[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_11 #19313

Thu Oct 20 01:21:39 UTC 2016

https://jenkins.debian.net/job/reproducible_builder_i386_11/19313/------------------------------------------
[...truncated 172 lines...]
+ log_file -
+ cat -
+ tee -a /srv/reproducible-results/rbuild-debian-Eki0pxtY/tmp.EHZvG9D3S9
+ sudo timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian-gdIfBU0D/pbuilderrc_Velh --debbuildopts '-b --buildinfo-id=i386' --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian-gdIfBU0D/b1 --logfile b1/build.log python-pysam_0.9.1.4+ds-1.dsc
W: /root/.pbuilderrc does not exist
I: Logging to b1/build.log
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Oct 19 13:20:52 GMT+12 2016
I: pbuilder-time-stamp: 1476926452
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: policy-rc.d already exists
I: using eatmydata during job
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 9), dh-python, libhts-dev (>= 1.3.1), zlib1g-dev, python-all-dev, python-setuptools, cython (>= 0.23), python3-all-dev, python3-setuptools, cython3 (>= 0.23), tabix, samtools (>= 1.3.1), bcftools (>= 1.3.1), python-nose, python3-nose
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18607 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on libhts-dev (>= 1.3.1); however:
  Package libhts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python-all-dev; however:
  Package python-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python-setuptools; however:
  Package python-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cython (>= 0.23); however:
  Package cython is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
  Package python3-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cython3 (>= 0.23); however:
  Package cython3 is not installed.
 pbuilder-satisfydepends-dummy depends on tabix; however:
  Package tabix is not installed.
 pbuilder-satisfydepends-dummy depends on samtools (>= 1.3.1); however:
  Package samtools is not installed.
 pbuilder-satisfydepends-dummy depends on bcftools (>= 1.3.1); however:
  Package bcftools is not installed.
 pbuilder-satisfydepends-dummy depends on python-nose; however:
  Package python-nose is not installed.
 pbuilder-satisfydepends-dummy depends on python3-nose; however:
  Package python3-nose is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libexpat1{a} libexpat1-dev{a} libffi6{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgnutls30{a} libgssapi-krb5-2{a} libhogweed4{a} libhts-dev{a} libhts1{a} libicu57{a} libidn11{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.5{a} libpython3.5-dev{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.0.2{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libunistring0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-nose{a} python-pkg-resources{a} python-setuptools{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-minimal{a} python3-nose{a} python3-pkg-resources{a} python3-setuptools{a} python3.5{a} python3.5-dev{a} python3.5-minimal{a} samtools{a} tabix{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl krb5-locales libglib2.0-data libltdl-dev libmail-sendmail-perl libsasl2-modules lynx-cur shared-mime-info wget xdg-user-dirs xml-core 
0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 108 MB of archives. After unpacking 243 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: bcftools (>= 1.3.1) which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libexpat1{a} libexpat1-dev{a} libffi6{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgnutls30{a} libgssapi-krb5-2{a} libhogweed4{a} libhts-dev{a} libhts1{a} libicu57{a} libidn11{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.5{a} libpython3.5-dev{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.0.2{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libunistring0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-nose{a} python-pkg-resources{a} python-setuptools{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-minimal{a} python3-nose{a} python3-pkg-resources{a} python3-setuptools{a} python3.5{a} python3.5-dev{a} python3.5-minimal{a} samtools{a} tabix{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl krb5-locales libglib2.0-data libltdl-dev libmail-sendmail-perl libsasl2-modules lynx-cur shared-mime-info wget xdg-user-dirs xml-core 
0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 108 MB of archives. After unpacking 243 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/28130 and its subdirectories
+ PRESULT=1
+ '[' 1 -eq 124 ']'
+ false
+ set +x
Thu Oct 20 01:21:37 UTC 2016 - build #1 for python-pysam/unstable/i386 on profitbricks-build2-i386 done.
/srv/reproducible-results/rbuild-debian-Eki0pxtY/tmp.EHZvG9D3S9:	 74.5% -- replaced with /srv/reproducible-results/rbuild-debian-Eki0pxtY/tmp.EHZvG9D3S9.gz
Thu Oct 20 01:21:37 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-RcitAM3L, which will now be removed.
/srv/reproducible-results/rbuild-debian-gdIfBU0D:
total 16
drwxr-xr-x 2 jenkins jenkins 4096 Oct 20 01:21 b1
drwxr-xr-x 2 jenkins jenkins 4096 Oct 20 01:20 b2
-rw-r--r-- 1 jenkins jenkins 2454 Jul 24 01:52 python-pysam_0.9.1.4+ds-1.dsc
-rw------- 1 jenkins jenkins 3550 Oct 20 01:20 tmp.fdmS7UIiJh

