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Have a nice day, Charles On Fri, 01 May 2026 23:14:37 +0000 Santiago Vila <sanvila@debian.org> wrote: > Package: src:r-bioc-hdf5array > Version: 1.34.0-3 > Severity: serious > Tags: ftbfs forky sid > > Dear maintainer: > > During a rebuild of all packages in unstable, this package failed to build. > > Below you will find the last part of the build log (probably the most > relevant part, but not necessarily). If required, the full build log > is available here: > > https://people.debian.org/~sanvila/build-logs/202605/ > > About the archive rebuild: The build was made on virtual machines from AWS, > using sbuild and a reduced chroot with only build-essential packages. > > If you cannot reproduce the bug please contact me privately, as I > am willing to provide ssh access to a virtual machine where the bug is > fully reproducible. > > If this is really a bug in one of the build-depends, please use > reassign and add an affects on src:r-bioc-hdf5array, so that this is still > visible in the BTS web page for this package. > > Thanks. > > -------------------------------------------------------------------------------- > [...] > debian/rules clean > dh clean --buildsystem R > dh_auto_clean -O--buildsystem=R > dh_autoreconf_clean -O--buildsystem=R > dh_clean -O--buildsystem=R > debian/rules binary > dh binary --buildsystem R > dh_update_autotools_config -O--buildsystem=R > dh_autoreconf -O--buildsystem=R > dh_auto_configure -O--buildsystem=R > dh_auto_build -O--buildsystem=R > dh_auto_test -O--buildsystem=R > create-stamp debian/debhelper-build-stamp > dh_testroot -O--buildsystem=R > dh_prep -O--buildsystem=R > dh_auto_install --destdir=debian/r-bioc-hdf5array/ -O--buildsystem=R > I: R Package: HDF5Array Version: 1.34.0 > I: Building using R version 4.6.0-2 > I: R API version: r-api-4.0 > I: Using built-time from d/changelog: Fri, 13 Mar 2026 16:36:46 +0900 > mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library > R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-hdf5array/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 13 Mar 2026 16:36:46 +0900'" > * installing *source* package ‘HDF5Array’ ... > ** this is package ‘HDF5Array’ version ‘1.34.0’ > file ‘src/Makevars’ has the wrong MD5 checksum > ** using staged installation > ** libs > using C compiler: ‘x86_64-linux-gnu-gcc (Debian 15.2.0-17) 15.2.0’ > make[1]: Entering directory '/<<PKGBUILDDIR>>/src' > x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o -- Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.plessy@oist.jp Okinawa Institute of Science and Technology Graduate University Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy]