[From nobody Mon Sep 28 03:37:08 2026 Received: (at submit) by bugs.debian.org; 17 Sep 2026 23:44:59 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-121.1 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FROMDEVELOPER,HAS_PACKAGE, SPF_HELO_NONE,SPF_PASS,USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 28; hammy, 150; neutral, 166; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <sanvila@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:34076) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1x7Lml-000t9I-2m for submit@bugs.debian.org; Thu, 17 Sep 2026 23:44:59 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Content-Transfer-Encoding:Content-Type :To:Subject:From:MIME-Version:Date:Message-ID:Reply-To:Cc:Content-ID: Content-Description:In-Reply-To:References; bh=DE6Qc4Ai3XYU0bWc6JhmKz+hXm/kxq0GUYmCq3X0BWk=; b=jyeQSgKuiWjauf15cItJbuKEvS PWhzdGDAqvSphVdHwOgFX03RDZCW9AZs6zZkhSCy9cXiaZ5rnrdlwbt+IgiZxEhBhuPsu8psP7VY1 Zw5uiFQxjMKA5E1cKmH84eppTUpd5g8RQQyifLYT6+L+4gvrEPs6isW/S/hQASN5fO/SBhX0+WrkC NFY2X9bbL4f7XGGKWSS+6slAStjmzXOBtv3OWeIKPGIxuxK72KwQonEoGUUNE42zuZxDn0FsYKouN 6eX0aJPS4PyS8RTrv0jRaxi2ztsjYVpk+AqwCPQCR/9RP+xmEAMJq7ShqfoGyySFL8St+a8wmyZWe yNW/E2uQ==; Received: from authenticated-user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_X25519__RSA_PSS_RSAE_SHA256__AES_128_GCM:128) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1x7Lmk-006J2P-0d for submit@bugs.debian.org; Thu, 17 Sep 2026 23:44:58 +0000 Message-ID: <cf009a80-02df-443a-9f36-bbb6f4b2f2d3@debian.org> Date: Fri, 18 Sep 2026 01:44:57 +0200 MIME-Version: 1.0 User-Agent: Mozilla Thunderbird From: Santiago Vila <sanvila@debian.org> Subject: r-bioc-alabaster.base: FTBFS: collect2: error: ld returned 1 exit status To: Debian BTS <submit@bugs.debian.org> Content-Language: en-US X-Debbugs-Cc: sanvila@debian.org Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 8bit X-Debian-User: sanvila Delivered-To: submit@bugs.debian.org Package: src:r-bioc-alabaster.base Version: 1.12.1+dfsg-1 Severity: serious Tags: ftbfs forky sid Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202609/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:r-bioc-alabaster.base, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] x86_64-linux-gnu-g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/assorthead/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c vls.cpp -o vls.o x86_64-linux-gnu-g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o alabaster.base.so RcppExports.o check_csv.o check_list.o choose_numeric_missing_placeholder.o is_rfc3339.o load_csv.o load_list.o validate.o vls.o /usr/lib/R/site-library/Rhdf5lib/lib/libhdf5_cpp.a /usr/lib/R/site-library/Rhdf5lib/lib/libhdf5.a -L/usr/lib/R/site-library/Rhdf5lib/lib -lsz -lm -ldl -lcurl -lssl -lcrypto -lz -L/usr/lib/R/lib -lR /usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lcurl: No such file or directory /usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lssl: No such file or directory /usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lcrypto: No such file or directory collect2: error: ld returned 1 exit status make[1]: *** [/usr/share/R/share/make/shlib.mk:10: alabaster.base.so] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' make[1]: Entering directory '/<<PKGBUILDDIR>>/src' make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' ERROR: compilation failed for package ‘alabaster.base’ * removing ‘/<<PKGBUILDDIR>>/debian/r-bioc-alabaster.base/usr/lib/R/site-library/alabaster.base’ dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-alabaster.base-1.12.1\+dfsg/debian/r-bioc-alabaster.base/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 12 Aug 2026 11:03:42 +0900'" returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]