From b653667f62a3dcc6331e6d68f06b1c584c30348e Mon Sep 17 00:00:00 2001 From: Michael Prokop Date: Fri, 20 Jun 2025 18:34:57 +0200 Subject: Apply workaround for boost/BH usage Message-ID: <2025-06-20T19-49-03@devnull.michael-prokop.at> Otherwise, the BH package fails its check for the boost library: | Error in stan_model(model_code = stancode, verbose = TRUE) : | Boost not found; call install.packages('BH') Thanks: Dirk Eddelbuettel for debugging assistance + initial patch Closes: #1108078 --- debian/patches/bh_1108078.patch | 32 ++++++++++++++++++++++++++++++++ debian/patches/series | 1 + 2 files changed, 33 insertions(+) create mode 100644 debian/patches/bh_1108078.patch diff --git a/debian/patches/bh_1108078.patch b/debian/patches/bh_1108078.patch new file mode 100644 index 0000000..5b5c059 --- /dev/null +++ b/debian/patches/bh_1108078.patch @@ -0,0 +1,32 @@ +Description: Disable check for boost lib to work around #1108078 +Last-Update: 2025-06-20 +--- + +diff --git R/options.R R/options.R +index 5a6a845..61f3922 100644 +--- a/R/options.R ++++ b/R/options.R +@@ -65,7 +65,7 @@ init_rstan_opt_env <- function(e) { + # boost_dir <- dir(stan_lib_path, pattern = 'boost.*') + # boost lib path + # boost_lib_path <- file.path(stan_lib_path, boost_dir) +- boost_lib_path <- system.file('include', package = 'BH') ++ boost_lib_path <- "" # system.file('include', package = 'BH') + eigen_lib_path <- system.file('include', package = 'RcppEigen') + # eigen_dir <- dir(stan_lib_path, pattern = 'eigen.*') + # eigen_lib_path <- file.path(stan_lib_path, eigen_dir) +diff --git R/rstan.R R/rstan.R +index 89a0d89..5dec7a7 100644 +--- a/R/rstan.R ++++ b/R/rstan.R +@@ -149,8 +149,8 @@ stan_model <- function(file, + old.boost_lib <- rstan_options(boost_lib = boost_lib) + on.exit(rstan_options(boost_lib = old.boost_lib)) + } +- if (!file.exists(rstan_options("boost_lib"))) +- stop("Boost not found; call install.packages('BH')") ++# if (!file.exists(rstan_options("boost_lib"))) ++# stop("Boost not found; call install.packages('BH')") + + if (!is.null(eigen_lib)) { + old.eigen_lib <- rstan_options(eigen_lib = eigen_lib) diff --git a/debian/patches/series b/debian/patches/series index 8127843..584d9e4 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,3 +1,4 @@ fix_library_locations.patch unversioned_bh.patch remove-stanheaders-in-deps.patch +bh_1108078.patch -- 2.50.0