[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_8 #30219

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Fri Jan 6 02:41:20 UTC 2017


https://jenkins.debian.net/job/reproducible_builder_i386_8/30219/------------------------------------------
[...truncated 49.37 KB...]
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../22-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../23-dh-strip-nondeterminism_0.029-2_all.deb ...
Unpacking dh-strip-nondeterminism (0.029-2) ...
Selecting previously unselected package libffi6:i386.
Preparing to unpack .../24-libffi6_3.2.1-6_i386.deb ...
Unpacking libffi6:i386 (3.2.1-6) ...
Selecting previously unselected package libglib2.0-0:i386.
Preparing to unpack .../25-libglib2.0-0_2.50.2-2_i386.deb ...
Unpacking libglib2.0-0:i386 (2.50.2-2) ...
Selecting previously unselected package libcroco3:i386.
Preparing to unpack .../26-libcroco3_0.6.11-2_i386.deb ...
Unpacking libcroco3:i386 (0.6.11-2) ...
Selecting previously unselected package libunistring0:i386.
Preparing to unpack .../27-libunistring0_0.9.6+really0.9.3-0.1_i386.deb ...
Unpacking libunistring0:i386 (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../28-gettext_0.19.8.1-1_i386.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
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Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
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Unpacking debhelper (10.2.3) ...
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Unpacking help2man (1.47.4) ...
Selecting previously unselected package zlib1g-dev:i386.
Preparing to unpack .../33-zlib1g-dev_1%3a1.2.8.dfsg-4_i386.deb ...
Unpacking zlib1g-dev:i386 (1:1.2.8.dfsg-4) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:i386 (2.10-5) ...
Setting up groff-base (1.22.3-9) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:i386 (1.4.1-2) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:i386 (57.1-5) ...
Setting up libbsd0:i386 (0.8.3-1) ...
Setting up libxml2:i386 (2.9.4+dfsg1-2.1) ...
Setting up libmagic-mgc (1:5.29-2) ...
Setting up libmagic1:i386 (1:5.29-2) ...
Processing triggers for libc-bin (2.24-8) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:i386 (0.9.6+really0.9.3-0.1) ...
Setting up liblocale-gettext-perl (1.07-3+b1) ...
Setting up libffi6:i386 (3.2.1-6) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up zlib1g-dev:i386 (1:1.2.8.dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (0.029-2) ...
Setting up libglib2.0-0:i386 (2.50.2-2) ...
No schema files found: doing nothing.
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-2) ...
Setting up libcroco3:i386 (0.6.11-2) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up help2man (1.47.4) ...
Setting up man-db (2.7.6.1-2) ...
Building database of manual pages ...
Setting up libtool (2.4.6-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (10.2.3) ...
Setting up dh-strip-nondeterminism (0.029-2) ...
Processing triggers for libc-bin (2.24-8) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.21-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/1st/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=i386 -rfakeroot
dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
dpkg-buildpackage: info: source package snap-aligner
dpkg-buildpackage: info: source version 1.0~beta.18+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
 dpkg-source --before-build snap-aligner-1.0~beta.18+dfsg
dpkg-buildpackage: info: host architecture i386
 fakeroot debian/rules clean
dh clean
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
dh_auto_clean
	make -j18 clean
make[2]: Entering directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
rm -f  SNAPLib/FASTQ.o  SNAPLib/FASTA.o  SNAPLib/BigAlloc.o  SNAPLib/Util.o  SNAPLib/SeedSequencer.o  SNAPLib/GenericFile.o  SNAPLib/Read.o  SNAPLib/DataReader.o  SNAPLib/ChimericPairedEndAligner.o  SNAPLib/DataWriter.o  SNAPLib/AlignerStats.o  SNAPLib/mapq.o  SNAPLib/BufferedAsync.o  SNAPLib/ParallelTask.o  SNAPLib/ReadWriter.o  SNAPLib/Error.o  SNAPLib/ReadSupplierQueue.o  SNAPLib/ProbabilityDistance.o  SNAPLib/Histogram.o  SNAPLib/exit.o  SNAPLib/MultiInputReadSupplier.o  SNAPLib/SingleAligner.o  SNAPLib/BaseAligner.o  SNAPLib/Bam.o  SNAPLib/Genome.o  SNAPLib/GenericFile_stdio.o  SNAPLib/CommandProcessor.o  SNAPLib/stdafx.o  SNAPLib/GenericFile_map.o  SNAPLib/IntersectingPairedEndAligner.o  SNAPLib/PairedAligner.o  SNAPLib/SortedDataWriter.o  SNAPLib/AlignmentResult.o  SNAPLib/GenericFile_Blob.o  SNAPLib/AlignerOptions.o  SNAPLib/GzipDataWriter.o  SNAPLib/LandauVishkin.o  SNAPLib/GenericFile_HDFS.o  SNAPLib/PairedReadMatcher.o  SNAPLib/RangeSplitter.o  SNAPLib/GenomeIndex.o  SNAPLib/SAM.o  SNAPLib/BiasTables.o  SNAPLib/Compat.o  SNAPLib/HashTable.o  SNAPLib/ReadReader.o  SNAPLib/ApproximateCounter.o  SNAPLib/Seed.o  SNAPLib/Tables.o  SNAPLib/AlignerContext.o  apps/snap/Main.o  apps/snap/stdafx.o  tests/ProbabilityDistanceTest.o  tests/LandauVishkinTest.o  tests/TestLib.o  tests/EventTest.o  tests/main.o  apps/SNAPCommand/SNAPCommand.o  apps/SNAPCommand/stdafx.o  snap-aligner unit_tests SNAPCommand snap SNAP
