Ilib -Isrc src/dwi/render_frame.cpp -o src/dwi/render_frame.o
[CC] src/dwi/tractography/tracker/sd_prob.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/sd_prob.cpp -o src/dwi/tractography/tracker/sd_prob.o
[CC] src/dwi/tractography/tracker/sd_stream.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/sd_stream.cpp -o src/dwi/tractography/tracker/sd_stream.o
[CC] lib/data_type.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Ilib -Isrc lib/data_type.cpp -o lib/data_type.o
[CC] src/mrview/image.o
g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -std=c++11 -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/x86_64-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/x86_64-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/x86_64-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/x86_64-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -Ilib -Isrc src/mrview/image.cpp -o src/mrview/image.o
[LD] lib/libmrtrix-0_2_12.so
g++ -shared -g -Wl,-z,relro lib/math/vector.o lib/math/matrix.o lib/file/dicom/study.o lib/file/dicom/quick_scan.o lib/image/format/list.o lib/file/dicom/image.o lib/file/config.o lib/point.o lib/image/name_parser.o lib/image/format/xds.o lib/data_type.o lib/args.o lib/file/dicom/patient.o lib/file/dicom/tree.o lib/image/fft.o lib/image/header.o lib/file/dicom/mapper.o lib/file/dicom/select_cmdline.o lib/math/linalg.o lib/image/format/analyse.o lib/file/dicom/element.o lib/file/mmap.o lib/image/format/nifti1.o lib/file/dicom/dict.o lib/image/format/mrtrix.o lib/image/format/base.o lib/image/axis.o lib/image/interp.o lib/image/mapper.o lib/file/dicom/series.o lib/mrtrix.o lib/image/format/mri.o lib/image/object.o lib/image/format/dicom.o lib/app.o lib/file/key_value.o -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lgsl -lgslcblas -lz -o lib/libmrtrix-0_2_12.so
[LB] bin/tensor2ADC
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/tensor2ADC.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2ADC
[LB] bin/mrinfo
[LB] bin/gen_WM_mask
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/gen_WM_mask.o src/dwi/SH.o src/dwi/gradient.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_WM_mask
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrinfo.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrinfo
[LB] bin/median3D
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/median3D.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/median3D
[LB] bin/gen_ROI
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/gen_ROI.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_ROI
[LB] bin/find_SH_peaks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/SH.o cmd/find_SH_peaks.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/find_SH_peaks
[LB] bin/import_tracks
[LB] bin/sdeconv
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/sdeconv.o src/dwi/SH.o src/dwi/gradient.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/sdeconv
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/import_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/import_tracks
[LB] bin/mrabs
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrabs.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrabs
[LB] bin/tensor_metric
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/tensor_metric.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor_metric
[LB] bin/tracks2prob
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/file.o cmd/tracks2prob.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tracks2prob
[LB] bin/cat_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/cat_tracks.o src/dwi/tractography/tracker/base.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/cat_tracks
[LB] bin/dwi2tensor
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/gradient.o cmd/dwi2tensor.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dwi2tensor
[LB] bin/resample_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/resample_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/resample_tracks
[LB] bin/read_ximg
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/read_ximg.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/read_ximg
[LB] bin/dicom_filename
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/dicom_filename.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dicom_filename
[LB] bin/mrstats
