<div dir="ltr">close #982622</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Feb 17, 2021 at 7:09 AM Debian Bug Tracking System <<a href="mailto:owner@bugs.debian.org">owner@bugs.debian.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Your message dated Wed, 17 Feb 2021 07:04:35 +0000<br>
with message-id <<a href="mailto:E1lCGt1-00076R-Hp@fasolo.debian.org" target="_blank">E1lCGt1-00076R-Hp@fasolo.debian.org</a>><br>
and subject line Bug#982622: fixed in r-cran-matrixstats 0.58.0-2<br>
has caused the Debian Bug report #982622,<br>
regarding r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<< 1.2.1)<br>
to be marked as done.<br>
<br>
This means that you claim that the problem has been dealt with.<br>
If this is not the case it is now your responsibility to reopen the<br>
Bug report if necessary, and/or fix the problem forthwith.<br>
<br>
(NB: If you are a system administrator and have no idea what this<br>
message is talking about, this may indicate a serious mail system<br>
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immediately.)<br>
<br>
<br>
-- <br>
982622: <a href="https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982622" rel="noreferrer" target="_blank">https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982622</a><br>
Debian Bug Tracking System<br>
Contact <a href="mailto:owner@bugs.debian.org" target="_blank">owner@bugs.debian.org</a> with problems<br>
<br><br><br>---------- Forwarded message ----------<br>From: Adrian Bunk <<a href="mailto:bunk@debian.org" target="_blank">bunk@debian.org</a>><br>To: Debian Bug Tracking System <<a href="mailto:submit@bugs.debian.org" target="_blank">submit@bugs.debian.org</a>><br>Cc: <br>Bcc: <br>Date: Fri, 12 Feb 2021 17:21:54 +0200<br>Subject: r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<< 1.2.1)<br>Package: r-cran-matrixstats<br>
Version: 0.58.0-1<br>
Severity: serious<br>
<br>
<a href="https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-matrixgenerics/10405220/log.gz" rel="noreferrer" target="_blank">https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-matrixgenerics/10405220/log.gz</a><br>
<br>
...<br>
> test_check("MatrixGenerics")<br>
══ Failed tests ════════════════════════════════════════════════════════════════<br>
── Failure (test-api_compatibility.R:89:2): colAvgsPerRowSet works ────────────<br>
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.<br>
Names: 1 string mismatch<br>
Length mismatch: comparison on first 7 components<br>
Component 7: 'is.NA' value mismatch: 0 in current 1 in target<br>
── Error (test-api_compatibility.R:360:2): colMads works ──────────────────────<br>
Error: Argument 'center' should be of the same length as number of columns of 'x': 6 != 8<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::colMads(...) test-api_compatibility.R:360:8<br>
2. └─MatrixGenerics::colMads(...)<br>
3. └─MatrixGenerics:::.local(...)<br>
4. └─matrixStats::colMads(...)<br>
── Error (test-api_compatibility.R:593:2): colSds works ───────────────────────<br>
Error: Argument 'center' should be of the same length as number of columns of 'x': 6 != 8<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::colSds(...) test-api_compatibility.R:593:8<br>
2. └─MatrixGenerics::colSds(...)<br>
3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)<br>
4. └─matrixStats::colSds(...)<br>
5. └─matrixStats::colVars(...)<br>
── Error (test-api_compatibility.R:678:2): colVars works ──────────────────────<br>
Error: Argument 'center' should be of the same length as number of columns of 'x': 6 != 8<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::colVars(...) test-api_compatibility.R:678:8<br>
2. └─MatrixGenerics::colVars(...)<br>
3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)<br>
4. └─matrixStats::colVars(...)<br>
── Error (test-api_compatibility.R:698:2): colWeightedMads works ──────────────<br>
Error: Argument 'center' should be of the same length as number of columns of 'x': 1 != 6<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::colWeightedMads(...) test-api_compatibility.R:698:8<br>
2. └─MatrixGenerics::colWeightedMads(...)<br>
3. └─matrixStats::colWeightedMads(...)<br>
── Failure (test-api_compatibility.R:856:2): rowAvgsPerColSet works ───────────<br>
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.<br>
Names: 1 string mismatch<br>
Length mismatch: comparison on first 7 components<br>
Component 7: 'is.NA' value mismatch: 0 in current 1 in target<br>
── Error (test-api_compatibility.R:1127:2): rowMads works ─────────────────────<br>
Error: Argument 'center' should be of the same length as number of rows of 'x': 16 != 12<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::rowMads(...) test-api_compatibility.R:1127:8<br>
2. └─MatrixGenerics::rowMads(...)<br>
3. └─MatrixGenerics:::.local(...)<br>