make[2]: Leaving directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
rm -f debian/*.1
rm -f */*.d */*/*.d
make[1]: Leaving directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
   dh_autoreconf_clean
   dh_clean
 debian/rules build
dh build
   dh_testdir
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
dh_auto_build
	make -j18
make[2]: Entering directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/FASTQ.o SNAPLib/FASTQ.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/FASTA.o SNAPLib/FASTA.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/BigAlloc.o SNAPLib/BigAlloc.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Util.o SNAPLib/Util.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/SeedSequencer.o SNAPLib/SeedSequencer.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GenericFile.o SNAPLib/GenericFile.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Read.o SNAPLib/Read.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/DataReader.o SNAPLib/DataReader.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/ChimericPairedEndAligner.o SNAPLib/ChimericPairedEndAligner.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/DataWriter.o SNAPLib/DataWriter.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/AlignerStats.o SNAPLib/AlignerStats.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/mapq.o SNAPLib/mapq.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/BufferedAsync.o SNAPLib/BufferedAsync.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/ParallelTask.o SNAPLib/ParallelTask.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/ReadWriter.o SNAPLib/ReadWriter.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Error.o SNAPLib/Error.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/ReadSupplierQueue.o SNAPLib/ReadSupplierQueue.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/ProbabilityDistance.o SNAPLib/ProbabilityDistance.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Histogram.o SNAPLib/Histogram.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/exit.o SNAPLib/exit.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/MultiInputReadSupplier.o SNAPLib/MultiInputReadSupplier.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/SingleAligner.o SNAPLib/SingleAligner.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/BaseAligner.o SNAPLib/BaseAligner.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Bam.o SNAPLib/Bam.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Genome.o SNAPLib/Genome.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GenericFile_stdio.o SNAPLib/GenericFile_stdio.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/CommandProcessor.o SNAPLib/CommandProcessor.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/stdafx.o SNAPLib/stdafx.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GenericFile_map.o SNAPLib/GenericFile_map.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/IntersectingPairedEndAligner.o SNAPLib/IntersectingPairedEndAligner.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/PairedAligner.o SNAPLib/PairedAligner.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/SortedDataWriter.o SNAPLib/SortedDataWriter.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/AlignmentResult.o SNAPLib/AlignmentResult.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GenericFile_Blob.o SNAPLib/GenericFile_Blob.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/AlignerOptions.o SNAPLib/AlignerOptions.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GzipDataWriter.o SNAPLib/GzipDataWriter.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/LandauVishkin.o SNAPLib/LandauVishkin.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GenericFile_HDFS.o SNAPLib/GenericFile_HDFS.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/PairedReadMatcher.o SNAPLib/PairedReadMatcher.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/RangeSplitter.o SNAPLib/RangeSplitter.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/GenomeIndex.o SNAPLib/GenomeIndex.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/SAM.o SNAPLib/SAM.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/BiasTables.o SNAPLib/BiasTables.cpp
