[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_1 #62651
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Jan 6 02:32:09 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_1/62651/------------------------------------------
[...truncated 226.73 KB...]
echo "R:Depends=r-base-core (>= 3.3.2-1), r-api-3" >> debian/r-cran-xml.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Sat, 12 Nov 2016 08:45:42 -0600\"" \
; \
else \
- R CMD INSTALL -l /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Sat, 12 Nov 2016 08:45:42 -0600\"" \
; \
@@ -882,7 +899,7 @@
config.status: creating inst/scripts/RSXML.csh
config.status: creating inst/scripts/RSXML.bsh
** libs
-make[1]: Entering directory '/build/1st/r-cran-xml-3.98-1.5/src'
+make[1]: Entering directory '/build/r-cran-xml-3.98-1.5/2nd/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DocParse.c -o DocParse.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c EventParse.c -o EventParse.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ExpatParse.c -o ExpatParse.o
@@ -909,10 +926,10 @@
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xmlsecurity.c -o xmlsecurity.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xpath.c -o xpath.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-xml-3.98-1.5/src'
-make[1]: Entering directory '/build/1st/r-cran-xml-3.98-1.5/src'
-make[1]: Leaving directory '/build/1st/r-cran-xml-3.98-1.5/src'
-installing to /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library/XML/libs
+make[1]: Leaving directory '/build/r-cran-xml-3.98-1.5/2nd/src'
+make[1]: Entering directory '/build/r-cran-xml-3.98-1.5/2nd/src'
+make[1]: Leaving directory '/build/r-cran-xml-3.98-1.5/2nd/src'
+installing to /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library/XML/libs
** R
** inst
** preparing package for lazy loading
@@ -926,15 +943,15 @@
Cleaning up after installing the XML package
** testing if installed package can be loaded
* DONE (XML)
-rm -vf /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library/R.css \
- /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library/XML/COPYING \
- /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library/XML/LICENSE.txt \
- /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library/XML/LICENSE
-removed '/build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/lib/R/site-library/XML/LICENSE'
+rm -vf /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library/R.css \
+ /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library/XML/COPYING \
+ /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library/XML/LICENSE.txt \
+ /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library/XML/LICENSE
+removed '/build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/lib/R/site-library/XML/LICENSE'
if test -f debian/overrides; then \
- install -d /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/share/lintian/overrides ; \
+ install -d /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/1st/r-cran-xml-3.98-1.5/debian/r-cran-xml/usr/share/lintian/overrides/r-cran-xml; \
+ /build/r-cran-xml-3.98-1.5/2nd/debian/r-cran-xml/usr/share/lintian/overrides/r-cran-xml; \
fi
Adding cdbs dependencies to debian/r-cran-xml.substvars
dh_installdirs -pr-cran-xml \
@@ -988,15 +1005,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../r-cran-xml_3.98-1.5-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-xml-3.98-1.5
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/54288/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/54288/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/42328 and its subdirectories
-I: Current time: Thu Jan 5 14:29:59 -12 2017
-I: pbuilder-time-stamp: 1483669799
+I: removing directory /srv/workspace/pbuilder/54288 and its subdirectories
+I: Current time: Thu Feb 8 22:54:36 +14 2018
+I: pbuilder-time-stamp: 1518080076
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-xml_3.98-1.5-1.diff: 75.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-xml_3.98-1.5-1.diff.gz
b2/build.log: 82.3%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 82.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/r-cran-xml_3.98-1.5-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-JtqvBjcb/tmp.alqLeLQQbI
+ mv /srv/reproducible-results/rbuild-debian-JtqvBjcb/tmp.alqLeLQQbI /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-xml_3.98-1.5-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-xml_3.98-1.5-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-xml_3.98-1.5-1_amd64.changes b2/r-cran-xml_3.98-1.5-1_amd64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-JtqvBjcb
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-JtqvBjcb/tmp.BfXvICRQiB
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-JtqvBjcb -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-JtqvBjcb/dbd-tmp-EgDcVJX
