[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_12 #64310
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Jan 6 02:20:07 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_12/64310/------------------------------------------
[...truncated 205.37 KB...]
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Fri, 29 Jul 2016 17:10:00 +0200\"" \
; \
else \
- R CMD INSTALL -l /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Fri, 29 Jul 2016 17:10:00 +0200\"" \
; \
@@ -815,7 +826,7 @@
* installing *source* package 'tgp' ...
** package 'tgp' successfully unpacked and MD5 sums checked
** libs
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c all_draws.c -o all_draws.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.cc -o base.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c corr.cc -o corr.o
@@ -845,10 +856,10 @@
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tgp.cc -o tgp.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tree.cc -o tree.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o tgp.so all_draws.o base.o corr.o dopt.o exp.o exp_sep.o gen_covar.o gp.o lh.o lik_post.o linalg.o list.o matern.o matrix.o model.o mr_exp_sep.o mstructs.o params.o predict.o predict_linear.o rand_draws.o rand_pdf.o randomkit.o rhelp.o sim.o temper.o tgp.o tree.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-installing to /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+installing to /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
** R
** data
** demo
@@ -860,14 +871,14 @@
** installing vignettes
** testing if installed package can be loaded
* DONE (tgp)
-rm -vf /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/R.css \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
+rm -vf /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/R.css \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
if test -f debian/overrides; then \
- install -d /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides ; \
+ install -d /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; \
fi
Adding cdbs dependencies to debian/r-cran-tgp.substvars
dh_installdirs -pr-cran-tgp \
@@ -916,15 +927,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../r-cran-tgp_2.4-14-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-tgp-2.4-14
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/40676/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/40676/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/1465 and its subdirectories
-I: Current time: Wed Feb 7 20:40:38 -12 2018
-I: pbuilder-time-stamp: 1518079238
+I: removing directory /srv/workspace/pbuilder/40676 and its subdirectories
+I: Current time: Fri Jan 6 16:19:35 +14 2017
+I: pbuilder-time-stamp: 1483669175
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff: 70.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff.gz
b2/build.log: 82.3%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 82.5%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/r-cran-tgp_2.4-14-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-402V60su/tmp.32d3yf1lW7
+ mv /srv/reproducible-results/rbuild-debian-402V60su/tmp.32d3yf1lW7 /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-tgp_2.4-14-2_amd64.changes b2/r-cran-tgp_2.4-14-2_amd64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-402V60su
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-402V60su/tmp.CwCAkJyNvS
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-402V60su -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-402V60su/dbd-tmp-sNRCter
++ schroot --directory /srv/reproducible-results/rbuild-debian-402V60su -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
++ date -u
+ echo -e 'Fri Jan 6 02:19:39 UTC 2017 I: diffoscope 67 will be used to compare the two builds:'
Fri Jan 6 02:19:39 UTC 2017 I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-402V60su -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-402V60su/dbd-tmp-sNRCter ; diffoscope --html /srv/reproducible-results/rbuild-debian-402V60su/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-402V60su/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-402V60su/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-402V60su/b2/r-cran-tgp_2.4-14-2_amd64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-402V60su/tmp.CwCAkJyNvS
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-402V60su/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-402V60su/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-402V60su/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-402V60su/b2/r-cran-tgp_2.4-14-2_amd64.changes
========================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
command (total time: 13.170s)
-----------------------------
6.597s 934 calls readelf
2.800s 110 calls objdump
2.100s 127 calls diff
0.654s 6 calls xz
0.551s 2 calls objcopy
0.179s 18 calls gzip
0.167s 50 calls xxd
0.119s 14 calls cmp
0.002s 14 calls cmp (internal)
compare_files (cumulative) (total time: 79.368s)
------------------------------------------------
15.474s 1 call abc.DotChangesFile
15.278s 2 calls abc.DebFile
14.873s 2 calls abc.XzFile
14.267s 2 calls abc.DebDataTarFile
13.219s 2 calls abc.ElfFile
3.592s 10 calls diffoscope.comparators.elf.ElfCodeSection
1.424s 37 calls diffoscope.comparators.elf.ElfSection
0.423s 5 calls abc.GzipFile
0.384s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.134s 2 calls abc.TarFile
0.114s 2 calls diffoscope.comparators.elf.ElfStringSection
0.088s 3 calls diffoscope.comparators.utils.archive.ArchiveMember
0.039s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.035s 1 call abc.TextFile
0.024s 2 calls abc.Md5sumsFile
0.000s 26 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 1.101s)
--------------------------------------
0.655s 6 calls diffoscope.comparators.xz.XzContainer
0.181s 18 calls diffoscope.comparators.gzip.GzipContainer
0.141s 16 calls diffoscope.comparators.deb.DebTarContainer
0.111s 22 calls diffoscope.comparators.deb.DebContainer
0.013s 16 calls diffoscope.comparators.tar.TarContainer
has_same_content_as (total time: 1.010s)
----------------------------------------
0.706s 7 calls diffoscope.comparators.utils.archive.ArchiveMember
0.285s 17 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.016s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.001s 37 calls diffoscope.comparators.elf.ElfSection
0.000s 1 call abc.DotChangesFile
0.000s 26 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.000s 2 calls diffoscope.comparators.elf.ElfStringSection
main (total time: 27.159s)
--------------------------
27.132s 2 calls outputs
0.022s 1 call cleanup
0.006s 1 call parse_args
open_archive (total time: 0.001s)
---------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
output (total time: 11.620s)
----------------------------
11.539s 1 call html
0.081s 1 call text
recognizes (total time: 0.484s)
-------------------------------
0.251s 1188 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.110s 822 calls diffoscope.comparators.utils.archive.ArchiveMember
0.047s 128 calls diffoscope.comparators.debian.DebControlMember
0.035s 10 calls abc.DotChangesFile
0.014s 666 calls diffoscope.comparators.elf.ElfSection
0.004s 180 calls diffoscope.comparators.elf.ElfCodeSection
0.004s 18 calls abc.GzipFile
0.003s 12 calls abc.TarFile
0.003s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.002s 8 calls abc.DebFile
0.002s 8 calls abc.Md5sumsFile
0.002s 6 calls abc.ElfFile
0.002s 6 calls abc.DebDataTarFile
0.002s 6 calls abc.TextFile
0.001s 6 calls abc.XzFile
0.001s 36 calls diffoscope.comparators.elf.ElfStringSection
0.000s 8 calls diffoscope.comparators.binary.FilesystemFile
Fri Jan 6 02:20:07 UTC 2017 E: r-cran-tgp failed to build reproducibly in unstable on amd64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/r-cran-tgp_2.4-14-2.diffoscope.txt’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/r-cran-tgp_2.4-14-2.diffoscope.txt’: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log.gz: No space left on device
Fri 6 Jan 02:20:07 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-MWHXah0z, which will now be removed.
Build step 'Execute shell' marked build as failure
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