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrstats.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrstats
[LB] bin/estimate_response
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/gradient.o src/dwi/SH.o cmd/estimate_response.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/estimate_response
[LB] bin/streamtrack
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/tracker/base.o src/dwi/SH.o src/dwi/tractography/file.o src/dwi/tractography/tracker/sd_stream.o src/dwi/tractography/tracker/sd_prob.o src/dwi/gradient.o src/dwi/tractography/tracker/dt_stream.o cmd/streamtrack.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/streamtrack
[LB] bin/mradd
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mradd.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mradd
[LB] bin/mrconvert
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrconvert.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrconvert
[LB] bin/average
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/average.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/average
[LB] bin/erode
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/erode.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/erode
[LB] bin/normalise_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/normalise_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/normalise_tracks
[LB] bin/tensor2vector
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/tensor2vector.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2vector
[LB] bin/select_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/select_tracks.o src/dwi/tractography/file.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/select_tracks
[LB] bin/read_dicom
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/read_dicom.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/read_dicom
[LB] bin/disp_profile
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/icon.o cmd/disp_profile.o src/dwi/renderer.o src/dwi/SH.o src/dwi/render_frame.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgdk-x11-2.0 -lpangox-1.0 -lX11 -Wl,--export-dynamic -lgmodule-2.0 -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -lz -o bin/disp_profile
[LB] bin/tracks2vtk
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/tracks2vtk.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tracks2vtk
[LB] bin/truncate_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/file.o cmd/truncate_tracks.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/truncate_tracks
[LB] bin/gen_unit_warp
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/file.o src/dwi/tractography/mds.o cmd/gen_unit_warp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_unit_warp
[LB] bin/track_info
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/file.o cmd/track_info.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/track_info
[LB] bin/mrview
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/mrview/display_area.o src/mrview/mode/normal.o src/mrview/window.o src/mrview/dialog/progress.o src/mrview/sidebar/roi_analysis.o src/mrview/sidebar/roi_analysis/roi_list.o src/mrview/texture.o src/dialog/file.o src/mrview/mode/base.o src/mrview/sidebar/tractography/roi_list.o src/icon.o src/dwi/tractography/mds.o src/mrview/dialog/opengl.o src/mrview/pane.o cmd/mrview.o src/mrview/sidebar/tractography/track_list_item.o src/mrview/sidebar/overlay.o src/mrview/sidebar/orientation_plot.o src/mrview/slice.o src/dwi/renderer.o src/mrview/sidebar/tractography/track_list.o src/mrview/sidebar/screen_capture.o src/dwi/tractography/file.o src/mrview/dialog/error.o src/mrview/sidebar/tractography.o src/mrview/dialog/properties.o src/dwi/render_frame.o src/dwi/SH.o src/mrview/sidebar/main.o src/mrview/image.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgdk-x11-2.0 -lpangox-1.0 -lX11 -Wl,--export-dynamic -lgmodule-2.0 -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -lz -o bin/mrview
[LB] bin/csdeconv
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/gradient.o cmd/csdeconv.o src/dwi/SH.o src/dwi/sdeconv/constrained.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/csdeconv
[LB] bin/sample_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/file.o cmd/sample_tracks.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/sample_tracks
[LB] bin/filter_tracks
