[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_arm64_8 #1777
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Jan 6 01:23:15 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_arm64_8/1777/------------------------------------------
[...truncated 593.19 KB...]
+tar: ./usr/share/man/es/man1: time stamp 2019-03-08 10:32:02 is 33914855.42233934 s in the future
+tar: ./usr/share/man/es/man8: time stamp 2019-03-08 10:32:02 is 33914855.4223162 s in the future
+tar: ./usr/share/man/es: time stamp 2019-03-08 10:31:35 is 33914828.42229382 s in the future
+tar: ./usr/share/man/de/man8: time stamp 2019-03-08 10:32:02 is 33914855.422271 s in the future
+tar: ./usr/share/man: time stamp 2019-03-08 10:31:58 is 33914851.42224052 s in the future
+tar: ./usr/share/doc/aptitude: time stamp 2019-03-08 10:31:58 is 33914851.422213 s in the future
+tar: ./usr/share/doc/cpp: time stamp 2019-03-08 10:31:42 is 33914835.42218944 s in the future
+tar: ./usr/share/doc/build-essential: time stamp 2019-03-08 10:31:37 is 33914830.42216694 s in the future
+tar: ./usr/share/doc: time stamp 2019-03-08 10:32:01 is 33914854.42214474 s in the future
+tar: ./usr/share: time stamp 2019-03-08 10:31:59 is 33914852.42212322 s in the future
+tar: ./usr: time stamp 2019-03-08 10:31:14 is 33914807.42210316 s in the future
+tar: ./lib: time stamp 2019-03-08 10:31:48 is 33914841.42208302 s in the future
+tar: ./etc/systemd/system/timers.target.wants: time stamp 2019-03-08 10:31:48 is 33914841.42206072 s in the future
+tar: ./etc/systemd/system: time stamp 2019-03-08 10:31:48 is 33914841.42203876 s in the future
+tar: ./etc/rcS.d: time stamp 2019-03-08 10:31:31 is 33914824.4220135 s in the future
+tar: ./etc/rc6.d: time stamp 2019-03-08 10:31:31 is 33914824.42199072 s in the future
+tar: ./etc/rc0.d: time stamp 2019-03-08 10:31:31 is 33914824.42196538 s in the future
+tar: ./etc/alternatives: time stamp 2019-03-08 10:32:02 is 33914855.42194424 s in the future
+tar: ./dev: time stamp 2019-03-08 10:32:42 is 33914895.42191534 s in the future
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
@@ -18,7 +2168,7 @@
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Mon Jan 11 22:20:42 2016 -12
+gpgv: Signature made Wed Jan 13 00:20:42 2016 +14
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./zalign_0.9.1-2.dsc
@@ -27,6 +2177,18 @@
dpkg-source: info: unpacking zalign_0.9.1-2.debian.tar.xz
dpkg-source: info: applying hardening.patch
I: Installing the build-deps
+I: user script /srv/workspace/pbuilder/4833/tmp/hooks/D01_modify_environment starting
+disorder-fs debug: Running on codethink-sled13-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/4833/tmp/hooks/D01_modify_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -116,7 +2278,7 @@
Get: 46 http://ftp.uk.debian.org/debian unstable/main arm64 libopenmpi2 arm64 2.0.2~git.20161225-8 [1927 kB]
Get: 47 http://ftp.uk.debian.org/debian unstable/main arm64 openmpi-common all 2.0.2~git.20161225-8 [148 kB]
Get: 48 http://ftp.uk.debian.org/debian unstable/main arm64 libopenmpi-dev arm64 2.0.2~git.20161225-8 [1058 kB]
-Fetched 23.8 MB in 2s (9292 kB/s)
+Fetched 23.8 MB in 4s (5767 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package groff-base.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 18444 files and directories currently installed.)
