[Reproducible-builds] Bug#835283: snap: FTBFS: exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]

Chris Lamb lamby at debian.org
Wed Aug 24 07:53:18 UTC 2016


Source: snap
Version: 2013-11-29-3
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

snap fails to build from source in unstable/amd64:

  [..]

  
  **************************************************************************************
  ** Starting build                                                                   **
  **************************************************************************************
  
   Package:              snap
   Version:              2013-11-29-3
   Build architecture:   amd64
   Date:                 Wed, 24 Aug 2016 08:45:19 +0100
   Hostname:             1dec81a9ff7c
   Uname:                Linux 1dec81a9ff7c 4.6.0-1-amd64 #1 SMP Debian 4.6.4-1 (2016-07-18) x86_64 GNU/Linux
   /etc/timezone:        Europe/London
  
  **************************************************************************************
  ** Installing build dependencies                                                    **
  **************************************************************************************
  
  dh_testdir
  dh_testroot
  dh_prep
  dh_testdir
  dh_testroot
  dh_install
  dh_installdocs
  dh_installchangelogs
  dh_compress
  dh_fixperms
  dh_installdeb
  dh_gencontrol
  dh_md5sums
  dh_builddeb
  dpkg-deb: building package 'snap-build-deps' in '../snap-build-deps_2013-11-29-3_all.deb'.
  
  The package has been created.
  Attention, the package has been created in the current directory,
  not in ".." as indicated by the message above!
  Selecting previously unselected package snap-build-deps.
  (Reading database ... 23244 files and directories currently installed.)
  Preparing to unpack snap-build-deps_2013-11-29-3_all.deb ...
  Unpacking snap-build-deps (2013-11-29-3) ...
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Correcting dependencies... Done
  The following additional packages will be installed:
    help2man
  The following NEW packages will be installed:
    help2man
  0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
  1 not fully installed or removed.
  Need to get 162 kB of archives.
  After this operation, 465 kB of additional disk space will be used.
  Get:1 http://httpredir.debian.org/debian sid/main amd64 help2man amd64 1.47.4 [162 kB]
  Fetched 162 kB in 0s (12.9 MB/s)
  Selecting previously unselected package help2man.
  (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 23248 files and directories currently installed.)
  Preparing to unpack .../help2man_1.47.4_amd64.deb ...
  Unpacking help2man (1.47.4) ...
  Setting up help2man (1.47.4) ...
  Processing triggers for man-db (2.7.5-1) ...
  Setting up snap-build-deps (2013-11-29-3) ...
  
  **************************************************************************************
  ** Environment                                                                      **
  **************************************************************************************
  
  PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
  HOSTNAME=1dec81a9ff7c
  TERM=xterm
  PAGER=more
  DISPLAY=:0
  DOCKER_IMAGE=lamby-debian-sid
  DEB_BUILD_OPTIONS=parallel=9
  PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
  HOME=/home/lamby
  LOGNAME=lamby
  SHLVL=1
  PWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29
  OLDPWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap
  GPG_TTY=/dev/console
  QUILT_PATCHES=debian/patches
  QUILT_NO_DIFF_INDEX=1
  QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
  DEBEMAIL=lamby at debian.org
  DEBFULLNAME=Chris Lamb
  EDITOR=vim
  LESS=-cgiFx4M
  GPG_KEY=1E953E27D4311E58
  BLASTER=A220 I5 D1 H5 P330 T6
  _=/usr/bin/env
  
  **************************************************************************************
  ** Building snap 2013-11-29-3 on amd64                                              **
  **************************************************************************************
  
