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Subject: Re: r-bioc-ioniser: FTBFS: Detected bibliography in YAML (IONiseR.md)
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Version: 2.35.0+dfsg-2

Hi Santiago,

Last source upload built find on Debian's buildds therefore closing this 
bug.

Thanks for your screen,

Charles

On Sun, 17 May 2026 10:48:37 +0000 Santiago Vila &lt;sanvila@debian.org&gt; wrote:
&gt; Package: src:r-bioc-ioniser
&gt; Version: 2.30.0+dfsg-3
&gt; Severity: serious
&gt; Tags: ftbfs forky sid
&gt; 
&gt; Dear maintainer:
&gt; 
&gt; During a rebuild of all packages in unstable, this package failed to build.
&gt; 
&gt; Below you will find the last part of the build log (probably the most
&gt; relevant part, but not necessarily). If required, the full build log
&gt; is available here:
&gt; 
&gt; https://people.debian.org/~sanvila/build-logs/202605/
&gt; 
&gt; About the archive rebuild: The build was made on virtual machines from AWS,
&gt; using sbuild and a reduced chroot with only build-essential packages.
&gt; 
&gt; If you cannot reproduce the bug please contact me privately, as I
&gt; am willing to provide ssh access to a virtual machine where the bug is
&gt; fully reproducible.
&gt; 
&gt; If this is really a bug in one of the build-depends, please use
&gt; reassign and add an affects on src:r-bioc-ioniser, so that this is still
&gt; visible in the BTS web page for this package.
&gt; 
&gt; Thanks.
&gt; 
&gt; --------------------------------------------------------------------------------
&gt; [...]
&gt;  debian/rules clean
&gt; dh clean --buildsystem R
&gt;    dh_auto_clean -O--buildsystem=R
&gt;    dh_autoreconf_clean -O--buildsystem=R
&gt;    dh_clean -O--buildsystem=R
&gt;  debian/rules binary
&gt; dh binary --buildsystem R
&gt;    dh_update_autotools_config -O--buildsystem=R
&gt;    dh_autoreconf -O--buildsystem=R
&gt;    dh_auto_configure -O--buildsystem=R
&gt;    dh_auto_build -O--buildsystem=R
&gt;    debian/rules execute_after_dh_auto_build
&gt; make[1]: Entering directory '/&lt;&lt;PKGBUILDDIR&gt;&gt;'
&gt; cd inst/doc &amp;&amp; Rscript -e &quot;require(knitr); require(markdown); knit('IONiseR.Rmd', 'IONiseR.md'); markdownToHTML('IONiseR.md', 'IONiseR.html', options=c('use_xhtml', 'base64_images'));&quot; &amp;&amp; rm -f IONiseR.md
&gt; Loading required package: knitr
&gt; Loading required package: markdown
&gt; 
&gt; 
&gt; processing file: IONiseR.Rmd
&gt; 1/37                      
&gt; 2/37 [style]              
&gt; 3/37                      
&gt; 4/37 [loadLibs]           
&gt; 5/37                      
&gt; 6/37 [readData]           
&gt; 7/37                      
&gt; 8/37 [loadData]           
&gt; 9/37                      
&gt; 10/37 [exampleData]        
&gt; 11/37                      

-- 
Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.plessy@oist.jp
Okinawa  Institute  of  Science  and  Technology  Graduate  University
Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu
Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy]