[Blends-commit] r1781 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: moeller
Date: Tue Aug 18 13:56:22 2009
New Revision: 1781
URL: http://svn.debian.org/viewsvn/blends?rev=1781&view=rev

Log:
s/Friends/Enhanced-By/, removal of pdb2pqr to debian-science


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1781&view=diff&r1=1781&r2=1780&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Aug 18 13:56:22 2009
@@ -51,13 +51,13 @@
 Recommends: phyml
 
 Recommends: autodock
-Friends: autogrid
+Enhanced-By: autogrid
 Registration: http://autodock.scripps.edu/downloads/autodock-registration
 Why:         Molecular modelling and molecular dynamics.
 
 
 Recommends: autodocktools
-Friends: mgltools-dejavu, mgltools-pmv, mgltools-utpackages, mgltools-vision, mgltools-volume, mgltools-bhtree, mgltools-geomutils, mgltools-opengltk, mgltools-pyglf, mgltools-sff
+Enhanced-By: mgltools-dejavu, mgltools-pmv, mgltools-utpackages, mgltools-vision, mgltools-volume, mgltools-bhtree, mgltools-geomutils, mgltools-opengltk, mgltools-pyglf, mgltools-sff, pdb2pqr
 Comment: The package autodocktools depends from the mgltools-* packages mentioned
          above, so they will be installed even if they would not be mentioned in
          the list of Depends in the metapackage med-bio.  But leaving them out here
@@ -71,25 +71,6 @@
 
 Recommends: staden-io-lib-utils
 
-Recommends: pdb2pqr
-Homepage: http://pdb2pqr.sourceforge.net/
-Responsible: Manuel Prinz <debian at pinguinkiste.de>
-License: GPL
-WNPP: 416269
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/pdb2pqr/trunk/
-Pkg-Description: Converts Protein Data Bank (PDB) files to PQR
- From the PDB2PQR hompage: "PDB2PQR is a Python software package that
- automates many of the common tasks of preparing structures for
- continuum electrostatics calculations. This includes adding a limited
- number of missing heavy atoms to biomolecular structures, optimizing
- the protein for favorable hydrogen bonding, determining side-chain
- pKas, and assigning charge and radius parameters from a variety of
- force fields, ultimately yielding a final PQR file."
- .
- PDB2PQR is a tool often used in conjunction with APBS, which is in
- Debian already. I have had good contact with both upstream authors in
- the past.
-
 Recommends: r-other-genabel
 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
 Responsible: Steffen Moeller <steffen_moeller at gmx.de>