/srv/reproducible-results/rbuild-debian-gdIfBU0D/b1:
total 12
-rw-r--r-- 1 jenkins jenkins 8302 Oct 20 01:21 build.log

/srv/reproducible-results/rbuild-debian-gdIfBU0D/b2:
total 0
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Oct 19 13:20:52 GMT+12 2016
I: pbuilder-time-stamp: 1476926452
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: policy-rc.d already exists
I: using eatmydata during job
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 9), dh-python, libhts-dev (>= 1.3.1), zlib1g-dev, python-all-dev, python-setuptools, cython (>= 0.23), python3-all-dev, python3-setuptools, cython3 (>= 0.23), tabix, samtools (>= 1.3.1), bcftools (>= 1.3.1), python-nose, python3-nose
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18607 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on libhts-dev (>= 1.3.1); however:
  Package libhts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python-all-dev; however:
  Package python-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python-setuptools; however:
  Package python-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cython (>= 0.23); however:
  Package cython is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
  Package python3-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cython3 (>= 0.23); however:
  Package cython3 is not installed.
 pbuilder-satisfydepends-dummy depends on tabix; however:
  Package tabix is not installed.
 pbuilder-satisfydepends-dummy depends on samtools (>= 1.3.1); however:
  Package samtools is not installed.
 pbuilder-satisfydepends-dummy depends on bcftools (>= 1.3.1); however:
  Package bcftools is not installed.
 pbuilder-satisfydepends-dummy depends on python-nose; however:
  Package python-nose is not installed.
 pbuilder-satisfydepends-dummy depends on python3-nose; however:
  Package python3-nose is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libexpat1{a} libexpat1-dev{a} libffi6{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgnutls30{a} libgssapi-krb5-2{a} libhogweed4{a} libhts-dev{a} libhts1{a} libicu57{a} libidn11{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.5{a} libpython3.5-dev{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.0.2{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libunistring0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-nose{a} python-pkg-resources{a} python-setuptools{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-minimal{a} python3-nose{a} python3-pkg-resources{a} python3-setuptools{a} python3.5{a} python3.5-dev{a} python3.5-minimal{a} samtools{a} tabix{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl krb5-locales libglib2.0-data libltdl-dev libmail-sendmail-perl libsasl2-modules lynx-cur shared-mime-info wget xdg-user-dirs xml-core 
0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 108 MB of archives. After unpacking 243 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: bcftools (>= 1.3.1) which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libexpat1{a} libexpat1-dev{a} libffi6{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgnutls30{a} libgssapi-krb5-2{a} libhogweed4{a} libhts-dev{a} libhts1{a} libicu57{a} libidn11{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.5{a} libpython3.5-dev{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.0.2{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libunistring0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-nose{a} python-pkg-resources{a} python-setuptools{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-minimal{a} python3-nose{a} python3-pkg-resources{a} python3-setuptools{a} python3.5{a} python3.5-dev{a} python3.5-minimal{a} samtools{a} tabix{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl krb5-locales libglib2.0-data libltdl-dev libmail-sendmail-perl libsasl2-modules lynx-cur shared-mime-info wget xdg-user-dirs xml-core 
0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 108 MB of archives. After unpacking 243 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/28130 and its subdirectories
removed ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-pysam_0.9.1.4+ds-1.rbuild.log’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/python-pysam_0.9.1.4+ds-1.build1.log.gz’
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log:	 76.3%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/python-pysam_0.9.1.4+ds-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-gdIfBU0D/tmp.fdmS7UIiJh
+ mv /srv/reproducible-results/rbuild-debian-gdIfBU0D/tmp.fdmS7UIiJh /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-pysam_0.9.1.4+ds-1.rbuild.log
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-pysam_0.9.1.4+ds-1.rbuild.log’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-pysam_0.9.1.4+ds-1.rbuild.log’: No space left on device
+ cleanup_all
+ '[' 0 = 1 ']'
+ '[' '!' -z '' ']'
+ '[' '!' -f /srv/reproducible-results/rbuild-debian-gdIfBU0D/tmp.fdmS7UIiJh ']'
+ gzip -9fvn /srv/reproducible-results/rbuild-debian-gdIfBU0D/tmp.fdmS7UIiJh
/srv/reproducible-results/rbuild-debian-gdIfBU0D/tmp.fdmS7UIiJh:	 68.9% -- replaced with /srv/reproducible-results/rbuild-debian-gdIfBU0D/tmp.fdmS7UIiJh.gz
+ '[' master = master ']'
+ gen_package_html python-pysam
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''python-pysam'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2016-10-20 01:21:38.806025
INFO: Finished at 2016-10-20 01:21:38.994864, took: 0:00:00.188853
+ cd -
+ cd
+ rm -r /srv/reproducible-results/rbuild-debian-gdIfBU0D
Thu 20 Oct 01:21:39 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-dScnQ5se, which will now be removed.
Build step 'Execute shell' marked build as failure