[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_29 #8450

[jenkins at jenkins.debian.net]

https://jenkins.debian.net/job/reproducible_builder_amd64_29/8450/------------------------------------------
[...truncated 8.65 MB...]
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/DocSQL.py to DocSQL.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/File.py to File.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/Index.py to Index.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/ParserSupport.py to ParserSupport.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/Seq.py to Seq.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/__init__.py to __init__.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/_utils.py to _utils.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/bgzf.py to bgzf.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/kNN.py to kNN.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/pairwise2.py to pairwise2.cpython-35.pyc
+byte-compiling /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/Bio/triefind.py to triefind.cpython-35.pyc
 running install_egg_info
-Writing /build/1st/python-biopython-1.68+dfsg/debian/tmp/usr/lib/python3.5/dist-packages/biopython-1.68.egg-info
+Writing /build/python-biopython-1.68+dfsg/2nd/debian/tmp/usr/lib/python3.5/dist-packages/biopython-1.68.egg-info
 dh_numpy -ppython-biopython
 	(grep -a -s -v python:Depends debian/python-biopython.substvars; echo "python:Depends=python-numpy (>= 1:1.10.0~b1), python-numpy-abi9") > debian/python-biopython.substvars.new
 	mv debian/python-biopython.substvars.new debian/python-biopython.substvars
 dh_numpy3 -ppython3-biopython
 	(grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.10.0~b1), python3-numpy-abi9") > debian/python3-biopython.substvars.new
 	mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars
-make[1]: Leaving directory '/build/1st/python-biopython-1.68+dfsg'
+make[1]: Leaving directory '/build/python-biopython-1.68+dfsg/2nd'
    dh_install -O--buildsystem=pybuild
 	install -d debian/python-biopython//usr/lib/python2.7/dist-packages
 	cp --reflink=auto -a debian/tmp/usr/lib/python2.7/dist-packages/Bio debian/python-biopython//usr/lib/python2.7/dist-packages/
@@ -16491,15 +16508,15 @@
 	install -d debian/python3-biopython-sql//usr/lib/python3.5/dist-packages
 	cp --reflink=auto -a debian/tmp/usr/lib/python3.5/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.5/dist-packages/
    debian/rules override_dh_installdocs-indep
-make[1]: Entering directory '/build/1st/python-biopython-1.68+dfsg'
+make[1]: Entering directory '/build/python-biopython-1.68+dfsg/2nd'
 debian/rules:125: warning: overriding recipe for target 'override_dh_auto_clean'
 debian/rules:59: warning: ignoring old recipe for target 'override_dh_auto_clean'
 dh_installdocs
 	install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc
-	cd 'Doc//..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc
+	cd 'Doc//..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc
 	cp --reflink=auto -a debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc
 	cp --reflink=auto -a debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc
-	cd 'debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc
+	cd 'debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc
 	chown -R 0:0 debian/python-biopython-doc/usr/share/doc
 	chmod -R go=rX debian/python-biopython-doc/usr/share/doc
 	chmod -R u\+rw debian/python-biopython-doc/usr/share/doc
@@ -16515,23 +16532,23 @@
 debian/tmp/usr/lib/python3.5/dist-packages/Tests/Quality/example.fastq.gz
 debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality/example.fastq.gz
 # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well
-cp -a debian/tmp_tests/* /build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/
+cp -a debian/tmp_tests/* /build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/
 find debian -name .cvsignore -delete
 cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean
-make[2]: Entering directory '/build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc'
+make[2]: Entering directory '/build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc'
 make -C install
-make[3]: Entering directory '/build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
+make[3]: Entering directory '/build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
 make[3]: Nothing to be done for 'all'.