@@ -333,13 +2495,15 @@
fakeroot is already the newest version (1.21-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/1st/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=arm64 -rfakeroot
+I: user script /srv/workspace/pbuilder/4833/tmp/hooks/A01_modfiy_src_dir starting
+I: user script /srv/workspace/pbuilder/4833/tmp/hooks/A01_modfiy_src_dir finished
+I: Running cd /build/zalign-0.9.1/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-id=arm64 -rfakeroot
dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
dpkg-buildpackage: info: source package zalign
dpkg-buildpackage: info: source version 0.9.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
- dpkg-source --before-build zalign-0.9.1
+ dpkg-source --before-build 2nd
dpkg-buildpackage: info: host architecture arm64
fakeroot debian/rules clean
dh clean --with autoreconf
@@ -489,20 +2653,20 @@
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build
make -j1
-make[1]: Entering directory '/build/1st/zalign-0.9.1'
+make[1]: Entering directory '/build/zalign-0.9.1/2nd'
make all-recursive
-make[2]: Entering directory '/build/1st/zalign-0.9.1'
+make[2]: Entering directory '/build/zalign-0.9.1/2nd'
Making all in src
-make[3]: Entering directory '/build/1st/zalign-0.9.1/src'
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignarray.o alignarray.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignbounds.o alignbounds.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignment.o alignment.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkalign.o blkalign.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkborder.o blkborder.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkseq.o blkseq.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkstrat.o blkstrat.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o fastareader.o fastareader.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o linearfickettaligner.o linearfickettaligner.cpp
+make[3]: Entering directory '/build/zalign-0.9.1/2nd/src'
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignarray.o alignarray.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignbounds.o alignbounds.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignment.o alignment.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkalign.o blkalign.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkborder.o blkborder.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkseq.o blkseq.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkstrat.o blkstrat.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o fastareader.o fastareader.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o linearfickettaligner.o linearfickettaligner.cpp
linearfickettaligner.cpp: In member function 'void LinearFickettAligner::initializeFickettTable()':
linearfickettaligner.cpp:78:14: warning: variable 'i' set but not used [-Wunused-but-set-variable]
position_t i;
@@ -526,7 +2690,7 @@
../include/linearfickettaligner.h:70:22: required from 'void LinearFickettAligner::LinearFickettTable<T>::reserve(count_t) [with T = unsigned char; count_t = unsigned int]'
linearfickettaligner.cpp:142:26: required from here
../include/linearfickettaligner.h:123:16: warning: variable 'size' set but not used [-Wunused-but-set-variable]
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialign.o mpialign.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialign.o mpialign.cpp
mpialign.cpp: In function 'void gatherBestScores()':
mpialign.cpp:248:55: warning: format '%d' expects argument of type 'int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
printf ("Alignments found: %d\n", root_BufferCount);
@@ -538,15 +2702,15 @@
mpialign.cpp:363:58: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
printf (" T sequence: %u characters\n", strlen(t));
^
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignmaster.o mpialignmaster.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignslave.o mpialignslave.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o opt.o opt.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o score.o score.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o sequence.o sequence.cpp
-/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z,relro -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o
-libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z -Wl,relro -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o -lm
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o limitsplotter.o limitsplotter.cpp
-mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o zalign.o zalign.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignmaster.o mpialignmaster.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignslave.o mpialignslave.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o opt.o opt.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o score.o score.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o sequence.o sequence.cpp
+/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z,relro -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o
+libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z -Wl,relro -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o -lm
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o limitsplotter.o limitsplotter.cpp
+mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o zalign.o zalign.cpp
zalign.cpp: In function 'int main(int, char**)':
zalign.cpp:136:56: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
printf (" S sequence: %u characters\n", strlen(s));
@@ -554,47 +2718,47 @@
zalign.cpp:138:56: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
printf (" T sequence: %u characters\n", strlen(t));
^
-/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z,relro -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o
-libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -fdebug-prefix-map=/build/1st/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z -Wl,relro -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o -lm
-make[3]: Leaving directory '/build/1st/zalign-0.9.1/src'
-make[3]: Entering directory '/build/1st/zalign-0.9.1'
-make[3]: Leaving directory '/build/1st/zalign-0.9.1'
-make[2]: Leaving directory '/build/1st/zalign-0.9.1'
-make[1]: Leaving directory '/build/1st/zalign-0.9.1'
+/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z,relro -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o
+libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -fdebug-prefix-map=/build/zalign-0.9.1/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z -Wl,relro -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o -lm
+make[3]: Leaving directory '/build/zalign-0.9.1/2nd/src'
+make[3]: Entering directory '/build/zalign-0.9.1/2nd'
+make[3]: Leaving directory '/build/zalign-0.9.1/2nd'
+make[2]: Leaving directory '/build/zalign-0.9.1/2nd'
+make[1]: Leaving directory '/build/zalign-0.9.1/2nd'
dh_auto_test
make -j1 check VERBOSE=1
-make[1]: Entering directory '/build/1st/zalign-0.9.1'
+make[1]: Entering directory '/build/zalign-0.9.1/2nd'
Making check in src
-make[2]: Entering directory '/build/1st/zalign-0.9.1/src'
+make[2]: Entering directory '/build/zalign-0.9.1/2nd/src'
make[2]: Nothing to be done for 'check'.
