[Blends-commit] r1830 - projects/med/trunk/debian-med/tasks
Debian Pure Blends Subversion Commit
noreply at alioth.debian.org
Sat Aug 22 19:25:46 UTC 2009
Author: tille
Date: Sat Aug 22 19:25:45 2009
New Revision: 1830
URL: http://svn.debian.org/viewsvn/blends?rev=1830&view=rev
Log:
Revert s/Depends/Recommends/, Reason: Current blends-dev does not handle Recommends properly. Go with this situation for the moment until blends-dev gets rewritten
Modified:
projects/med/trunk/debian-med/tasks/bio
projects/med/trunk/debian-med/tasks/bio-dev
projects/med/trunk/debian-med/tasks/imaging
projects/med/trunk/debian-med/tasks/practice
projects/med/trunk/debian-med/tasks/psychology
projects/med/trunk/debian-med/tasks/tools
Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1830&view=diff&r1=1830&r2=1829&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Aug 22 19:25:45 2009
@@ -5,9 +5,9 @@
X-Begin-Category: Phylogenetic analysis
-Recommends: altree, fastdnaml, njplot, tree-puzzle | tree-ppuzzle
+Depends: altree, fastdnaml, njplot, tree-puzzle | tree-ppuzzle
-Recommends: treeviewx
+Depends: treeviewx
X-Published-Authors: FIXME
X-Published-Title: FIXME
Published-In: Computer Applications in the Bioscience 12:357-358
@@ -15,64 +15,64 @@
X-End-Category: Phylogenetic analysis
-Recommends: molphy, phylip, treetool
+Depends: molphy, phylip, treetool
Why: Phylogenetic analysis (Non-free, thus only suggested).
-Recommends: fastlink, loki, plink, r-cran-qtl
+Depends: fastlink, loki, plink, r-cran-qtl
Why: Genetics
X-Begin-Category: Sequence alignments and related programs.
-Recommends: amap-align, blast2, boxshade, gff2aplot, hmmer, kalign, mafft, mummer, muscle, sim4, sibsim4, t-coffee, wise, exonerate
+Depends: amap-align, blast2, boxshade, gff2aplot, hmmer, kalign, mafft, mummer, muscle, sim4, sibsim4, t-coffee, wise, exonerate
-Recommends: dialign
+Depends: dialign
Published-Authors: Burkhard Morgenstern
Published-In: Bioinformatics 15(3):211-218
Published-Year: 1999
-Recommends: dialign-tx
+Depends: dialign-tx
Published-Authors: Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern
Published-Title: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies
Published-In: Algorithms for Molecular Biology 3:6
Published-Year: 2008
-Recommends: poa
+Depends: poa
Published-Authors: Christopher Lee
X-Comment: I hope the Copyright owner is the Author of the publication. Please FIX it if I'm wrong!!!
Published-In: Bioinformatics 10;20(10):1546-1556.
Published-Year: 2004
-Recommends: probcons
+Depends: probcons
Published-Authors: C. B. Do, M. S. P. Mahabhashyam, M. Brudno, S. Batzoglou
Published-In: Genome Research 15: 330-340
Published-Year: 2005
-Recommends: proda
+Depends: proda
Published-Authors: T. M. Phuong, C. B. Do, R. C. Edgar, S. Batzoglou
Published-Title: Multiple alignment of protein sequences with repeats and rearrangements
Published-In: Nucleic Acids Research 34(20), 5932-5942
Published-Year: 2006
-Recommends: seaview
+Depends: seaview
Published-Authors: N. Galtier, M. Gouy, C. Gautier
Published-Title: SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny
Published-In: Comput. Applic. Biosci. 12:543-548
Published-Year: 1996
-Recommends: sigma-align
+Depends: sigma-align
X-Published-Authors: FIXME
X-Published-Title: FIXME
Published-In: BMC Bioinformatics 16;7:143
Published-Year: 2006
-Recommends: emboss, embassy-domalign, embassy-domainatrix
+Depends: emboss, embassy-domalign, embassy-domainatrix
Suggests: emboss-explorer
Why: The EMBOSS sequence analysis suite and its galaxy.
-Recommends: arb, clustalx
+Depends: arb, clustalx
Why: Sequence alignments and related programs (Non-free, thus only suggested).
-Recommends: clustalw | clustalw-mpi
+Depends: clustalw | clustalw-mpi
X-Published-Authors: M. Larkin, et al.
X-Published-Title: Clustal W and Clustal X version 2.0
Published-In: Bioinformatics 23(21):2947-2948
@@ -80,18 +80,18 @@
X-End-Category: Sequence alignments and related programs.
-Recommends: last-align, maq, ssake, velvet
+Depends: last-align, maq, ssake, velvet
Why: Tools related to high-throughput sequencing.
X-Begin-Category: Analysis of RNA sequences.
-Recommends: infernal
+Depends: infernal
Published-Authors: E. P. Nawrocki, S. R. Eddy
Published-Title: Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
Published-In: PLoS Comput. Biol. 3:e56
Published-Year: 2007
-Recommends: rnahybrid
+Depends: rnahybrid
Published-Authors: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich
Published-Title: Fast and effective prediction of microRNA/target duplexes RNA
Published-In: 10:1507-1517
@@ -99,30 +99,30 @@
X-End-Category: Analysis of RNA sequences.
