[Blends-commit] r1815 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: tille
Date: Fri Aug 21 13:37:51 2009
New Revision: 1815
URL: http://svn.debian.org/viewsvn/blends?rev=1815&view=rev

Log:
Start experimenting with mentioning publications in tasks file


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1815&view=diff&r1=1815&r2=1814&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Aug 21 13:37:51 2009
@@ -12,8 +12,22 @@
 Recommends:     fastlink, loki, plink, r-cran-qtl
 Why:         Genetics
 
-Recommends:     amap-align, blast2, boxshade, dialign, dialign-tx, gff2aplot, hmmer, kalign, mafft, mummer, muscle, poa, probcons, proda, seaview, sim4, sibsim4, sigma-align, t-coffee, wise, exonerate
-Why:         Sequence alignments and related programs.
+X-Begin-Category: Sequence alignments and related programs.
+
+Recommends:     amap-align, blast2, boxshade, gff2aplot, hmmer, kalign, mafft, mummer, muscle, poa, probcons, proda, seaview, sim4, sibsim4, sigma-align, t-coffee, wise, exonerate
+
+Recommends: dialign
+Published-Autors: Burkhard Morgenstern
+Published-In: Bioinformatics 15(3):211-218
+Published-Year: 1999
+
+Recommends: dialign-tx
+Published-Autors: Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern
+Published-Title: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies
+Published-In: Algorithms for Molecular Biology 3:6
+Published-Year: 2008
+
+X-End-Category: Sequence alignments and related programs.
 
 Recommends:     last-align, maq, ssake, velvet
 Why:         Tools related to high-throughput sequencing.
@@ -35,8 +49,17 @@
 Recommends:     plasmidomics
 Why:         Presentation
 
-Recommends:     biosquid, gff2ps, mipe, melting, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, perlprimer, primer3, readseq, tigr-glimmer
-Why:         Tools for the molecular biologist.
+X-Begin-Category: Tools for the molecular biologist.
+
+Recommends:     biosquid, gff2ps, mipe, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, perlprimer, primer3, readseq, tigr-glimmer
+
+Recommends: melting
+Published-Autors: Nicolas Le Novère
+Published-Title: MELTING, computing the melting temperature of nucleic acid duplex
+Published-In: Bioinformatics, 17: S.1226-1227
+Published-Year: 2001
+
+X-End-Category: Tools for the molecular biologist.
 
 Suggests:    mozilla-biofox
 Why:         Tools for the molecular biologist. Because of the dependency from firefox we only suggest this package to not bloat the system of the user.