-make[2]: Leaving directory '/build/1st/zalign-0.9.1/src'
-make[2]: Entering directory '/build/1st/zalign-0.9.1'
-make[2]: Leaving directory '/build/1st/zalign-0.9.1'
-make[1]: Leaving directory '/build/1st/zalign-0.9.1'
+make[2]: Leaving directory '/build/zalign-0.9.1/2nd/src'
+make[2]: Entering directory '/build/zalign-0.9.1/2nd'
+make[2]: Leaving directory '/build/zalign-0.9.1/2nd'
+make[1]: Leaving directory '/build/zalign-0.9.1/2nd'
fakeroot debian/rules binary
dh binary --with autoreconf
dh_testroot
dh_prep
dh_auto_install
- make -j1 install DESTDIR=/build/1st/zalign-0.9.1/debian/zalign AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory '/build/1st/zalign-0.9.1'
+ make -j1 install DESTDIR=/build/zalign-0.9.1/2nd/debian/zalign AM_UPDATE_INFO_DIR=no
+make[1]: Entering directory '/build/zalign-0.9.1/2nd'
Making install in src
-make[2]: Entering directory '/build/1st/zalign-0.9.1/src'
-make[3]: Entering directory '/build/1st/zalign-0.9.1/src'
- /bin/mkdir -p '/build/1st/zalign-0.9.1/debian/zalign/usr/bin'
- /bin/bash ../libtool --mode=install /usr/bin/install -c mpialign zalign '/build/1st/zalign-0.9.1/debian/zalign/usr/bin'
-libtool: install: /usr/bin/install -c mpialign /build/1st/zalign-0.9.1/debian/zalign/usr/bin/mpialign
-libtool: install: /usr/bin/install -c zalign /build/1st/zalign-0.9.1/debian/zalign/usr/bin/zalign
+make[2]: Entering directory '/build/zalign-0.9.1/2nd/src'
+make[3]: Entering directory '/build/zalign-0.9.1/2nd/src'
+ /bin/mkdir -p '/build/zalign-0.9.1/2nd/debian/zalign/usr/bin'
+ /bin/sh ../libtool --mode=install /usr/bin/install -c mpialign zalign '/build/zalign-0.9.1/2nd/debian/zalign/usr/bin'
+libtool: install: /usr/bin/install -c mpialign /build/zalign-0.9.1/2nd/debian/zalign/usr/bin/mpialign
+libtool: install: /usr/bin/install -c zalign /build/zalign-0.9.1/2nd/debian/zalign/usr/bin/zalign
make[3]: Nothing to be done for 'install-data-am'.
-make[3]: Leaving directory '/build/1st/zalign-0.9.1/src'
-make[2]: Leaving directory '/build/1st/zalign-0.9.1/src'
-make[2]: Entering directory '/build/1st/zalign-0.9.1'
-make[3]: Entering directory '/build/1st/zalign-0.9.1'
+make[3]: Leaving directory '/build/zalign-0.9.1/2nd/src'
+make[2]: Leaving directory '/build/zalign-0.9.1/2nd/src'
+make[2]: Entering directory '/build/zalign-0.9.1/2nd'
+make[3]: Entering directory '/build/zalign-0.9.1/2nd'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
-make[3]: Leaving directory '/build/1st/zalign-0.9.1'
-make[2]: Leaving directory '/build/1st/zalign-0.9.1'
-make[1]: Leaving directory '/build/1st/zalign-0.9.1'
+make[3]: Leaving directory '/build/zalign-0.9.1/2nd'
+make[2]: Leaving directory '/build/zalign-0.9.1/2nd'
+make[1]: Leaving directory '/build/zalign-0.9.1/2nd'
dh_installdocs
dh_installchangelogs
dh_installman
@@ -621,15 +2785,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../zalign_0.9.1-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build zalign-0.9.1
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/4833/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/4833/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/14515 and its subdirectories
-I: Current time: Thu Jan 5 13:21:03 -12 2017
-I: pbuilder-time-stamp: 1483665663
+I: removing directory /srv/workspace/pbuilder/4833 and its subdirectories
+I: Current time: Thu Feb 8 21:46:11 +14 2018
+I: pbuilder-time-stamp: 1518075971
Starting cleanup.
/srv/reproducible-results/rbuild-debian-tf98UWwv/tmp.pL4xqQhuRU: 78.0% -- replaced with /srv/reproducible-results/rbuild-debian-tf98UWwv/tmp.pL4xqQhuRU.gz
INFO: Starting at 2017-01-06 01:23:15.341602
INFO: Finished at 2017-01-06 01:23:15.581569, took: 0:00:00.239983
All cleanup done.
Fri 6 Jan 01:23:15 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-TsEY8FRO, which will now be removed.
Build step 'Execute shell' marked build as failure
More information about the Qa-jenkins-scm
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