   dpkg-buildpackage -rfakeroot -D -us -uc -b
  dpkg-buildpackage: info: source package snap
  dpkg-buildpackage: info: source version 2013-11-29-3
  dpkg-buildpackage: info: source distribution unstable
  dpkg-buildpackage: info: source changed by Sascha Steinbiss <satta at debian.org>
   dpkg-source --before-build snap-2013-11-29
  dpkg-buildpackage: info: host architecture amd64
   fakeroot debian/rules clean
  dh clean 
     dh_testdir
     debian/rules override_dh_auto_clean
  make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  touch depend Zoe/depend
  dh_auto_clean
  	make -j1 clean
  make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  rm -f *.o snap fathom forge hmm-info exonpairs
  cd Zoe; make clean
  make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  rm -f *.o zoe-loop lexica seqedit seqstats twinkle
  make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  if [ -f depend.orig ] ;     then mv depend.orig     depend;     fi
  if [ -f Zoe/depend.orig ] ; then mv Zoe/depend.orig Zoe/depend; fi
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
     dh_clean
   debian/rules build
  dh build 
     dh_testdir
     dh_update_autotools_config
     dh_auto_configure
     debian/rules override_dh_auto_build
  make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  dh_auto_build CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-fPIE -pie -Wl,-z,relro -Wl,-z,now"
  	make -j1
  make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  make gcc
  make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  cd Zoe; make CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security";
  make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  make gcc CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[5]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  make zoe-loop CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[6]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoe-loop.o zoe-loop.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeAlignment.o zoeAlignment.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCDS.o zoeCDS.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCounter.o zoeCounter.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDNA.o zoeDNA.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDistribution.o zoeDistribution.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDuration.o zoeDuration.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFastaFile.o zoeFastaFile.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeature.o zoeFeature.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureFactory.o zoeFeatureFactory.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureTable.o zoeFeatureTable.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeHMM.o zoeHMM.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeIsochore.o zoeIsochore.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeMath.o zoeMath.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeModel.o zoeModel.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoePhasePref.o zoePhasePref.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeProtein.o zoeProtein.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeScanner.o zoeScanner.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeState.o zoeState.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTools.o zoeTools.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTransition.o zoeTransition.c
  cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTrellis.o zoeTrellis.c
  cc -o zoe-loop -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o  -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
  make[6]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  make[5]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
  make snap  CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o snap.o snap.c
  gcc -o snap -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 snap.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o  -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
  make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  make fathom CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o fathom.o fathom.c
  gcc -o fathom -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fathom.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o  -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
  make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  make forge CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o forge.o forge.c
  gcc -o forge -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 forge.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o  -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
  make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  make hmm-info CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o hmm-info.o hmm-info.c
  gcc -o hmm-info -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 hmm-info.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o  -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
  make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  make exonpairs CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
  make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o exonpairs.o exonpairs.c
  exonpairs.c: In function 'get_exons':
  exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
         if (exon->score < MIN_EINIT_SCORE)  skip = 1; break;
         ^~
  exonpairs.c:86:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if (exon->score < MIN_EINIT_SCORE)  skip = 1; break;
                                                       ^~~~~
  exonpairs.c:87:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
         if (length      < MIN_EINIT_LENGTH) skip = 1; break;
         ^~
  exonpairs.c:87:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if (length      < MIN_EINIT_LENGTH) skip = 1; break;
                                                       ^~~~~
  exonpairs.c:89:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
         if (exon->score < MIN_ETERM_SCORE)  skip = 1; break;
         ^~
  exonpairs.c:89:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if (exon->score < MIN_ETERM_SCORE)  skip = 1; break;
                                                       ^~~~~
  exonpairs.c:90:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
         if (length      < MIN_ETERM_LENGTH) skip = 1; break;
         ^~
  exonpairs.c:90:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if (length      < MIN_ETERM_LENGTH) skip = 1; break;
                                                       ^~~~~
  exonpairs.c:92:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
         if (exon->score < MIN_EXON_SCORE)   skip = 1; break;
         ^~
  exonpairs.c:92:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if (exon->score < MIN_EXON_SCORE)   skip = 1; break;
                                                       ^~~~~
  exonpairs.c:93:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
         if (length      < MIN_EXON_LENGTH)  skip = 1; break;
         ^~
  exonpairs.c:93:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if (length      < MIN_EXON_LENGTH)  skip = 1; break;
                                                       ^~~~~
  cc1: all warnings being treated as errors
  Makefile:111: recipe for target 'exonpairs.o' failed
  make[4]: *** [exonpairs.o] Error 1
  make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  Makefile:98: recipe for target 'gcc' failed
  make[3]: *** [gcc] Error 2
  make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  Makefile:60: recipe for target 'default' failed
  make[2]: *** [default] Error 2
  make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  dh_auto_build: make -j1 returned exit code 2
  debian/rules:30: recipe for target 'override_dh_auto_build' failed
  make[1]: *** [override_dh_auto_build] Error 2
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
  debian/rules:16: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
-------------- next part --------------
A non-text attachment was scrubbed...
Name: snap.2013-11-29-3.unstable.amd64.log.txt.gz
Type: application/octet-stream
Size: 3066 bytes
Desc: not available
URL: <http://lists.alioth.debian.org/pipermail/reproducible-builds/attachments/20160824/94472e3a/attachment.obj>


More information about the Reproducible-builds mailing list