-make[3]: Leaving directory '/build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
+make[3]: Leaving directory '/build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
 ( for f in install ; do make clean -C $f ; done )
-make[3]: Entering directory '/build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
+make[3]: Entering directory '/build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
 rm -f Installation.aux
 rm -f Installation.log
 rm -f Installation.out
 rm -f Installation.toc
 rm -f Installation.haux
 rm -f Installation.htoc
-make[3]: Leaving directory '/build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
+make[3]: Leaving directory '/build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install'
 rm -f Tutorial.aux
 rm -f Tutorial.toc
 rm -f Tutorial.log
@@ -16541,13 +16558,13 @@
 rm -f biopdb_faq.aux
 rm -f biopdb_faq.log
 rm -f biopdb_faq.out
-make[2]: Leaving directory '/build/1st/python-biopython-1.68+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc'
+make[2]: Leaving directory '/build/python-biopython-1.68+dfsg/2nd/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc'
 find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete
 find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.tex" -delete
 find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete
 find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete
 find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete
-make[1]: Leaving directory '/build/1st/python-biopython-1.68+dfsg'
+make[1]: Leaving directory '/build/python-biopython-1.68+dfsg/2nd'
    dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython-biopython-sql -Npython3-biopython-sql
 	install -d debian/python-biopython/usr/share/doc/python-biopython
 	cp --reflink=auto -a CONTRIB debian/python-biopython/usr/share/doc/python-biopython
@@ -16580,23 +16597,23 @@
    dh_python3 -O--buildsystem=pybuild
 D: dh_python3 dh_python3:158: version: 2.20160818
 D: dh_python3 dh_python3:159: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
-D: dh_python3 dh_python3:160: options: {'depends': None, 'suggests': None, 'compile_all': False, 'guess_deps': True, 'no_ext_rename': False, 'requires': None, 'suggests_section': None, 'package': None, 'no_package': None, 'depends_section': None, 'O': '--buildsystem=pybuild', 'vrange': None, 'ignore_shebangs': False, 'verbose': False, 'no_shebang_rewrite': False, 'recommends_section': None, 'shebang': None, 'regexpr': None, 'recommends': None, 'clean_dbg_pkg': True, 'skip_private': False, 'arch': None}
+D: dh_python3 dh_python3:160: options: {'depends': None, 'shebang': None, 'clean_dbg_pkg': True, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild', 'vrange': None, 'depends_section': None, 'arch': None, 'skip_private': False, 'verbose': False, 'regexpr': None, 'recommends': None, 'package': None, 'recommends_section': None, 'no_package': None, 'ignore_shebangs': False, 'requires': None, 'compile_all': False, 'suggests': None, 'suggests_section': None, 'guess_deps': True, 'no_ext_rename': False}
 D: dh_python3 dh_python3:161: args: []
 D: dh_python3 dh_python3:163: supported Python versions: 3.5 (default=3.5)
 D: dh_python3 debhelper:107: skipping package: python-biopython
 D: dh_python3 debhelper:107: skipping package: python-biopython-doc
 D: dh_python3 debhelper:107: skipping package: python-biopython-sql
-D: dh_python3 debhelper:153: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql']
-D: dh_python3 dh_python3:180: processing package python3-biopython...
-D: dh_python3 fs:47: moving files from debian/python3-biopython/usr/lib/python3.5/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/
-D: dh_python3 fs:243: package python3-biopython details = {'private_dirs': {}, 'compile': True, 'public_vers': {Version('3')}, 'nsp.txt': set(), 'ext_vers': {Version('3.5')}, 'shebangs': set(), 'egg-info': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.68.egg-info'}, 'requires.txt': set(), 'ext_no_version': set()}
-D: dh_python3 depends:113: generating dependencies for package python3-biopython
-D: dh_python3 depends:269: D={'python3:any (>= 3.3~)', 'python3 (>= 3.5~)', 'python3 (<< 3.6)', 'python3:any (>= 3.3.2-2~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
+D: dh_python3 debhelper:153: source=python-biopython, binary packages=['python3-biopython-sql', 'python3-biopython']
 D: dh_python3 dh_python3:180: processing package python3-biopython-sql...
 D: dh_python3 fs:47: moving files from debian/python3-biopython-sql/usr/lib/python3.5/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/
-D: dh_python3 fs:243: package python3-biopython-sql details = {'private_dirs': {}, 'compile': True, 'public_vers': {Version('3')}, 'nsp.txt': set(), 'ext_vers': set(), 'shebangs': set(), 'egg-info': set(), 'requires.txt': set(), 'ext_no_version': set()}
+D: dh_python3 fs:243: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'ext_no_version': set(), 'compile': True, 'ext_vers': set(), 'nsp.txt': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'shebangs': set()}
 D: dh_python3 depends:113: generating dependencies for package python3-biopython-sql
-D: dh_python3 depends:269: D={'python3:any (>= 3.3~)', 'python3:any (>= 3.3.2-2~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
+D: dh_python3 depends:269: D={'python3:any (>= 3.3.2-2~)', 'python3:any (>= 3.3~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
+D: dh_python3 dh_python3:180: processing package python3-biopython...
