[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_4 #53868
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Oct 20 01:50:09 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_amd64_4/53868/------------------------------------------
[...truncated 15092 lines...]
-make[4]: Nothing to be done for 'install-exec-am'.
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src/model'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/src/model'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/model »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/model »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src/model »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src/model »
Making install in hub
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/src/hub'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/src/hub'
-make[4]: Nothing to be done for 'install-exec-am'.
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-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src/hub'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/src/hub'
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+make[4]: rien à faire pour « install-exec-am ».
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Making install in program
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/src/program'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/program »
make install-am
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/src/program'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/src/program'
- /bin/mkdir -p '/build-1st/exonerate-2.4.0/debian/exonerate/usr/bin'
- /usr/bin/install -c exonerate ipcress exonerate-server '/build-1st/exonerate-2.4.0/debian/exonerate/usr/bin'
-make[5]: Nothing to be done for 'install-data-am'.
-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/src/program'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src/program'
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+ /bin/mkdir -p '/build-2nd/exonerate-2.4.0/debian/exonerate/usr/bin'
+ /usr/bin/install -c exonerate ipcress exonerate-server '/build-2nd/exonerate-2.4.0/debian/exonerate/usr/bin'
+make[5]: rien à faire pour « install-data-am ».
+make[5] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src/program »
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Making install in util
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/src/util'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/src/util'
- /bin/mkdir -p '/build-1st/exonerate-2.4.0/debian/exonerate/usr/bin'
- /usr/bin/install -c fastaclean fastaclip fastachecksum fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds fasta2esd fastaannotatecdna esd2esi '/build-1st/exonerate-2.4.0/debian/exonerate/usr/bin'
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src/util'
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-make[3]: Entering directory '/build-1st/exonerate-2.4.0/src'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/src'
-make[4]: Nothing to be done for 'install-exec-am'.
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-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/src'
-make[2]: Leaving directory '/build-1st/exonerate-2.4.0/src'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/util »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/util »
+ /bin/mkdir -p '/build-2nd/exonerate-2.4.0/debian/exonerate/usr/bin'
+ /usr/bin/install -c fastaclean fastaclip fastachecksum fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds fasta2esd fastaannotatecdna esd2esi '/build-2nd/exonerate-2.4.0/debian/exonerate/usr/bin'
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src/util »
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+make[4]: rien à faire pour « install-exec-am ».
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Making install in test
-make[2]: Entering directory '/build-1st/exonerate-2.4.0/test'
+make[2] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test »
Making install in data
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/data'
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Making install in cdna
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/data/cdna'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/test/data/cdna'
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-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/cdna'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/cdna'
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Making install in protein
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/test/data/protein'
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-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/data'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/test/data'
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-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/test/data'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/data'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/data'
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data/protein »
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+make[5]: rien à faire pour « install-exec-am ».
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+make[5] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data/protein »
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+make[5]: rien à faire pour « install-exec-am ».
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Making install in exonerate
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/exonerate'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/exonerate'
-make[4]: Nothing to be done for 'install-exec-am'.
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-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/exonerate'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/exonerate'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
Making install in ipcress
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/ipcress'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/ipcress'
-make[4]: Nothing to be done for 'install-exec-am'.
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-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/ipcress'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/ipcress'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/ipcress »
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+make[4]: rien à faire pour « install-exec-am ».
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+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/ipcress »
Making install in util
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/util'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/util'
-make[4]: Nothing to be done for 'install-exec-am'.
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-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/util'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/util'
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test'
-make[4]: Nothing to be done for 'install-exec-am'.
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-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test'
-make[2]: Leaving directory '/build-1st/exonerate-2.4.0/test'
-make[2]: Entering directory '/build-1st/exonerate-2.4.0'
-make[3]: Entering directory '/build-1st/exonerate-2.4.0'
-make[3]: Nothing to be done for 'install-exec-am'.
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-make[3]: Leaving directory '/build-1st/exonerate-2.4.0'
-make[2]: Leaving directory '/build-1st/exonerate-2.4.0'
-make[1]: Leaving directory '/build-1st/exonerate-2.4.0'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/util »
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+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/util »
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+make[4]: rien à faire pour « install-exec-am ».
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+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test »
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+make[2] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
+make[3]: rien à faire pour « install-exec-am ».
+make[3]: rien à faire pour « install-data-am ».
