[Qa-jenkins-scm] Build failed in Jenkins: reproducible_html_dashboard #200331
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Jun 11 10:03:20 BST 2023
See <https://jenkins.debian.net/job/reproducible_html_dashboard/200331/display/redirect>
Changes:
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[...truncated 4.84 KB...]
Generating unstable/arm64/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:01:42 UTC 2023 - starting to write index_suite_arm64_stats.html page.
Sun Jun 11 09:01:43 UTC 2023 - 'index_suite_arm64_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/unstable/index_suite_arm64_stats.html'
Sun Jun 11 09:01:43 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/unstable/index_suite_arm64_stats.html
Checking whether to update trixie/arm64/stats_buildinfo.png...
Updating trixie/arm64/stats_buildinfo.png...
Generating trixie/arm64/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:01:48 UTC 2023 - starting to write index_suite_arm64_stats.html page.
Sun Jun 11 09:01:49 UTC 2023 - 'index_suite_arm64_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/trixie/index_suite_arm64_stats.html'
Sun Jun 11 09:01:49 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/trixie/index_suite_arm64_stats.html
Checking whether to update bookworm/arm64/stats_buildinfo.png...
Updating bookworm/arm64/stats_buildinfo.png...
Generating bookworm/arm64/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:01:54 UTC 2023 - starting to write index_suite_arm64_stats.html page.
Sun Jun 11 09:01:55 UTC 2023 - 'index_suite_arm64_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/bookworm/index_suite_arm64_stats.html'
Sun Jun 11 09:01:55 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/bookworm/index_suite_arm64_stats.html
Checking whether to update bullseye/arm64/stats_buildinfo.png...
Updating bullseye/arm64/stats_buildinfo.png...
Generating bullseye/arm64/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Checking whether to update buster/arm64/stats_buildinfo.png...
Updating buster/arm64/stats_buildinfo.png...
Generating buster/arm64/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Checking whether to update experimental/arm64/stats_buildinfo.png...
Updating experimental/arm64/stats_buildinfo.png...
Generating experimental/arm64/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:07 UTC 2023 - starting to write index_suite_arm64_stats.html page.
Sun Jun 11 09:02:08 UTC 2023 - 'index_suite_arm64_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/experimental/index_suite_arm64_stats.html'
Sun Jun 11 09:02:08 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/experimental/index_suite_arm64_stats.html
Checking whether to update unstable/armhf/stats_buildinfo.png...
Updating unstable/armhf/stats_buildinfo.png...
Generating unstable/armhf/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:13 UTC 2023 - starting to write index_suite_armhf_stats.html page.
Sun Jun 11 09:02:14 UTC 2023 - 'index_suite_armhf_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/unstable/index_suite_armhf_stats.html'
Sun Jun 11 09:02:14 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/unstable/index_suite_armhf_stats.html
Checking whether to update trixie/armhf/stats_buildinfo.png...
Updating trixie/armhf/stats_buildinfo.png...
Generating trixie/armhf/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:19 UTC 2023 - starting to write index_suite_armhf_stats.html page.
Sun Jun 11 09:02:20 UTC 2023 - 'index_suite_armhf_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/trixie/index_suite_armhf_stats.html'
Sun Jun 11 09:02:20 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/trixie/index_suite_armhf_stats.html
Checking whether to update bookworm/armhf/stats_buildinfo.png...
Updating bookworm/armhf/stats_buildinfo.png...
Generating bookworm/armhf/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:25 UTC 2023 - starting to write index_suite_armhf_stats.html page.
Sun Jun 11 09:02:26 UTC 2023 - 'index_suite_armhf_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/bookworm/index_suite_armhf_stats.html'
Sun Jun 11 09:02:26 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/bookworm/index_suite_armhf_stats.html
Checking whether to update bullseye/armhf/stats_buildinfo.png...
Updating bullseye/armhf/stats_buildinfo.png...
Generating bullseye/armhf/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Checking whether to update buster/armhf/stats_buildinfo.png...
Updating buster/armhf/stats_buildinfo.png...
Generating buster/armhf/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Checking whether to update experimental/armhf/stats_buildinfo.png...