+D: dh_python3 fs:47: moving files from debian/python3-biopython/usr/lib/python3.5/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/
+D: dh_python3 fs:243: package python3-biopython details = {'requires.txt': set(), 'egg-info': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.68.egg-info'}, 'ext_no_version': set(), 'compile': True, 'ext_vers': {Version('3.5')}, 'nsp.txt': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'shebangs': set()}
+D: dh_python3 depends:113: generating dependencies for package python3-biopython
+D: dh_python3 depends:269: D={'python3 (<< 3.6)', 'python3 (>= 3.5~)', 'python3:any (>= 3.3.2-2~)', 'python3:any (>= 3.3~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
    dh_lintian -O--buildsystem=pybuild
 	install -d debian/python-biopython-doc/usr/share/lintian/overrides
 	install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc
@@ -16607,11 +16624,11 @@
 	cd debian/python-biopython
 	chmod a-x usr/share/doc/python-biopython/CONTRIB usr/share/doc/python-biopython/DEPRECATED usr/share/doc/python-biopython/NEWS usr/share/doc/python-biopython/changelog.Debian
 	gzip -9nf usr/share/doc/python-biopython/CONTRIB usr/share/doc/python-biopython/DEPRECATED usr/share/doc/python-biopython/NEWS usr/share/doc/python-biopython/changelog.Debian
-	cd '/build/1st/python-biopython-1.68+dfsg'
+	cd '/build/python-biopython-1.68+dfsg/2nd'
 	cd debian/python3-biopython
 	chmod a-x usr/share/doc/python3-biopython/changelog.Debian
 	gzip -9nf usr/share/doc/python3-biopython/changelog.Debian
-	cd '/build/1st/python-biopython-1.68+dfsg'
+	cd '/build/python-biopython-1.68+dfsg/2nd'
 	cd debian/python-biopython-doc
 	chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md usr/share/doc/python-biopython-doc/Doc/doc.rst usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/getgene.py usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/examples/protein.aln usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf usr/share/doc/python-biopython-doc/Doc/install/Installation.pdf usr/share/doc/python-biopython-doc/Doc/install/Installation.txt usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/README.txt usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2012L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2216L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2221L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2230_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3 usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10 usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MEME/mast.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/mast.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/mast.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/MEME/meme.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/meme.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/meme.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/Motif/alignace.out usr/share/doc/python-biopython-doc/Tests/Motif/mast.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/mast.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/mast.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/Motif/meme.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/meme.out usr/share/doc/python-biopython-doc/Tests/Motif/meme.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/meme.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10\+chars.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete\+continuous.nex usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out
 	chmod a-x usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt usr/share/doc/python-biopython-doc/Tests/Phd/phd1 usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen usr/share/doc/python-biopython-doc/Tests/PopGen/data_dfst_outfile usr/share/doc/python-biopython-doc/Tests/PopGen/dfdist1 usr/share/doc/python-biopython-doc/Tests/PopGen/dout.cpl usr/share/doc/python-biopython-doc/Tests/PopGen/dout.dat usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen usr/share/doc/python-biopython-doc/Tests/PopGen/out.dat usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/sp003 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp004 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp008 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp010 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp011 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp014 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003 usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln usr/share/doc/python-biopython-doc/Tests/codonalign/drosophilla.fasta usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out usr/share/doc/python-biopython-doc/Tests/motifs/mast.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/motifs/meme.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/meme.out usr/share/doc/python-biopython-doc/Tests/motifs/meme.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/meme.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/output/test_AlignIO usr/share/doc/python-biopython-doc/Tests/output/test_AlignIO_FastaIO usr/share/doc/python-biopython-doc/Tests/output/test_Clustalw usr/share/doc/python-biopython-doc/Tests/output/test_GenBank usr/share/doc/python-biopython-doc/Tests/output/test_KEGG usr/share/doc/python-biopython-doc/Tests/output/test_PDB usr/share/doc/python-biopython-doc/Tests/output/test_SeqIO usr/share/doc/python-biopython-doc/Tests/output/test_SubsMat usr/share/doc/python-biopython-doc/Tests/output/test_align usr/share/doc/python-biopython-doc/Tests/output/test_geo usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_EmbossIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests/test_CelFile.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Crystal.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_GACrossover.py usr/share/doc/python-biopython-doc/Tests/test_GAMutation.py usr/share/doc/python-biopython-doc/Tests/test_GAOrganism.py usr/share/doc/python-biopython-doc/Tests/test_GAQueens.py usr/share/doc/python-biopython-doc/Tests/test_GASelection.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenBank_unittest.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py usr/share/doc/python-biopython-doc/Tests/test_MMCIF.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NNGene.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDB.py usr/share/doc/python-biopython-doc/Tests/test_ParserSupport.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_convert.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py