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
+make[2] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
+make[1] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installdocs
debian/rules override_dh_installchangelogs
-make[1]: Entering directory '/build-1st/exonerate-2.4.0'
+make[1] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installchangelogs -k ChangeLog
-make[1]: Leaving directory '/build-1st/exonerate-2.4.0'
+make[1] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
debian/rules override_dh_installexamples
-make[1]: Entering directory '/build-1st/exonerate-2.4.0'
+make[1] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installexamples
-mkdir -p /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples;
-cp -a test/* /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples/;
-find /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples \( -name "Makefile*" -o -name "*.log" -o -name "*.trs" \) -exec rm \{\} \;
-for testfile in `find /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples -name "*.sh"` ; do \
+mkdir -p /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples;
+cp -a test/* /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples/;
+find /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples \( -name "Makefile*" -o -name "*.log" -o -name "*.trs" \) -exec rm \{\} \;
+for testfile in `find /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples -name "*.sh"` ; do \
sed -i -e "s#../../src/util/#/usr/bin/#" \
-e "s#../../src/program/#/usr/bin/#" \
-e "s#../data/#./data/#" \
${testfile} ; \
done
-make[1]: Leaving directory '/build-1st/exonerate-2.4.0'
+make[1] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installman
dh_perl
dh_link
@@ -3254,7 +3265,7 @@
dh_strip
dh_makeshlibs
dh_shlibdeps
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/exonerate/usr/bin/fastafetch debian/exonerate/usr/bin/fastaclip debian/exonerate/usr/bin/fastatranslate debian/exonerate/usr/bin/esd2esi debian/exonerate/usr/bin/fastaindex debian/exonerate/usr/bin/fastadiff debian/exonerate/usr/bin/fastasplit debian/exonerate/usr/bin/fastahardmask debian/exonerate/usr/bin/fastasubseq debian/exonerate/usr/bin/fastaexplode debian/exonerate/usr/bin/fastaremove debian/exonerate/usr/bin/exonerate debian/exonerate/usr/bin/fastaannotatecdna debian/exonerate/usr/bin/fastaclean debian/exonerate/usr/bin/fastarevcomp debian/exonerate/usr/bin/exonerate-server debian/exonerate/usr/bin/fastareformat debian/exonerate/usr/bin/fastasoftmask debian/exonerate/usr/bin/ipcress debian/exonerate/usr/bin/fastachecksum debian/exonerate/usr/bin/fastaoverlap debian/exonerate/usr/bin/fastanrdb debian/exonerate/usr/bin/fastacomposition debian/exonerate/usr/bin/fastavalidcds debian/exonerate/usr/bin/fastalength debian/exonerate/usr/bin/fasta2esd debian/exonerate/usr/bin/fastasort were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/exonerate/usr/bin/exonerate debian/exonerate/usr/bin/fastachecksum debian/exonerate/usr/bin/exonerate-server debian/exonerate/usr/bin/fastaclip debian/exonerate/usr/bin/fastaremove debian/exonerate/usr/bin/fastacomposition debian/exonerate/usr/bin/fastadiff debian/exonerate/usr/bin/fastarevcomp debian/exonerate/usr/bin/ipcress debian/exonerate/usr/bin/fastasort debian/exonerate/usr/bin/fastaindex debian/exonerate/usr/bin/fastasubseq debian/exonerate/usr/bin/fastasoftmask debian/exonerate/usr/bin/fastasplit debian/exonerate/usr/bin/fastafetch debian/exonerate/usr/bin/fastaclean debian/exonerate/usr/bin/fastatranslate debian/exonerate/usr/bin/esd2esi debian/exonerate/usr/bin/fastahardmask debian/exonerate/usr/bin/fastaannotatecdna debian/exonerate/usr/bin/fastalength debian/exonerate/usr/bin/fastavalidcds debian/exonerate/usr/bin/fastareformat debian/exonerate/usr/bin/fastanrdb debian/exonerate/usr/bin/fasta2esd debian/exonerate/usr/bin/fastaexplode debian/exonerate/usr/bin/fastaoverlap were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
@@ -3270,12 +3281,14 @@
dpkg-source --after-build exonerate-2.4.0
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/51843/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/51843/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/25033 and its subdirectories
-I: Current time: Tue Nov 21 19:37:05 GMT+12 2017
-I: pbuilder-time-stamp: 1511336225
+I: removing directory /srv/workspace/pbuilder/51843 and its subdirectories
+I: Current time: jeudi 20 octobre 2016, 15:50:01 (UTC+1400)
+I: pbuilder-time-stamp: 1476928201
/srv/reproducible-results/rbuild-debian-mncD1mFo/tmp.mdoH05ET1I: 95.7% -- replaced with /srv/reproducible-results/rbuild-debian-mncD1mFo/tmp.mdoH05ET1I.gz
INFO: Starting at 2016-10-20 01:50:08.740547
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/exonerate_2.4.0-2_amd64.buildinfo
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/exonerate didn't produce a buildlog, even though it has been built.
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/exonerate is unreproducible, but without diffoscope output.
INFO: Finished at 2016-10-20 01:50:08.843302, took: 0:00:00.102769
Thu 20 Oct 01:50:08 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-Ig2PYiTO, which will now be removed.
Build step 'Execute shell' marked build as failure
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