-Recommends: adun.app, garlic, gamgi, gdpc, ghemical, gromacs, pymol, rasmol, r-other-bio3d, massxpert
+Depends: adun.app, garlic, gamgi, gdpc, ghemical, gromacs, pymol, rasmol, r-other-bio3d, massxpert
Why: Molecular modelling and molecular dynamics.
Comment: r-other-bio3d depends from r-cran-rocr which is also maintained by Debian Med team
-Recommends: plasmidomics
+Depends: plasmidomics
Why: Presentation
X-Begin-Category: Tools for the molecular biologist.
-Recommends: biosquid, gff2ps, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, perlprimer, readseq, tigr-glimmer
+Depends: biosquid, gff2ps, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, perlprimer, readseq, tigr-glimmer
-Recommends: melting
+Depends: melting
Published-Authors: Nicolas Le Novère
Published-Title: MELTING, computing the melting temperature of nucleic acid duplex
Published-In: Bioinformatics, 17: S.1226-1227
Published-Year: 2001
-Recommends: mipe
+Depends: mipe
Published-Authors: Aerts J & Veenendaal T.
Published-Title: MIPE - a XML-format to facilitate the storage and exchange of PCR-related data
Published-In: Online Journal of Bioinformatics 6(2): 114-120
Published-Year: 2005
-Recommends: primer3
+Depends: primer3
Published-Authors: S. Rozen, H. Skaletsky
Published-Title: Primer3 on the WWW for general users and for biologist programmers
Published-In: Methods Mol Biol. 132:365-86
@@ -133,22 +133,22 @@
Suggests: mozilla-biofox
Why: Tools for the molecular biologist. Because of the dependency from firefox we only suggest this package to not bloat the system of the user.
-Recommends: glam2
+Depends: glam2
Why: Motif search
-Recommends: sequenceconverter.app
+Depends: sequenceconverter.app
-Recommends: raster3d
+Depends: raster3d
-Recommends: phyml
+Depends: phyml
-Recommends: autodock
+Depends: autodock
Enhanced-By: autogrid
Registration: http://autodock.scripps.edu/downloads/autodock-registration
Why: Molecular modelling and molecular dynamics.
-Recommends: autodocktools
+Depends: autodocktools
Enhanced-By: mgltools-dejavu, mgltools-pmv, mgltools-utpackages, mgltools-vision, mgltools-volume, mgltools-bhtree, mgltools-geomutils, mgltools-opengltk, mgltools-pyglf, mgltools-sff, pdb2pqr
Comment: The package autodocktools depends from the mgltools-* packages mentioned
above, so they will be installed even if they would not be mentioned in
@@ -157,17 +157,17 @@
http://qa.debian.org/developer.php?login=debian-med-packaging@lists.alioth.debian.org&ordering=3
so they are mentioned here in addition to autodocktools.
-Recommends: mustang
+Depends: mustang
Published-Authors: A. S. Konagurthu, J. C. Whisstock, P. J. Stuckey, A. M. Lesk
Published-Title: MUSTANG: A multiple structural alignment algorithm
Published-In: Proteins: Structure, Function, and Bioinformatics. 64(3):559-574
Published-Year: 2006
-Recommends: theseus
+Depends: theseus
-Recommends: staden-io-lib-utils
+Depends: staden-io-lib-utils
-Recommends: r-other-genabel
+Depends: r-other-genabel
Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
Responsible: Steffen Moeller <steffen_moeller at gmx.de>
License: GPL 2+
@@ -177,7 +177,7 @@
A package for genome-wide association analysis between quantitative
or binary traits and single-nucleiotide polymorphisms (SNPs).
-Recommends: meme
+Depends: meme
Homepage: http://meme.nbcr.net/meme/
Responsible: Steffen Moeller <moeller at debian.org>
License: non-free for commercial purpose (http://meme.nbcr.net/meme/COPYRIGHT.html)
@@ -196,7 +196,7 @@
techniques to automatically choose the best width, number of occurrences,
and description for each motif.
-Recommends: vienna-rna
+Depends: vienna-rna
Homepage: http://www.tbi.univie.ac.at/~ivo/RNA/
Responsible: Steffen Moeller <moeller at debian.org>
License: non-free but redistributable
@@ -206,7 +206,7 @@
stand-alone programs for the prediction and comparison of RNA secondary
structures.
-Recommends: cytoscape
+Depends: cytoscape
Homepage: http://cytoscape.org/
Responsible: Mike Smoot <mes at aescon.com>
License: LGPL
@@ -216,9 +216,9 @@
interaction networks and integrating these interactions with gene expression
profiles and other state data. Additional features are available as plugins.
-Recommends: ballview
+Depends: ballview
-Recommends: raxml
+Depends: raxml
Homepage: http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm
License: GPL
Pkg-Description: Randomized Axelerated Maximum Likelihood
@@ -230,7 +230,7 @@
http://phylobench.vital-it.ch/raxml-bb/ and
http://8ball.sdsc.edu:8889/cipres-web/Bootstrap.do .