Updating experimental/armhf/stats_buildinfo.png...
Generating experimental/armhf/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:41 UTC 2023 - starting to write index_suite_armhf_stats.html page.
Sun Jun 11 09:02:42 UTC 2023 - 'index_suite_armhf_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/experimental/index_suite_armhf_stats.html'
Sun Jun 11 09:02:42 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/experimental/index_suite_armhf_stats.html
Checking whether to update unstable/i386/stats_buildinfo.png...
Updating unstable/i386/stats_buildinfo.png...
Generating unstable/i386/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:47 UTC 2023 - starting to write index_suite_i386_stats.html page.
Sun Jun 11 09:02:48 UTC 2023 - 'index_suite_i386_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/unstable/index_suite_i386_stats.html'
Sun Jun 11 09:02:48 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/unstable/index_suite_i386_stats.html
Checking whether to update trixie/i386/stats_buildinfo.png...
Updating trixie/i386/stats_buildinfo.png...
Generating trixie/i386/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:53 UTC 2023 - starting to write index_suite_i386_stats.html page.
Sun Jun 11 09:02:54 UTC 2023 - 'index_suite_i386_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/trixie/index_suite_i386_stats.html'
Sun Jun 11 09:02:54 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/trixie/index_suite_i386_stats.html
Checking whether to update bookworm/i386/stats_buildinfo.png...
Updating bookworm/i386/stats_buildinfo.png...
Generating bookworm/i386/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:02:59 UTC 2023 - starting to write index_suite_i386_stats.html page.
Sun Jun 11 09:03:00 UTC 2023 - 'index_suite_i386_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/bookworm/index_suite_i386_stats.html'
Sun Jun 11 09:03:00 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/bookworm/index_suite_i386_stats.html
Checking whether to update bullseye/i386/stats_buildinfo.png...
Updating bullseye/i386/stats_buildinfo.png...
Generating bullseye/i386/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Checking whether to update buster/i386/stats_buildinfo.png...
Updating buster/i386/stats_buildinfo.png...
Generating buster/i386/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Checking whether to update experimental/i386/stats_buildinfo.png...
Updating experimental/i386/stats_buildinfo.png...
Generating experimental/i386/stats_buildinfo.png.
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Sun Jun 11 09:03:14 UTC 2023 - starting to write index_suite_i386_stats.html page.
Sun Jun 11 09:03:15 UTC 2023 - 'index_suite_i386_stats.html' -> '/var/lib/jenkins/userContent/reproducible/debian/experimental/index_suite_i386_stats.html'
Sun Jun 11 09:03:15 UTC 2023 - enjoy https://tests.reproducible-builds.org/debian/experimental/index_suite_i386_stats.html
Sun Jun 11 09:03:15 UTC 2023 - starting to write index_performance.html page.
Checking whether to update stats_builds_per_day_amd64.png...
Updating stats_builds_per_day_amd64.png...
Generating stats_builds_per_day_amd64.png.
R[write to console]: Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 1 did not have 29 elements
R[write to console]: In addition:
R[write to console]: Warning message:
R[write to console]: In (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE, :
R[write to console]:
R[write to console]: libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages
Traceback (most recent call last):
File "/srv/jenkins/bin/make_graph.py", line 78, in <module>
main()
File "/srv/jenkins/bin/make_graph.py", line 30, in main
r('t <- (read.table("'+countsfile+'",sep=",",header=1,row.names=1))')
File "/usr/lib/python3/dist-packages/rpy2/robjects/__init__.py", line 438, in __call__
res = self.eval(p)
File "/usr/lib/python3/dist-packages/rpy2/robjects/functions.py", line 198, in __call__
return (super(SignatureTranslatedFunction, self)
File "/usr/lib/python3/dist-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/usr/lib/python3/dist-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/usr/lib/python3/dist-packages/rpy2/rinterface.py", line 677, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 1 did not have 29 elements
Sun Jun 11 09:03:20 UTC 2023 - reproducible_html_dashboard.sh stopped running as /tmp/jenkins-script-pSNdK35Q, removing.
Build step 'Execute shell' marked build as failure
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