[From nobody Sun Aug 2 23:51:12 2026 Received: (at submit) by bugs.debian.org; 1 Aug 2026 22:37:56 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-122.4 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FROMDEVELOPER,HAS_PACKAGE, PP_MIME_FAKE_ASCII_TEXT,USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 18; hammy, 150; neutral, 106; spammy, 0. spammytokens: hammytokens:0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--HTo:N*Debian, 0.000-+--forky, 0.000-+--H*F:U*sanvila Return-path: <sanvila@debian.org> Received: from muffat.debian.org ([2607:f8f0:614:1::1274:33]:37852) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wqIL6-006lzf-0i for submit@bugs.debian.org; Sat, 01 Aug 2026 22:37:56 +0000 Received: via submission from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by muffat.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wqIL6-00FMei-0S for submit@bugs.debian.org; Sat, 01 Aug 2026 22:37:56 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Subject:To:From:Reply-To:Cc: MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=SPAxnh52ErhxhKdVdK+MKZikECnwSOdjdE/0z7PEy+0=; b=p2zRpypB1Reyi01Zo4ANzwqfXv ljkmnCHmQurx8HrEkgAZGAqh/DDP5K38JpGLlBeIfMJg8Na5yJJ8muGKFEJx65GHw2mASWxPXPLTL gloSyOMSEMnJD3LVRbOzVTrGQSWrx4GxPNk0n6EYzQbsLkW1QDp5rGfu1RwrhCtEFERJVk/ZLF2aN aEoYfcZUm07PqCuxSkroygW06X+IGz1wGdb33V6I4vSOhOAH2HGy7JprJ6u5HBDfsu1/Avul91p/D UDl5xp1LOsg+5AFRUYbn/+mAiZVz177FfVfhFqnR6YLkIKS73+jVtUZbD3mFypUC5SxhY53Uu1hUd x4elDI2w==; Received: from sanvila by paradis.debian.org with local (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wqIL6-00DZOV-06 for submit@bugs.debian.org; Sat, 01 Aug 2026 22:37:56 +0000 From: Santiago Vila <sanvila@debian.org> To: Debian BTS <submit@bugs.debian.org> Subject: r-bioc-basilisk: FTBFS: dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 13 Mar 2026 10:49:14 +0900'" returned exit code 1 X-Debbugs-Cc: sanvila@debian.org Message-Id: <E1wqIL6-00DZOV-06@paradis.debian.org> Date: Sat, 01 Aug 2026 22:37:56 +0000 Delivered-To: submit@bugs.debian.org Package: src:r-bioc-basilisk Version: 1.18.0+ds-3 Severity: serious Tags: ftbfs forky sid Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:r-bioc-basilisk, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-basilisk/ -O--buildsystem=R I: R Package: basilisk Version: 1.18.0 I: Building using R version 4.6.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 13 Mar 2026 10:49:14 +0900 mkdir -p /<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 13 Mar 2026 10:49:14 +0900'" * installing *source* package ‘basilisk’ ... ** this is package ‘basilisk’ version ‘1.18.0’ file ‘inst/doc/motivation.html’ is missing file ‘tests/testthat/test-install.R’ has the wrong MD5 checksum ** using non-staged installation via StagedInstall field Error: 'useSystemDir' is not an exported object from 'namespace:basilisk.utils' Execution halted ERROR: configuration failed for package ‘basilisk’ * removing ‘/<<PKGBUILDDIR>>/debian/r-bioc-basilisk/usr/lib/R/site-library/basilisk’ dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 13 Mar 2026 10:49:14 +0900'" returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]