-Recommends: axparafit
+Depends: axparafit
Homepage: http://icwww.epfl.ch/~stamatak/AxParafit.html
Responsible: David Paleino <d.paleino at gmail.com>
License: GPL
@@ -242,7 +242,7 @@
for compute clusters and was used to carry out the largest
co-evolutionary analysis to date for the paper describing the software.
-Recommends: axpcoords
+Depends: axpcoords
Homepage: http://icwww.epfl.ch/~stamatak/AxParafit.html
Responsible: David Paleino <d.paleino at gmail.com>
License: GPL
@@ -255,7 +255,7 @@
This program is required for the pipeline that conducts a full host-parasite
co-phylogenetic analysis in combination with AxParafit.
-Recommends: copycat
+Depends: copycat
Homepage: http://www-ab.informatik.uni-tuebingen.de/software/copycat/welcome.html
License: Use of the program is free for academic purposes at an academic institute. For all other uses, please contact the authors.
Pkg-Description: fast access to cophylogenetic analyses
@@ -266,7 +266,7 @@
creation of customized host-parasite association data and the
computation of phylogenetic host/parasite trees based on the NCBI taxonomy.
-Recommends: btk-core
+Depends: btk-core
Homepage: http://sourceforge.net/projects/btk/
Responsible: Morten Kjeldgaard <mok at bioxray.au.dk>
License: GPL
@@ -277,7 +277,7 @@
for common tasks in structural biology to facilitate the development of
molecular modeling, design and analysis tools.
-Recommends: tacg
+Depends: tacg
Homepage: http://sourceforge.net/projects/tacg
Responsible: Charles Plessy <plessy at debian.org>
License: GPL and others
@@ -303,7 +303,7 @@
The use of tacg may be cited as: Mangalam, HJ. (2002) tacg, a grep for DNA.
BMC Bioinformatics. 3:8 http://www.biomedcentral.com/1471-2105/3/8
-Recommends: treeplot
+Depends: treeplot
Responsible: Charles Plessy <plessy at debian.org>
License: GPL
WNPP: 461508
@@ -322,7 +322,7 @@
package.' So this package should probably be delisted in favour of
populations (see http://lists.debian.org/debian-med/2008/03/msg00124.html).
-Recommends: treevolve
+Depends: treevolve
Homepage: http://evolve.zoo.ox.ac.uk/software.html?id=Treevolve
Responsible: Charles Plessy <plessy at debian.org>
License: has to be verified
@@ -344,7 +344,7 @@
Citation: Population dynamics of HIV-1 inferred from gene sequences
Grassly NC, Harvey PH & Holmes EC (1999) Genetics 151, 427-438.
-Recommends: asap
+Depends: asap
Homepage: http://asap.ahabs.wisc.edu/software/asap/
Responsible: Andreas Tille <tille at debian.org>
License: GPL
@@ -371,7 +371,7 @@
installations come to pass, ASAP will be further extended to be
inter-operable between sites.
-Recommends: emboss-kaptain
+Depends: emboss-kaptain
Homepage: http://userpage.fu-berlin.de/~sgmd/download.html
Responsible: Charles Plessy <plessy at debian.org>
License: GPL-2+
@@ -384,7 +384,7 @@
analysis. With EMBOSS.kaptn it integrates nicely into X window based
desktops like KDE.
-Recommends: agdbnet
+Depends: agdbnet
Homepage: http://pubmlst.org/software/database/agdbnet/
Responsible: Andreas Tille <tille at debian.org>
License: GPL
@@ -407,7 +407,7 @@
* Campylobacter flaA
* Streptococcus equi seM
-Recommends: martj
+Depends: martj
Homepage: http://www.ebi.ac.uk/biomart/
Responsible: Steffen Moeller <moeller at debian.org>
License: GPL
@@ -418,7 +418,7 @@
to the following data sources: UniProt Proteomes, Macromolecular
Structure Database (MSD), Ensembl, Vega, and dbSNP.
-Recommends: cluster3
+Depends: cluster3
Homepage: http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv
License: non-free
WNPP: 286167
@@ -434,7 +434,7 @@
distance and the city-block distance were added to the available
measures of similarity.
-Recommends: jmol
+Depends: jmol
Homepage: http://jmol.sourceforge.net/
Responsible: Vincent Fourmond <fourmond at debian.org>
License: LGPL
@@ -457,7 +457,7 @@
http://lists.debian.org/debian-med/2008/03/msg00097.html before
you might download the source packages http://debian.wgdd.de/temp/jmol/
-Recommends: jtreeview
+Depends: jtreeview
Homepage: http://jtreeview.sourceforge.net/
Responsible: Steffen Moeller <moeller at debian.org>
License: GPL
@@ -475,7 +475,7 @@
Java TreeView is an extensible viewer for microarray data in
PCL or CDT format.