++ schroot --directory /srv/reproducible-results/rbuild-debian-JtqvBjcb -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-xml_3.98-1.5-1.rbuild.log
++ date -u
+ echo -e 'Fri Jan 6 02:31:40 UTC 2017 I: diffoscope 67 will be used to compare the two builds:'
Fri Jan 6 02:31:40 UTC 2017 I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-JtqvBjcb -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-JtqvBjcb/dbd-tmp-EgDcVJX ; diffoscope --html /srv/reproducible-results/rbuild-debian-JtqvBjcb/r-cran-xml_3.98-1.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-JtqvBjcb/r-cran-xml_3.98-1.5-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-JtqvBjcb/b1/r-cran-xml_3.98-1.5-1_amd64.changes /srv/reproducible-results/rbuild-debian-JtqvBjcb/b2/r-cran-xml_3.98-1.5-1_amd64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-JtqvBjcb/tmp.BfXvICRQiB
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-JtqvBjcb/r-cran-xml_3.98-1.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-JtqvBjcb/r-cran-xml_3.98-1.5-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-JtqvBjcb/b1/r-cran-xml_3.98-1.5-1_amd64.changes /srv/reproducible-results/rbuild-debian-JtqvBjcb/b2/r-cran-xml_3.98-1.5-1_amd64.changes
================================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
command (total time: 5.615s)
----------------------------
1.740s 74 calls diff
0.833s 415 calls readelf
0.789s 55 calls objdump
0.718s 6 calls xz
0.696s 50 calls xxd
0.510s 2 calls objcopy
0.207s 18 calls gzip
0.119s 12 calls cmp
0.003s 15 calls cmp (internal)
compare_files (cumulative) (total time: 34.999s)
------------------------------------------------
7.296s 1 call abc.DotChangesFile
7.062s 2 calls abc.DebFile
6.649s 2 calls abc.XzFile
5.969s 2 calls abc.DebDataTarFile
3.622s 1 call abc.ElfFile
1.406s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
1.243s 5 calls diffoscope.comparators.elf.ElfCodeSection
0.714s 14 calls diffoscope.comparators.elf.ElfSection
0.590s 5 calls abc.GzipFile
0.186s 3 calls diffoscope.comparators.utils.archive.ArchiveMember
0.147s 2 calls abc.TarFile
0.050s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.035s 2 calls abc.Md5sumsFile
0.032s 1 call abc.TextFile
0.000s 29 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 1.264s)
--------------------------------------
0.719s 6 calls diffoscope.comparators.xz.XzContainer
0.233s 16 calls diffoscope.comparators.deb.DebTarContainer
0.210s 18 calls diffoscope.comparators.gzip.GzipContainer
0.087s 22 calls diffoscope.comparators.deb.DebContainer
0.015s 16 calls diffoscope.comparators.tar.TarContainer
has_same_content_as (total time: 1.174s)
----------------------------------------
0.792s 7 calls diffoscope.comparators.utils.archive.ArchiveMember
0.351s 16 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.030s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.000s 29 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 14 calls diffoscope.comparators.elf.ElfSection
0.000s 1 call abc.DotChangesFile
0.000s 5 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 27.662s)
--------------------------
27.612s 2 calls outputs
0.045s 1 call cleanup
0.005s 1 call parse_args
open_archive (total time: 0.001s)
---------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
output (total time: 20.284s)
----------------------------
20.162s 1 call html
0.122s 1 call text
recognizes (total time: 0.497s)
-------------------------------
0.264s 1152 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.131s 822 calls diffoscope.comparators.utils.archive.ArchiveMember
0.039s 128 calls diffoscope.comparators.debian.DebControlMember
0.030s 10 calls abc.DotChangesFile
0.007s 252 calls diffoscope.comparators.elf.ElfSection
0.005s 90 calls diffoscope.comparators.elf.ElfCodeSection
0.004s 6 calls abc.DebDataTarFile
0.003s 12 calls abc.TarFile
0.003s 18 calls abc.GzipFile
0.002s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.002s 8 calls abc.Md5sumsFile
0.002s 8 calls abc.DebFile
0.002s 6 calls abc.XzFile
0.002s 6 calls abc.TextFile
0.001s 4 calls abc.ElfFile
0.000s 8 calls diffoscope.comparators.binary.FilesystemFile
Fri Jan 6 02:32:09 UTC 2017 E: r-cran-xml failed to build reproducibly in unstable on amd64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/r-cran-xml_3.98-1.5-1.diffoscope.txt’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/r-cran-xml_3.98-1.5-1.diffoscope.txt’: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-xml_3.98-1.5-1.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-xml_3.98-1.5-1.rbuild.log.gz: No space left on device
Fri 6 Jan 02:32:09 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-hOuYa2XX, which will now be removed.
Build step 'Execute shell' marked build as failure
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