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/Compat.o SNAPLib/Compat.cpp
SNAPLib/SortedDataWriter.cpp: In member function 'bool SortedDataFilterSupplier::mergeSort()':
SNAPLib/SortedDataWriter.cpp:338:70: error: no matching function for call to 'max(long unsigned int, _int64)'
             min(1UL << 23, max(1UL << 17, bufferSpace / blocks.size()))); // 128kB to 8MB buffer space per block
                                                                      ^
In file included from /usr/include/c++/6/algorithm:61:0,
                 from SNAPLib/stdafx.h:13,
                 from SNAPLib/SortedDataWriter.cpp:19:
/usr/include/c++/6/bits/stl_algobase.h:265:5: note: candidate: template<class _Tp, class _Compare> const _Tp& std::max(const _Tp&, const _Tp&, _Compare)
     max(const _Tp& __a, const _Tp& __b, _Compare __comp)
     ^~~
/usr/include/c++/6/bits/stl_algobase.h:265:5: note:   template argument deduction/substitution failed:
SNAPLib/SortedDataWriter.cpp:338:70: note:   deduced conflicting types for parameter 'const _Tp' ('long unsigned int' and '_int64 {aka long long int}')
             min(1UL << 23, max(1UL << 17, bufferSpace / blocks.size()))); // 128kB to 8MB buffer space per block
                                                                      ^
In file included from /usr/include/c++/6/algorithm:61:0,
                 from SNAPLib/stdafx.h:13,
                 from SNAPLib/SortedDataWriter.cpp:19:
/usr/include/c++/6/bits/stl_algobase.h:219:5: note: candidate: template<class _Tp> const _Tp& std::max(const _Tp&, const _Tp&)
     max(const _Tp& __a, const _Tp& __b)
     ^~~
/usr/include/c++/6/bits/stl_algobase.h:219:5: note:   template argument deduction/substitution failed:
SNAPLib/SortedDataWriter.cpp:338:70: note:   deduced conflicting types for parameter 'const _Tp' ('long unsigned int' and '_int64 {aka long long int}')
             min(1UL << 23, max(1UL << 17, bufferSpace / blocks.size()))); // 128kB to 8MB buffer space per block
                                                                      ^
g++ -std=gnu++98 -MMD -ISNAPLib -Wdate-time -D_FORTIFY_SOURCE=2  -c -o SNAPLib/HashTable.o SNAPLib/HashTable.cpp
<builtin>: recipe for target 'SNAPLib/SortedDataWriter.o' failed
make[2]: *** [SNAPLib/SortedDataWriter.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
dh_auto_build: make -j18 returned exit code 2
debian/rules:18: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/build/1st/snap-aligner-1.0~beta.18+dfsg'
debian/rules:11: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
I: copying local configuration
E: Failed autobuilding of package
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/11814 and its subdirectories
removed ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/snap-aligner_1.0~beta.18+dfsg-1.rbuild.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/snap-aligner_1.0~beta.18+dfsg-1.build1.log.gz’
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log:	 79.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/snap-aligner_1.0~beta.18+dfsg-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-CNX9hNnd/tmp.pvmV9Vf6xr
+ mv /srv/reproducible-results/rbuild-debian-CNX9hNnd/tmp.pvmV9Vf6xr /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/snap-aligner_1.0~beta.18+dfsg-1.rbuild.log
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/snap-aligner_1.0~beta.18+dfsg-1.rbuild.log’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/snap-aligner_1.0~beta.18+dfsg-1.rbuild.log’: No space left on device
+ cleanup_all
+ echo 'Starting cleanup.'
Starting cleanup.
+ '[' 0 = 1 ']'
+ '[' '!' -z '' ']'
+ '[' '!' -f /srv/reproducible-results/rbuild-debian-CNX9hNnd/tmp.pvmV9Vf6xr ']'
+ gzip -9fvn /srv/reproducible-results/rbuild-debian-CNX9hNnd/tmp.pvmV9Vf6xr
/srv/reproducible-results/rbuild-debian-CNX9hNnd/tmp.pvmV9Vf6xr:	 76.4% -- replaced with /srv/reproducible-results/rbuild-debian-CNX9hNnd/tmp.pvmV9Vf6xr.gz
+ '[' master = master ']'
+ gen_package_html snap-aligner
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''snap-aligner'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2017-01-06 02:41:20.250116
INFO: Finished at 2017-01-06 02:41:20.650014, took: 0:00:00.399910
+ cd -
+ cd
+ rm -r /srv/reproducible-results/rbuild-debian-CNX9hNnd
+ echo 'All cleanup done.'
All cleanup done.
Fri  6 Jan 02:41:20 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-rjMG1sul, which will now be removed.
Build step 'Execute shell' marked build as failure



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