-Recommends: smile
+Depends: smile
Homepage: http://www-igm.univ-mlv.fr/~marsan/smile_english.html
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 221492
@@ -490,7 +490,7 @@
The specificity of SMILE is to allow to deal with what we call structured
motifs, which are motifs associated by some distance constraints.
-Recommends: cactus
+Depends: cactus
Homepage: http://www.cactuscode.org/Community/Biology.html
License: GPL
Pkg-Description:
@@ -504,7 +504,7 @@
Metacomputing Toolkit, HDF5 parallel file I/O, the PETSc scientific library,
adaptive mesh refinement, web interfaces, and advanced visualization tools.
-Recommends: contralign
+Depends: contralign
Homepage: http://contra.stanford.edu/contralign/
License: Public Domain
Pkg-Description: parameter learning framework for protein pairwise sequence alignment
@@ -515,7 +515,7 @@
previously unseen sequences and avoid overfitting by controlling model
complexity through regularization.
-Recommends: galaxy
+Depends: galaxy
Homepage: http://g2.trac.bx.psu.edu/
License: MIT
WNPP: 432472
@@ -526,7 +526,7 @@
strong ties with the UCSC genome browser, and makes it easy to
visualise modified annotation files as a custom track.
-Recommends: genographer
+Depends: genographer
Homepage: http://hordeum.oscs.montana.edu/genographer/
License: GPL
Pkg-Description: read data and reconstruct them into a gel image
@@ -538,7 +538,7 @@
The program is written in Java and uses the Java 1.3 API. Therefore,
it should run on any machine that can run java.
-Recommends: molekel
+Depends: molekel
Homepage: http://bioinformatics.org/molekel/wiki/Main/HomePage
License: GPL
Pkg-Description: multiplatform molecular visualization
@@ -546,7 +546,7 @@
program being developed at the Swiss National Supercomputing Centre
(CSCS).
-Recommends: pftools
+Depends: pftools
Homepage: ftp://us.expasy.org/databases/prosite/tools/ps_scan/sources
License: GPL
Pkg-Description: tools to handle patterns from PROSITE
@@ -555,7 +555,7 @@
in Swiss-Prot or FASTA format. It requires two compiled external
programs from the PFTOOLS, which are also distributed with the sources.
-Recommends: proalign
+Depends: proalign
Homepage: http://evol-linux1.ulb.ac.be/ueg/ProAlign/
License: GPL
Responsible: Charles Plessy <plessy at debian.org>
@@ -575,7 +575,7 @@
characters according to an evolutionary model. It has been published in
Bioinformatics. 2003 Aug 12;19(12):1505-13.
-Recommends: ssaha
+Depends: ssaha
Homepage: http://www.sanger.ac.uk/Software/analysis/SSAHA/
License: GPL
Responsible: Charles Plessy <plessy at debian.org>
@@ -595,7 +595,7 @@
http://www.sanger.ac.uk/Software/analysis/SSAHA2/
does not seem to be available.
-Recommends: ngila
+Depends: ngila
Homepage: http://scit.us/projects/ngila/
License: GPLv3
Responsible: Charles Plessy <plessy at debian.org>
@@ -620,7 +620,7 @@
Ngila is published in Cartwright RA Bioinformatics 2007
23(11):1427-1428; doi:10.1093/bioinformatics/btm095
-Recommends: tm-align
+Depends: tm-align
Homepage: http://zhang.bioinformatics.ku.edu/TM-align/
License: free to change and redistribute
Responsible: Steffen Moeller <moeller at debian.org>
@@ -634,7 +634,7 @@
TM-align performs a structural alignment of protein sequences. It is
said to be 10 times faster than DALI and no worse in accuracy.
-Recommends: dazzle
+Depends: dazzle
Homepage: http://www.biojava.org/dazzle
Responsible: Steffen Moeller <moeller at debian.org>
License: LGPL
@@ -649,7 +649,7 @@
.
Information on DAS is available from http://www.biodas.org/
-Recommends: ecell
+Depends: ecell
Homepage: http://www.e-cell.org/
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 241195
@@ -674,7 +674,7 @@
* E-Cell Modeling Environment (or E-Cell ME)
* E-Cell Analysis Toolkit.
-Recommends: ncoils
+Depends: ncoils
Homepage: http://www.russell.embl.de/cgi-bin/coils-svr.pl
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 299856
@@ -686,7 +686,7 @@
Lupas, van Dyke & Stock, Predicting coiled coils from
protein sequences Science, 252, 1162-1164, 1991.
-Recommends: haploview
+Depends: haploview
Homepage: http://www.broad.mit.edu/mpg/haploview/
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 311421
@@ -698,7 +698,7 @@
to determine genes and genetic pathways that are associated
with diseases. This is an early stage in the quest for new drugs.
-Recommends: bio-mauve
+Depends: bio-mauve
Homepage: http://asap.ahabs.wisc.edu/mauve/
Responsible: Andreas Tille <tille at debian.org>
License: GPL
@@ -730,7 +730,7 @@
Note: There are instructions for compiling Mauve from source available at
http://asap.ahabs.wisc.edu/mauve/mauve-developer-guide/compiling-mauvealigner-from-source.html
-Recommends: mauvealigner
+Depends: mauvealigner
Homepage: http://asap.ahabs.wisc.edu/mauve/
Responsible: Andreas Tille <tille at debian.org>
License: GPL
@@ -763,7 +763,7 @@
.