@@ -16619,15 +16636,15 @@
 	gzip -9nf usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md usr/share/doc/python-biopython-doc/Doc/doc.rst usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/getgene.py usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/examples/protein.aln usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf usr/share/doc/python-biopython-doc/Doc/install/Installation.pdf usr/share/doc/python-biopython-doc/Doc/install/Installation.txt usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/README.txt usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2012L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2216L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2221L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2230_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3 usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10 usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MEME/mast.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/mast.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/mast.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/MEME/meme.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/meme.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/MEME/meme.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/Motif/alignace.out usr/share/doc/python-biopython-doc/Tests/Motif/mast.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/mast.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/mast.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/Motif/meme.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/meme.out usr/share/doc/python-biopython-doc/Tests/Motif/meme.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/Motif/meme.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10\+chars.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete\+continuous.nex usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out
 	gzip -9nf usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt usr/share/doc/python-biopython-doc/Tests/Phd/phd1 usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen usr/share/doc/python-biopython-doc/Tests/PopGen/data_dfst_outfile usr/share/doc/python-biopython-doc/Tests/PopGen/dfdist1 usr/share/doc/python-biopython-doc/Tests/PopGen/dout.cpl usr/share/doc/python-biopython-doc/Tests/PopGen/dout.dat usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen usr/share/doc/python-biopython-doc/Tests/PopGen/out.dat usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/sp003 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp004 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp008 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp010 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp011 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp014 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003 usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln usr/share/doc/python-biopython-doc/Tests/codonalign/drosophilla.fasta usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out usr/share/doc/python-biopython-doc/Tests/motifs/mast.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/motifs/meme.dna.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/meme.out usr/share/doc/python-biopython-doc/Tests/motifs/meme.protein.oops.txt usr/share/doc/python-biopython-doc/Tests/motifs/meme.protein.tcm.txt usr/share/doc/python-biopython-doc/Tests/output/test_AlignIO usr/share/doc/python-biopython-doc/Tests/output/test_AlignIO_FastaIO usr/share/doc/python-biopython-doc/Tests/output/test_Clustalw usr/share/doc/python-biopython-doc/Tests/output/test_GenBank usr/share/doc/python-biopython-doc/Tests/output/test_KEGG usr/share/doc/python-biopython-doc/Tests/output/test_PDB usr/share/doc/python-biopython-doc/Tests/output/test_SeqIO usr/share/doc/python-biopython-doc/Tests/output/test_SubsMat usr/share/doc/python-biopython-doc/Tests/output/test_align usr/share/doc/python-biopython-doc/Tests/output/test_geo usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_EmbossIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests/test_CelFile.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Crystal.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_GACrossover.py usr/share/doc/python-biopython-doc/Tests/test_GAMutation.py usr/share/doc/python-biopython-doc/Tests/test_GAOrganism.py usr/share/doc/python-biopython-doc/Tests/test_GAQueens.py usr/share/doc/python-biopython-doc/Tests/test_GASelection.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenBank_unittest.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py usr/share/doc/python-biopython-doc/Tests/test_MMCIF.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NNGene.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDB.py usr/share/doc/python-biopython-doc/Tests/test_ParserSupport.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_convert.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py
 	gzip -9nf usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_mmtf.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise2.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests/test_trie.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_DFDist.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_FDist.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_samtools_tool.py usr/share/doc/python-biopython-doc/changelog.Debian
-	cd '/build/1st/python-biopython-1.68+dfsg'
+	cd '/build/python-biopython-1.68+dfsg/2nd'
 	cd debian/python-biopython-sql
 	chmod a-x usr/share/doc/python-biopython-sql/changelog.Debian
 	gzip -9nf usr/share/doc/python-biopython-sql/changelog.Debian
-	cd '/build/1st/python-biopython-1.68+dfsg'
+	cd '/build/python-biopython-1.68+dfsg/2nd'
 	cd debian/python3-biopython-sql
 	chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian
 	gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian
-	cd '/build/1st/python-biopython-1.68+dfsg'