4. └─matrixStats::rowMads(...)<br>
── Error (test-api_compatibility.R:1360:2): rowSds works ──────────────────────<br>
Error: Argument 'center' should be of the same length as number of rows of 'x': 16 != 12<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::rowSds(...) test-api_compatibility.R:1360:8<br>
2. └─MatrixGenerics::rowSds(...)<br>
3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)<br>
4. └─matrixStats::rowSds(...)<br>
5. └─matrixStats::rowVars(...)<br>
── Error (test-api_compatibility.R:1445:2): rowVars works ─────────────────────<br>
Error: Argument 'center' should be of the same length as number of rows of 'x': 16 != 12<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::rowVars(...) test-api_compatibility.R:1445:8<br>
2. └─MatrixGenerics::rowVars(...)<br>
3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)<br>
4. └─matrixStats::rowVars(...)<br>
── Error (test-api_compatibility.R:1466:2): rowWeightedMads works ─────────────<br>
Error: Argument 'center' should be of the same length as number of rows of 'x': 1 != 6<br>
Backtrace:<br>
█<br>
1. ├─MatrixGenerics::rowWeightedMads(...) test-api_compatibility.R:1466:8<br>
2. └─MatrixGenerics::rowWeightedMads(...)<br>
3. └─matrixStats::rowWeightedMads(...)<br>
<br>
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 300 ]<br>
Error: Test failures<br>
Execution halted<br>
autopkgtest [18:11:11]: test pkg-r-autopkgtest: -----------------------]<br>
autopkgtest [18:11:11]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - -<br>
pkg-r-autopkgtest FAIL non-zero exit status 1<br>
autopkgtest [18:11:11]: @@@@@@@@@@@@@@@@@@@@ summary<br>
run-unit-test FAIL non-zero exit status 1<br>
pkg-r-autopkgtest FAIL non-zero exit status 1<br>
<br><br><br>---------- Forwarded message ----------<br>From: Debian FTP Masters <<a href="mailto:ftpmaster@ftp-master.debian.org" target="_blank">ftpmaster@ftp-master.debian.org</a>><br>To: <a href="mailto:982622-close@bugs.debian.org" target="_blank">982622-close@bugs.debian.org</a><br>Cc: <br>Bcc: <br>Date: Wed, 17 Feb 2021 07:04:35 +0000<br>Subject: Bug#982622: fixed in r-cran-matrixstats 0.58.0-2<br>Source: r-cran-matrixstats<br>
Source-Version: 0.58.0-2<br>
Done: Andreas Tille <<a href="mailto:tille@debian.org" target="_blank">tille@debian.org</a>><br>
<br>
We believe that the bug you reported is fixed in the latest version of<br>
r-cran-matrixstats, which is due to be installed in the Debian FTP archive.<br>
<br>
A summary of the changes between this version and the previous one is<br>
attached.<br>
<br>
Thank you for reporting the bug, which will now be closed. If you<br>
have further comments please address them to <a href="mailto:982622@bugs.debian.org" target="_blank">982622@bugs.debian.org</a>,<br>
and the maintainer will reopen the bug report if appropriate.<br>
<br>
Debian distribution maintenance software<br>
pp.<br>
Andreas Tille <<a href="mailto:tille@debian.org" target="_blank">tille@debian.org</a>> (supplier of updated r-cran-matrixstats package)<br>
<br>
(This message was generated automatically at their request; if you<br>
believe that there is a problem with it please contact the archive<br>
administrators by mailing <a href="mailto:ftpmaster@ftp-master.debian.org" target="_blank">ftpmaster@ftp-master.debian.org</a>)<br>
<br>
<br>
-----BEGIN PGP SIGNED MESSAGE-----<br>
Hash: SHA512<br>
<br>
Format: 1.8<br>
Date: Wed, 17 Feb 2021 07:36:50 +0100<br>
Source: r-cran-matrixstats<br>
Architecture: source<br>
Version: 0.58.0-2<br>
Distribution: unstable<br>
Urgency: medium<br>
Maintainer: Debian R Packages Maintainers <<a href="mailto:r-pkg-team@alioth-lists.debian.net" target="_blank">r-pkg-team@alioth-lists.debian.net</a>><br>
Changed-By: Andreas Tille <<a href="mailto:tille@debian.org" target="_blank">tille@debian.org</a>><br>
Closes: 982622<br>
Changes:<br>
r-cran-matrixstats (0.58.0-2) unstable; urgency=medium<br>
.<br>
* Breaks: r-bioc-matrixgenerics (<< 1.2.1)<br>
Closes: #982622<br>
Checksums-Sha1:<br>
326fcc8f8347a76a18a2d48ac91f0bcc77d1ffc1 2154 r-cran-matrixstats_0.58.0-2.dsc<br>
6fc5d8cea8ee715876058c17a2b1feb2ed046ea4 4280 r-cran-matrixstats_0.58.0-2.debian.tar.xz<br>
e6b47a7c429b31d36ad877a4998b368a7b5d9546 10535 r-cran-matrixstats_0.58.0-2_amd64.buildinfo<br>
Checksums-Sha256:<br>
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129e87e5d25a9d90e303092e09e08a2ef6eea402f8eb3f5dea931f93c27cbb33 4280 r-cran-matrixstats_0.58.0-2.debian.tar.xz<br>
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Files:<br>
8e1ab3937eeacc7e6d2366920bea181a 2154 gnu-r optional r-cran-matrixstats_0.58.0-2.dsc<br>
6d346f3c2e53f99e074603a23ccad04f 4280 gnu-r optional r-cran-matrixstats_0.58.0-2.debian.tar.xz<br>
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<br>
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