Mauve is developed at the University of Wisconsin.
-Recommends: gbrowse
+Depends: gbrowse
Homepage: http://www.gmod.org/wiki/index.php/GBrowse
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 429610
@@ -789,7 +789,7 @@
* Customizable plug-in architecture (e.g. run BLAST, dump & import many formats,
find oligonucleotides, design primers, create restriction maps, edit features)
-Recommends: mira
+Depends: mira
Homepage: http://chevreux.org/projects_mira.html
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 435915
@@ -808,7 +808,7 @@
between organisms, and pristine assembly of sequences from various
sources for oligo design in clinical microarray experiments.
-Recommends: phylographer
+Depends: phylographer
Homepage: http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 426489
@@ -827,7 +827,7 @@
biological sequence alignment reports (BLAST is provided by Debian's
blast2 package).
-Recommends: phylowin
+Depends: phylowin
Homepage: http://pbil.univ-lyon1.fr/software/phylowin.html
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 395840
@@ -846,7 +846,7 @@
its use for profit. Therfore, Phylo_win will unfortunately have to be
distributed in contrib or non-free.
-Recommends: seq-gen
+Depends: seq-gen
Homepage: http://tree.bio.ed.ac.uk/software/seqgen/
License: Free
Pkg-Description: simulate the evolution of nucleotide or amino acid sequences
@@ -862,7 +862,7 @@
incorporates most of the commonly used (and computationally tractable)
models of molecular sequence evolution.
-Recommends: wgs-assembler
+Depends: wgs-assembler
Homepage: http://wgs-assembler.sourceforge.net/
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 395843
@@ -906,7 +906,7 @@
See also: http://www.jcvi.org/cms/research/software/celera-assembler/overview/
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: gbioseq
+Depends: gbioseq
Homepage: http://www.bioinformatics.org/project/?group_id=94
License: GPL
Pkg-Description: DNA sequence editor for Linux
@@ -914,7 +914,7 @@
The goal is to provide an easy to use software to edit DNA sequences under
Linux, Windows, MacOsX, using GTK C# (Mono).
-Recommends: populations
+Depends: populations
Homepage: http://bioinformatics.org/~tryphon/populations/
License: GPL
Pkg-Description: individuals or populations distances based on allelic frequencies
@@ -931,14 +931,14 @@
* Converts data files from Genepop to different formats (Genepop, Genetix, Msat,
Populations...)
-Recommends: phpphylotree
+Depends: phpphylotree
Homepage: http://www.bioinformatics.org/project/?group_id=372
License: GPL
Pkg-Description: draw phylogenetic trees
PhpPhylotree is a web application that is able to draw phylogenetic trees.
It produces an SVG (Scalable Vector Graphic) file from phylip/newick tree files.
-Recommends: tracetuner
+Depends: tracetuner
Homepage: http://www.jcvi.org/cms/research/software/tracetuner/overview
License: GPL; but US Patent #6,681,186
Pkg-Description: DNA sequencing and trace processing
@@ -967,7 +967,7 @@
and conditions of the GNU General Public License, version 2, as published by the
Free Software Foundation (the "GNU General Public License").
-Recommends: twain
+Depends: twain
Homepage: http://cbcb.umd.edu/software/pirate/twain/twain.shtml
License: Open Source
Pkg-Description: syntenic genefinder employing a Generalized Pair Hidden Markov Model
@@ -990,7 +990,7 @@
Slides from a talk at Computational Genomics 2004 are now available.
Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
-Recommends: rose
+Depends: rose
Homepage: http://www.cbcb.umd.edu/software/rose/Rose.html
License: Open Source
Pkg-Description: Region-Of-Synteny Extractor
@@ -1009,7 +1009,7 @@
boundaries of the output region.
Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
-Recommends: glimmerhmm
+Depends: glimmerhmm
Homepage: http://www.cbcb.umd.edu/software/glimmerhmm/
License: Artistic
Pkg-Description: Eukaryotic Gene-Finding System
@@ -1024,7 +1024,7 @@
user manual can be consulted here.
Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
-Recommends: genezilla
+Depends: genezilla
Homepage: http://www.genezilla.org/
License: Artistic
Pkg-Description: eukaryotic gene finder
@@ -1051,7 +1051,7 @@
for the comparative gene finder TWAIN.
Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
-Recommends: exalt
+Depends: exalt
Homepage: http://www.cbcb.umd.edu/software/exalt/
License: Artistic
Pkg-Description: phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
@@ -1065,7 +1065,7 @@
run on other species.
Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
-Recommends: jigsaw
+Depends: jigsaw
Homepage: http://www.cbcb.umd.edu/software/jigsaw/
License: Artistic
Pkg-Description: gene prediction using multiple sources of evidence
@@ -1093,7 +1093,7 @@
custom tracks in the UCSC Human Genome Browser
Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
-Recommends: genesplicer
+Depends: genesplicer
Homepage: http://www.cbcb.umd.edu/software/GeneSplicer/
License: Artistic
Pkg-Description: computational method for splice site prediction
@@ -1160,7 +1160,7 @@
packaging effort is stalled. Feel free to tell us, if you are
interested in turning this into an official package.
