[From nobody Mon Sep 28 03:29:08 2026 Received: (at submit) by bugs.debian.org; 1 May 2026 23:14:35 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-121.1 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FROMDEVELOPER,HAS_PACKAGE, PP_MIME_FAKE_ASCII_TEXT,SPF_HELO_PASS,SPF_NONE, USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 20; hammy, 150; neutral, 163; spammy, 0. spammytokens: hammytokens:0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--forky, 0.000-+--H*F:U*sanvila, 0.000-+--HTo:N*Debian Return-path: <sanvila@debian.org> Received: from mailly.debian.org ([2001:41b8:202:deb:6564:a62:52c3:4b72]:38390) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wIx47-000Ert-2h for submit@bugs.debian.org; Fri, 01 May 2026 23:14:35 +0000 Received: via submission from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by mailly.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wIx46-0004mi-1l for submit@bugs.debian.org; Fri, 01 May 2026 23:14:34 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Subject:To:From:Reply-To:Cc: MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=JFivntGIFeeJG+ZTl3TpHnDG6lKTMy/5YTtBNFonErw=; b=X+x8OBU6HBp8R4uCSbrPnHojF4 JV3CQONvCvRvBJMyQrKtv715GVcE13PNzKBKRRv89kiIiYGBcLrl2sNqXz1PGJ7sszLSE3h/27BCs SdxR2lnd3oI/pJy1pdBWntJTil0WEOvSBBhkzQbsnzUBUJ7hSgP5iAF7W43MmRuxwNmzI+t48RWyO RwRhnsgEbv8kCXpszV8mw6UKfDAvvWrQIeVKmahJRXIfINk199T5MkXfk+nf2KPtG+c3fM5G6cy0n qO9LRgvgt0+l0+vukzsnbB04BGVLs5klW0NNwENe9UTqwqY4XkrUs17tJfuPO7j2qPaAyAJwJdJuP dTeU0enQ==; Received: from sanvila by paradis.debian.org with local (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1wIx45-0005Vy-0n for submit@bugs.debian.org; Fri, 01 May 2026 23:14:33 +0000 From: Santiago Vila <sanvila@debian.org> To: Debian BTS <submit@bugs.debian.org> Subject: r-bioc-delayedarray: FTBFS: compress_atomic_vector.c:23:13: error: implicit declaration of function 'ATTRIB' [-Wimplicit-function-declaration] X-Debbugs-Cc: sanvila@debian.org Message-Id: <E1wIx45-0005Vy-0n@paradis.debian.org> Date: Fri, 01 May 2026 23:14:33 +0000 Delivered-To: submit@bugs.debian.org Package: src:r-bioc-delayedarray Version: 0.32.0+dfsg-3 Severity: serious Tags: ftbfs forky sid Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202605/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:r-bioc-delayedarray, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-delayedarray/ -O--buildsystem=R I: R Package: DelayedArray Version: 0.32.0 I: Building using R version 4.6.0-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 13 Mar 2026 13:31:31 +0900 mkdir -p /<<BUILDDIR>>/r-bioc-delayedarray-0.32.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-delayedarray-0.32.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 13 Mar 2026 13:31:31 +0900'" * installing *source* package ‘DelayedArray’ ... ** this is package ‘DelayedArray’ version ‘0.32.0’ file ‘inst/doc/B-Implementing_a_backend.html’ is missing ** using staged installation ** libs using C compiler: ‘x86_64-linux-gnu-gcc (Debian 15.2.0-17) 15.2.0’ make[1]: Entering directory '/<<PKGBUILDDIR>>/src' x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_DelayedArray.c -o R_init_DelayedArray.o x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c compress_atomic_vector.c -o compress_atomic_vector.o compress_atomic_vector.c: In function ‘simple_object_size’: compress_atomic_vector.c:23:13: error: implicit declaration of function ‘ATTRIB’ [-Wimplicit-function-declaration] 23 | if (ATTRIB(x) != R_NilValue) | ^~~~~~ compress_atomic_vector.c:23:23: warning: comparison between pointer and integer 23 | if (ATTRIB(x) != R_NilValue) | ^~ make[1]: *** [/usr/lib/R/etc/Makeconf:190: compress_atomic_vector.o] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' make[1]: Entering directory '/<<PKGBUILDDIR>>/src' make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' ERROR: compilation failed for package ‘DelayedArray’ * removing ‘/<<PKGBUILDDIR>>/debian/r-bioc-delayedarray/usr/lib/R/site-library/DelayedArray’ dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-delayedarray-0.32.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 13 Mar 2026 13:31:31 +0900'" returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]