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/tractography/file.o cmd/filter_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/tracker/base.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/filter_tracks
[LB] bin/gendir
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/gendir.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gendir
[LB] bin/mrtransform
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrtransform.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrtransform
[LB] bin/dwi2SH
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/dwi/gradient.o src/dwi/SH.o cmd/dwi2SH.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dwi2SH
[LB] bin/mrcat
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrcat.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrcat
[LB] bin/mrmult
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/mrmult.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrmult
[LB] bin/dir2amp
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/dir2amp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dir2amp
[LB] bin/cleanup_ANTS_warp
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/cleanup_ANTS_warp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/cleanup_ANTS_warp
[LB] bin/tensor2FA
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib cmd/tensor2FA.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2FA
[LB] bin/threshold
g++ -Wl,-rpath,$ORIGIN/../lib -g -Wl,-z,relro -Llib src/min_max.o cmd/threshold.o src/histogram.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/threshold
# build icon
convert icons/mrtrix.xpm -resize 32x32 mrtrix.xpm
make[1]: Leaving directory '/build/mrtrix-0.2.12'
dh_auto_test
dh_testroot
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/mrtrix-0.2.12'
dh_auto_install
cp debian/mrtrix.links.in debian/mrtrix.links
echo "/usr/share/mrtrix/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix.links
echo "/usr/share/mrtrix/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix.links
make[1]: Leaving directory '/build/mrtrix-0.2.12'
dh_install
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
debian/rules override_dh_compress
make[1]: Entering directory '/build/mrtrix-0.2.12'
dh_compress -X.html
make[1]: Leaving directory '/build/mrtrix-0.2.12'
dh_fixperms
dh_strip
dh_makeshlibs
debian/rules override_dh_shlibdeps
make[1]: Entering directory '/build/mrtrix-0.2.12'
dh_shlibdeps -l /build/mrtrix-0.2.12/lib
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libatk-1.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libcairomm-1.0.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libX11.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libICE.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libpangomm-1.4.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libfontconfig.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libpangox-1.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libcairo.so.2 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libpango-1.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libgdk_pixbuf-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libpangocairo-1.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libgiomm-2.4.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libgio-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/erode debian/mrtrix/usr/lib/mrtrix/bin/select_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrconvert debian/mrtrix/usr/lib/mrtrix/bin/threshold debian/mrtrix/usr/lib/mrtrix/bin/streamtrack debian/mrtrix/usr/lib/mrtrix/bin/gen_WM_mask debian/mrtrix/usr/lib/mrtrix/bin/mrmult debian/mrtrix/usr/lib/mrtrix/bin/sample_tracks debian/mrtrix/usr/lib/mrtrix/bin/dicom_filename debian/mrtrix/usr/lib/mrtrix/bin/dwi2tensor debian/mrtrix/usr/lib/mrtrix/bin/average debian/mrtrix/usr/lib/mrtrix/bin/read_dicom debian/mrtrix/usr/lib/mrtrix/bin/cleanup_ANTS_warp debian/mrtrix/usr/lib/mrtrix/bin/mrcat debian/mrtrix/usr/lib/mrtrix/bin/sdeconv debian/mrtrix/usr/lib/mrtrix/bin/tensor2vector debian/mrtrix/usr/lib/mrtrix/lib/libmrtrix-0_2_12.so debian/mrtrix/usr/lib/mrtrix/bin/gen_ROI debian/mrtrix/usr/lib/mrtrix/bin/truncate_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrtransform debian/mrtrix/usr/lib/mrtrix/bin/tensor2ADC debian/mrtrix/usr/lib/mrtrix/bin/filter_tracks debian/mrtrix/usr/lib/mrtrix/bin/tensor2FA