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<p class="MsoNormal">Apologies for my delayed response. We will investigate this and try to fix it soon.<o:p></o:p></p>
<p class="MsoNormal">Regards<o:p></o:p></p>
<p class="MsoNormal">Wei<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:"Times New Roman",serif;color:black">Professor Wei Shi, PhD<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Times New Roman",serif;color:black">Head, Bioinformatics and Cancer Genomics Laboratory<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Times New Roman",serif;color:black">Olivia Newton-John Cancer Research Institute<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Times New Roman",serif;color:black">Level 5, ONJ Centre, 145 Studley Road, Heidelberg Vic 3084 Australia<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Times New Roman",serif;color:black">E: Wei.Shi@onjcri.org.au | W: www.onjcri.org.au<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Times New Roman",serif;color:black"><img width="220" height="85" style="width:2.2916in;height:.8854in" id="Picture_x0020_1" src="cid:image001.png@01D691D6.64127B50" alt="signature_1837665025"></span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">Andreas Tille <tille@debian.org><br>
<b>Date: </b>Wednesday, 23 September 2020 at 5:40 pm<br>
<b>To: </b>"966523@bugs.debian.org" <966523@bugs.debian.org>, Wei Shi <Wei.Shi@onjcri.org.au>, Yang Liao <Yang.Liao@onjcri.org.au>, Gordon K Smyth <smyth@wehi.edu.au><br>
<b>Cc: </b>Debian Mentors List <debian-mentors@lists.debian.org>, Shayan Doust <hello@shayandoust.me><br>
<b>Subject: </b>Potential gcc-10 issue "error: conflicting types for ‘uintptr_t’" (Was: Bug#966523: r-bioc-rsubread FTBFS on 32bit: error: conflicting types for ‘uintptr_t’)<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Control: tags -1 help<o:p></o:p></p>
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<p class="MsoNormal">Control: tags -1 upstream<o:p></o:p></p>
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<p class="MsoNormal">Control: forwarded -1 Wei Shi <<a href="mailto:wei.shi@onjcri.org.au">wei.shi@onjcri.org.au</a>>, Yang Liao <<a href="mailto:yang.liao@onjcri.org.au">yang.liao@onjcri.org.au</a>>, Gordon K Smyth <<a href="mailto:smyth@wehi.edu.au">smyth@wehi.edu.au</a>><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">unfortunately upstream has not yet responded to this mail. My guess is<o:p></o:p></p>
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<p class="MsoNormal">that this is a general gcc-10 issue.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Any hint how to solve this?<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Kind regards<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Andreas.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Tue, Sep 08, 2020 at 05:00:10PM +0200, Andreas Tille wrote:<o:p></o:p></p>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
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<p class="MsoNormal">I'm hereby forwarding a problem that was detected on the Debian packaged<o:p></o:p></p>
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<p class="MsoNormal">version of Rsubread. Any idea how to fix this?<o:p></o:p></p>
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<p class="MsoNormal">Kind regards<o:p></o:p></p>
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<p class="MsoNormal"> Andreas.<o:p></o:p></p>
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<p class="MsoNormal">On Thu, Jul 30, 2020 at 08:50:31AM +0300, Adrian Bunk wrote:<o:p></o:p></p>
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<p class="MsoNormal">> Source: r-bioc-rsubread<o:p></o:p></p>
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<p class="MsoNormal">> Version: 2.2.5-1<o:p></o:p></p>
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<p class="MsoNormal">> Severity: serious<o:p></o:p></p>
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<p class="MsoNormal">> Tags: ftbfs<o:p></o:p></p>
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<p class="MsoNormal">> <o:p></o:p></p>
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<p class="MsoNormal">> <a href="https://buildd.debian.org/status/package.php?p=r-bioc-rsubread&suite=sid">
https://buildd.debian.org/status/package.php?p=r-bioc-rsubread&suite=sid</a><o:p></o:p></p>
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<p class="MsoNormal">> <o:p></o:p></p>
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<p class="MsoNormal">> ...<o:p></o:p></p>
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<p class="MsoNormal">> In file included from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9,<o:p></o:p></p>
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<p class="MsoNormal">> from HelperFunctions.h:139,<o:p></o:p></p>
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<p class="MsoNormal">> from R_wrapper.c:35:<o:p></o:p></p>
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<p class="MsoNormal">> /usr/include/stdint.h:96:23: error: conflicting types for ‘uintptr_t’<o:p></o:p></p>
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<p class="MsoNormal">> 96 | typedef unsigned int uintptr_t;<o:p></o:p></p>
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<p class="MsoNormal">> | ^~~~~~~~~<o:p></o:p></p>
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<p class="MsoNormal">> In file included from R_wrapper.c:30:<o:p></o:p></p>
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<p class="MsoNormal">> /usr/share/R/include/Rinterface.h:110:24: note: previous declaration of ‘uintptr_t’ was here<o:p></o:p></p>
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<p class="MsoNormal">> 110 | typedef unsigned long uintptr_t;<o:p></o:p></p>
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<p class="MsoNormal">> | ^~~~~~~~~<o:p></o:p></p>
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<p class="MsoNormal">> make[1]: *** [/usr/lib/R/etc/Makeconf:167: R_wrapper.o] Error 1<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">-- <o:p></o:p></p>
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<p class="MsoNormal"><a href="http://fam-tille.de">http://fam-tille.de</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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This communication is intended only for the named recipient and may contain information that is confidential, legally privileged or subject to copyright; the Olivia Newton-John Cancer Research Institute does not waiver any rights if you have received this communication in error. The views expressed in this communication are those of the sender and do not necessarily reflect the views of the Olivia Newton-John Cancer Research Institute.<BR>
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