-Recommends: mummergpu
+Depends: mummergpu
Homepage: http://mummergpu.sourceforge.net/
License: Artistic
Pkg-Description: High-throughput sequence alignment using Graphics Processing Units
@@ -1188,7 +1188,7 @@
technologies.
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: amos-assembler
+Depends: amos-assembler
Homepage: http://amos.sourceforge.net/
License: Artistic
Pkg-Description: modular whole genome assembler
@@ -1205,7 +1205,7 @@
design philosophy and a software system.
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: amoscmp
+Depends: amoscmp
Homepage: http://amos.sourceforge.net/docs/pipeline/AMOScmp.html
License: Artistic
Pkg-Description: comparative genome assembly package
@@ -1234,7 +1234,7 @@
modular open-source framework for assembly development.
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: minimus
+Depends: minimus
Homepage: http://amos.sourceforge.net/docs/pipeline/minimus.html
License: Artistic
Pkg-Description: AMOS lightweight assembler
@@ -1326,7 +1326,7 @@
Note: Found at
http://gforge.nci.nih.gov/softwaremap/trove_list.php?form_cat=337
-Recommends: mage2tab
+Depends: mage2tab
Homepage: https://www.cbil.upenn.edu/magewiki/index.php/mage2tab
License: CBIL Software and Data License (Apache-like)
WNPP: 476209
@@ -1338,7 +1338,7 @@
MINiML) from or into databases like GUS (the Genomics Unified Schema,
www.gusdb.org).
-Recommends: bambus
+Depends: bambus
Homepage: http://amos.sourceforge.net/docs/bambus/
License: Artistic
Pkg-Description: hierarchical approach to building contig scaffolds
@@ -1353,7 +1353,7 @@
integrated with the AMOS package (see http://amos.sourceforge.net/)
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: hawkeye
+Depends: hawkeye
Homepage: http://amos.sourceforge.net/hawkeye/
License: Artistic
Pkg-Description: Interactive Visual Analytics Tool for Genome Assemblies
@@ -1386,7 +1386,7 @@
assemblies. Genome Biology 8:R34.
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: murasaki
+Depends: murasaki
Homepage: http://murasaki.dna.bio.keio.ac.jp/
License: GPL
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/murasaki/trunk/
@@ -1405,7 +1405,7 @@
* repeat tolerant
* intelligent noise reduction
-Recommends: gmv
+Depends: gmv
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/index.php?GMV
License: GPL
Pkg-Description: comparative genome browser for Murasaki
@@ -1413,14 +1413,14 @@
anchors from Murasaki, annotation data from GenBank files, and
expression / prediction score from GFF files.
-Recommends: pyrophosphate-tools
+Depends: pyrophosphate-tools
Homepage: http://www-naweb.iaea.org/nafa/ipc/public/d4_pbl_6a.html
License: not specified
Pkg-Description: for assembling and searching pyrophosphate sequence data
Simple tools for assembling and searching high-density picolitre
pyrophosphate sequence data.
-Recommends: figaro
+Depends: figaro
Homepage: http://amos.sourceforge.net/Figaro/Figaro.html
License: Artistic
Pkg-Description: novel vector trimming software
@@ -1434,7 +1434,7 @@
Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
-Recommends: mirbase
+Depends: mirbase
Homepage: http://microrna.sanger.ac.uk/
License: Public Domain
WNPP: 420938
@@ -1457,7 +1457,7 @@
It is possible that mirbase will not be a package from the main archive, but
will be autogenerated as part of a larger data packaging effort.
-Recommends: elph
+Depends: elph
Homepage: http://www.cbcb.umd.edu/software/ELPH/
License: Artistic
Pkg-Description: motif finder that can find ribosome binding sites, exon splicing enhancers, or regulatory sites
@@ -1475,7 +1475,7 @@
http://www.cbcb.umd.edu/software/SeeEse/index.html .
Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/)
-Recommends: repeatfinder
+Depends: repeatfinder
Homepage: http://www.cbcb.umd.edu/software/RepeatFinder/
License: Artistic
Pkg-Description: finding repetitive sequences complete and draft genomes
@@ -1489,7 +1489,7 @@
Kurtz's REPuter.
Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/)
-Recommends: reputer
+Depends: reputer
Homepage: http://citeseer.ist.psu.edu/kurtz95reputer.html
License: to be clarified
Pkg-Description: fast computation of maximal repeats in complete genomes
@@ -1497,7 +1497,7 @@
palindromes in entire genomes very efficiently.
Note: Download site (temporarily) not available - try to contact author
-Recommends: transtermhp
+Depends: transtermhp
Homepage: http://transterm.cbcb.umd.edu/index.php
License: Free
Pkg-Description: finds rho-independent transcription terminators in bacterial genomes
@@ -1510,7 +1510,7 @@
relationship to DNA uptake. Genome Biology 8:R22 (2007).
Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/)
-Recommends: patman
+Depends: patman
Homepage: http://bioinf.eva.mpg.de/patman/
License: GPL-2+
WNPP: 482555
@@ -1520,7 +1520,7 @@
for approximate matches. It is optimized for searching for many small
pattern at the same time, for example microarray probes.
-Recommends: uniprime
+Depends: uniprime
Homepage: http://code.google.com/p/uniprime/
License: GPL-3+
Responsible: Charles Plessy <plessy at debian.org>
@@ -1536,7 +1536,7 @@
generates successful cross-species primers that take into account the
biological aspects of the PCR.
-Recommends: genetrack
+Depends: genetrack
Homepage: http://sysbio.bx.psu.edu/genetrack.html
License: MIT
Responsible: Charles Plessy <plessy at debian.org>
@@ -1546,7 +1546,7 @@
analyze data obtained via high-throughput rapid sequencing platforms such as
the 454 and Solexa as well as tiling array data based on various platforms.
-Recommends: operondb
+Depends: operondb
Homepage: http://www.cbcb.umd.edu/cgi-bin/operons/operons.cgi
License: to be clarified
Pkg-Description: detect and analyze conserved gene pairs
@@ -1575,7 +1575,7 @@
no info about license or downloadable code found, but tried to
contact authors.
-Recommends: trnascan-se
+Depends: trnascan-se
Homepage: http://lowelab.ucsc.edu/tRNAscan-SE/
License: GPL
Pkg-Description: program for improved detection of transfer RNA genes in genomic sequence
@@ -1591,7 +1591,7 @@
homologues such as selenocysteine tRNAs, tRNA-derived repetitive
elements and tRNA pseudogenes.
-Recommends: beast-mcmc
+Depends: beast-mcmc
Homepage: http://beast.bio.ed.ac.uk/
License: LGPL
Pkg-Description: Bayesian MCMC analysis of molecular sequences
@@ -1611,7 +1611,7 @@
There is a Debian package beast which is completely unrelated
to this project.
-Recommends: artemis
+Depends: artemis
Homepage: http://www.sanger.ac.uk/Software/Artemis/
License: GPL 2+
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -1626,7 +1626,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: srf
+Depends: srf
Homepage: http://srf.sourceforge.net/
License: Apache License V2.0
WNPP: 489983
@@ -1647,7 +1647,7 @@
This splits up into a library package which reads the format and a
doc package which documents to format.
-Recommends: alien-hunter
+Depends: alien-hunter
Homepage: http://www.sanger.ac.uk/Software/analysis/alien_hunter/
License: GPL
Pkg-Description: Interpolated Variable Order Motifs for identification of horizontally acquired DNA
@@ -1674,7 +1674,7 @@
So stripping the copy of BioJava from the source package
seem to be a good idea.
-Recommends: act
+Depends: act
Homepage: http://www.sanger.ac.uk/Software/ACT/
License: GPL
Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
@@ -1696,7 +1696,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: samtools
+Depends: samtools
Homepage: http://samtools.sourceforge.net
License: MIT
WNPP: 540453
@@ -1709,9 +1709,9 @@
sorting, merging and indexing, and allows to retrieve reads in any regions
swiftly.
-Recommends: acedb-other-dotter, acedb-other-belvu
+Depends: acedb-other-dotter, acedb-other-belvu
-Recommends: acedb-other
+Depends: acedb-other
Homepage: http://www.acedb.org/
License: GPL / LGPL
Language: C, C++
@@ -1747,7 +1747,7 @@
this is probably also not for us except somebody has real interest
and volunteers to clarify the license.
-Recommends: cdna-db
+Depends: cdna-db
Homepage: http://www.sanger.ac.uk/Software/analysis/cdna_db/
License: Artistic
Pkg-Description: quality-control checking of finished cDNA clone sequences
@@ -1774,7 +1774,7 @@
dump cDNA clones sequences (such as those that passed the QC
checking) from the cdna_db.
-Recommends: das-proserver
+Depends: das-proserver
Homepage: http://www.sanger.ac.uk/Software/analysis/proserver/
License: Same as Perl
Pkg-Description: lightweight Distributed Annotation System (DAS) server
@@ -1811,7 +1811,7 @@
last years we have also seen growing acceptance in the protein
sequence and structure communities.
-Recommends: spice
+Depends: spice
Homepage: http://www.efamily.org.uk/software/dasclients/spice/
License: GPL
Pkg-Description: Distributed Annotation System (DAS) client
@@ -1825,7 +1825,7 @@
possible to add new annotations to SPICE, and to compare them with
the already available information.
-Recommends: decipher
+Depends: decipher
Homepage: http://www.sanger.ac.uk/Software/analysis/decipher/
License: To be clarified
Pkg-Description: tracks duplications and deletions of DNA in patients
@@ -1837,7 +1837,7 @@
of these conditions. DECIPHER makes use of DAS technology to
integrate with Ensembl, the world's leading genome browser.