debian/mrtrix/usr/lib/mrtrix/bin/tensor_metric debian/mrtrix/usr/lib/mrtrix/bin/mrinfo debian/mrtrix/usr/lib/mrtrix/bin/resample_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrstats debian/mrtrix/usr/lib/mrtrix/bin/cat_tracks debian/mrtrix/usr/lib/mrtrix/bin/median3D debian/mrtrix/usr/lib/mrtrix/bin/gen_unit_warp debian/mrtrix/usr/lib/mrtrix/bin/tracks2vtk debian/mrtrix/usr/lib/mrtrix/bin/track_info debian/mrtrix/usr/lib/mrtrix/bin/normalise_tracks debian/mrtrix/usr/lib/mrtrix/bin/tracks2prob debian/mrtrix/usr/lib/mrtrix/bin/mradd debian/mrtrix/usr/lib/mrtrix/bin/import_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrabs debian/mrtrix/usr/lib/mrtrix/bin/dwi2SH debian/mrtrix/usr/lib/mrtrix/bin/find_SH_peaks debian/mrtrix/usr/lib/mrtrix/bin/estimate_response debian/mrtrix/usr/lib/mrtrix/bin/gendir debian/mrtrix/usr/lib/mrtrix/bin/read_ximg debian/mrtrix/usr/lib/mrtrix/bin/csdeconv debian/mrtrix/usr/lib/mrtrix/bin/dir2amp were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libpangoft2-1.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/erode debian/mrtrix/usr/lib/mrtrix/bin/select_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrconvert debian/mrtrix/usr/lib/mrtrix/bin/threshold debian/mrtrix/usr/lib/mrtrix/bin/streamtrack debian/mrtrix/usr/lib/mrtrix/bin/gen_WM_mask debian/mrtrix/usr/lib/mrtrix/bin/mrmult debian/mrtrix/usr/lib/mrtrix/bin/sample_tracks debian/mrtrix/usr/lib/mrtrix/bin/dicom_filename debian/mrtrix/usr/lib/mrtrix/bin/dwi2tensor debian/mrtrix/usr/lib/mrtrix/bin/average debian/mrtrix/usr/lib/mrtrix/bin/read_dicom debian/mrtrix/usr/lib/mrtrix/bin/cleanup_ANTS_warp debian/mrtrix/usr/lib/mrtrix/bin/mrcat debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/sdeconv debian/mrtrix/usr/lib/mrtrix/bin/tensor2vector debian/mrtrix/usr/lib/mrtrix/lib/libmrtrix-0_2_12.so debian/mrtrix/usr/lib/mrtrix/bin/gen_ROI debian/mrtrix/usr/lib/mrtrix/bin/truncate_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrtransform debian/mrtrix/usr/lib/mrtrix/bin/tensor2ADC debian/mrtrix/usr/lib/mrtrix/bin/filter_tracks debian/mrtrix/usr/lib/mrtrix/bin/tensor2FA debian/mrtrix/usr/lib/mrtrix/bin/tensor_metric debian/mrtrix/usr/lib/mrtrix/bin/mrinfo debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/resample_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrstats debian/mrtrix/usr/lib/mrtrix/bin/cat_tracks debian/mrtrix/usr/lib/mrtrix/bin/median3D debian/mrtrix/usr/lib/mrtrix/bin/gen_unit_warp debian/mrtrix/usr/lib/mrtrix/bin/tracks2vtk debian/mrtrix/usr/lib/mrtrix/bin/track_info debian/mrtrix/usr/lib/mrtrix/bin/normalise_tracks debian/mrtrix/usr/lib/mrtrix/bin/tracks2prob debian/mrtrix/usr/lib/mrtrix/bin/mradd debian/mrtrix/usr/lib/mrtrix/bin/import_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrabs debian/mrtrix/usr/lib/mrtrix/bin/dwi2SH debian/mrtrix/usr/lib/mrtrix/bin/find_SH_peaks debian/mrtrix/usr/lib/mrtrix/bin/estimate_response debian/mrtrix/usr/lib/mrtrix/bin/gendir debian/mrtrix/usr/lib/mrtrix/bin/read_ximg debian/mrtrix/usr/lib/mrtrix/bin/csdeconv debian/mrtrix/usr/lib/mrtrix/bin/dir2amp were not linked against libgslcblas.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libgmodule-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libfreetype.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libXt.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libSM.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libgdk-x11-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/disp_profile were not linked against libXmu.so.6 (they use none of the library's symbols)
make[1]: Leaving directory '/build/mrtrix-0.2.12'
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums
dh_builddeb
dpkg-deb: building package 'mrtrix-dbgsym' in '../mrtrix-dbgsym_0.2.12-2_amd64.deb'.
dpkg-deb: building package 'mrtrix-doc' in '../mrtrix-doc_0.2.12-2_all.deb'.
dpkg-deb: building package 'mrtrix' in '../mrtrix_0.2.12-2_amd64.deb'.
/srv/reproducible-results/rbuild-debian-TvJ0Xer5/tmp.PNOxNoyL5V: 38.8% -- replaced with /srv/reproducible-results/rbuild-debian-TvJ0Xer5/tmp.PNOxNoyL5V.gz
INFO: Starting at 2016-04-08 09:39:15.356524
INFO: Finished at 2016-04-08 09:39:15.429234, took: 0:00:00.072730
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1738)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
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