+	cd '/build/python-biopython-1.68+dfsg/2nd'
    dh_fixperms -O--buildsystem=pybuild
 	find debian/python-biopython  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/python-biopython ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -16779,9 +16796,9 @@
 	rm -f debian/python3-biopython-sql/DEBIAN/shlibs
    dh_shlibdeps -O--buildsystem=pybuild
 	dpkg-shlibdeps -Tdebian/python-biopython.substvars debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/cluster.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.so
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/cluster.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.so were not linked against libpthread.so.0 (they use none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/cluster.so were not linked against libpthread.so.0 (they use none of the library's symbols)
 	dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/cluster.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-35m-x86_64-linux-gnu.so
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/cluster.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-35m-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/cluster.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-35m-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-35m-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols)
 	install -d debian/python-biopython-doc/DEBIAN
 	install -d debian/python-biopython-sql/DEBIAN
 	install -d debian/python3-biopython-sql/DEBIAN
@@ -16846,8 +16863,8 @@
 	chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/control
 	dpkg-gencontrol -ppython-biopython -ldebian/changelog -Tdebian/python-biopython.substvars -Pdebian/python-biopython
 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: package python-biopython: unused substitution variable ${python:Provides}
 dpkg-gencontrol: warning: package python-biopython: unused substitution variable ${python:Versions}
+dpkg-gencontrol: warning: package python-biopython: unused substitution variable ${python:Provides}
 	chmod 0644 -- debian/python-biopython/DEBIAN/control
 	chown 0:0 -- debian/python-biopython/DEBIAN/control
 	echo misc:Depends= >> debian/python3-biopython.substvars
@@ -16861,8 +16878,8 @@
 	chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control
 	dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython
 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: package python3-biopython: unused substitution variable ${python3:Versions}
 dpkg-gencontrol: warning: package python3-biopython: unused substitution variable ${python3:Provides}
+dpkg-gencontrol: warning: package python3-biopython: unused substitution variable ${python3:Versions}
 	chmod 0644 -- debian/python3-biopython/DEBIAN/control
 	chown 0:0 -- debian/python3-biopython/DEBIAN/control
 	echo misc:Depends= >> debian/python-biopython-doc.substvars
@@ -16908,33 +16925,35 @@
 	chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums
 	chown 0:0 -- debian/python3-biopython-sql/DEBIAN/md5sums
    dh_builddeb -O--buildsystem=pybuild
-	dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/python-biopython/dbgsym-root ..
 	dpkg-deb --build debian/python-biopython-doc ..
 	dpkg-deb --build debian/python-biopython-sql ..
+	dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/python-biopython/dbgsym-root ..
 	dpkg-deb --build debian/python3-biopython-sql ..
 	dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/python3-biopython/dbgsym-root ..
-dpkg-deb: building package 'python-biopython-dbgsym' in '../python-biopython-dbgsym_1.68+dfsg-1_amd64.deb'.
 dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.68+dfsg-1_all.deb'.
-dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.68+dfsg-1_all.deb'.
-dpkg-deb: building package 'python-biopython-sql' in '../python-biopython-sql_1.68+dfsg-1_all.deb'.
+dpkg-deb: building package 'python-biopython-dbgsym' in '../python-biopython-dbgsym_1.68+dfsg-1_amd64.deb'.
 dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.68+dfsg-1_amd64.deb'.
+dpkg-deb: building package 'python-biopython-sql' in '../python-biopython-sql_1.68+dfsg-1_all.deb'.
+dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.68+dfsg-1_all.deb'.
 	dpkg-deb --build debian/python-biopython ..
-dpkg-deb: building package 'python-biopython' in '../python-biopython_1.68+dfsg-1_amd64.deb'.
 	dpkg-deb --build debian/python3-biopython ..
+dpkg-deb: building package 'python-biopython' in '../python-biopython_1.68+dfsg-1_amd64.deb'.
 dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.68+dfsg-1_amd64.deb'.
  dpkg-genbuildinfo --build=binary
 dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
  dpkg-genchanges --build=binary >../python-biopython_1.68+dfsg-1_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build python-biopython-1.68+dfsg
+ dpkg-source --after-build 2nd
 dpkg-buildpackage: info: binary-only upload (no source included)
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/46204/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/46204/tmp/hooks/B01_cleanup finished
 I: unmounting /dev/shm filesystem
 I: unmounting dev/pts filesystem
 I: unmounting run/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/45495 and its subdirectories
-I: Current time: Thu Jan  5 15:38:14 -12 2017
-I: pbuilder-time-stamp: 1483673894
+I: removing directory /srv/workspace/pbuilder/46204 and its subdirectories
+I: Current time: Fri Feb  9 00:21:41 +14 2018
+I: pbuilder-time-stamp: 1518085301
Starting cleanup.
/srv/reproducible-results/rbuild-debian-bjZwN3EY/tmp.yRnQSL8ocZ:	 93.0% -- replaced with /srv/reproducible-results/rbuild-debian-bjZwN3EY/tmp.yRnQSL8ocZ.gz
INFO: Starting at 2017-01-06 03:58:45.148027
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/python-biopython_1.68+dfsg-1_amd64.buildinfo
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/python-biopython didn't produce a buildlog, even though it has been built.
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/python-biopython is unreproducible, but without diffoscope output.
INFO: Finished at 2017-01-06 03:58:45.482458, took: 0:00:00.334452
All cleanup done.
Fri  6 Jan 03:58:45 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-iluVXlc3, which will now be removed.
Build step 'Execute shell' marked build as failure