-Recommends: est-db
+Depends: est-db
Homepage: http://www.sanger.ac.uk/Software/analysis/est_db/
License: Artistic
Pkg-Description: Software suite for expressed sequence tag (EST) sequencing
@@ -1868,7 +1868,7 @@
available free of charge, and, where possible, similarly
open-licensed components have been used in its development.
-Recommends: finex
+Depends: finex
Homepage: http://www.sanger.ac.uk/Software/analysis/finex/
License: To be clarified
Pkg-Description: sequence homology searching
@@ -1879,7 +1879,7 @@
Please note FINEX is no longer supported but is available for
download.
-Recommends: hexamer
+Depends: hexamer
Homepage: http://www.sanger.ac.uk/Software/analysis/hexamer/
License: GPL
Pkg-Description: scan DNA sequences to look for likely coding regions
@@ -1906,7 +1906,7 @@
converted to 'c'.
The output of hexamer is in General Feature Format (GFF) format.
-Recommends: logomat-m
+Depends: logomat-m
Homepage: http://www.sanger.ac.uk/Software/analysis/logomat-m/
License: As Perl itself
Pkg-Description: visualize central aspects of Profile Hidden Markov Models (pHMMs)
@@ -1927,7 +1927,7 @@
Rahmann S BMC Bioinformatics. 2004;5;7. PMID: 14736340 DOI:
10.1186/1471-2105-5-7
-Recommends: coot
+Depends: coot
Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/
License: GPL
Pkg-Description: protein structure model-building, -completion, -validation
@@ -1936,7 +1936,7 @@
refinement, manual rotation/translation, rigid-body fitting, ligand
search, solvation, mutations, rotamers, Ramachandran plots...
-Recommends: r-ape
+Depends: r-ape
Homepage: http://ape.mpl.ird.fr/
License: GPL
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -1949,7 +1949,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: caftools
+Depends: caftools
Homepage: http://www.sanger.ac.uk/Software/formats/CAF/userguide.shtml
License: Free for non-commercial purposes
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -1973,7 +1973,7 @@
Format) or GAP4. This package includes tools to convert assemblies
from Newbler's ace format for loading into a gap4 assembly.
-Recommends: roche454ace2caf
+Depends: roche454ace2caf
Homepage: http://genome.imb-jena.de/software/roche454ace2caf/
License: not specified
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2000,7 +2000,7 @@
Format) or GAP4. This package includes tools to convert assemblies
from Newbler's ace format for loading into a gap4 assembly.
-Recommends: big-blast
+Depends: big-blast
Homepage: ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/extra/big_blast.pl
License: not specified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2012,7 +2012,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: blixem
+Depends: blixem
Homepage: http://bioinformatics.abc.hu/tothg/biocomp/other/Blixem.html
License: not specified
Responsible: BioLinux - Dan Swan <dswan at ceh.ac.uk>
@@ -2025,7 +2025,7 @@
This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: cap3
+Depends: cap3
Homepage: http://genome.cs.mtu.edu/cap/cap3.html
License: free for governmental agency or a non-profit educational institution
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2049,7 +2049,7 @@
convenience to Bio-Linux users so that the files are placed in
locations consistent with the Bio-Linux setup.
-Recommends: cd-hit
+Depends: cd-hit
Homepage: http://www.bioinformatics.org/cd-hit/
License: to be clarified
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2083,7 +2083,7 @@
at http://www.clcbio.com/index.php?id=28 but this seems to be only
"free as in beer" binary download - so this is not for us ...
-Recommends: coalesce
+Depends: coalesce
Homepage: http://evolution.gs.washington.edu/lamarc/coalesce.html
License: not specified
Responsible: BioLinux - Nathan S Haigh <n.haigh at sheffield.ac.uk>
@@ -2108,7 +2108,7 @@
at http://www.dendroscope.org but this project has only a
"free as in beer" binary download - so this is not for us ...
-Recommends: dotter
+Depends: dotter
Homepage: http://www.cgb.ki.se/cgb/groups/sonnhammer/Dotter.html
License: to be clarified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2139,7 +2139,7 @@
Homepage is currently unavailable but the source might be
obtainable from freebsd.org.
-Recommends: dotur
+Depends: dotur
Homepage: http://schloss.micro.umass.edu/software/dotur.html
License: GPL
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2156,7 +2156,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: estferret
+Depends: estferret
Homepage: http://legr.liv.ac.uk/EST-ferret/index.htm
License: to be clarified
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2204,7 +2204,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: estscan
+Depends: estscan
Homepage: http://estscan.sourceforge.net/
License: free
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2238,7 +2238,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: fasta
+Depends: fasta
Homepage: http://www.ebi.ac.uk/Tools/fasta/
License: no inclusion into commercial product
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2260,7 +2260,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: fluctuate
+Depends: fluctuate
Homepage: http://evolution.gs.washington.edu/lamarc/fluctuate.html
License: not specified
Responsible: BioLinux - Nathan S Haigh <n.haigh at sheffield.ac.uk>
@@ -2281,7 +2281,7 @@
BioLinux distribution http://envgen.nox.ac.uk/biolinux.html contains
a package.
-Recommends: forester
+Depends: forester
Homepage: http://sourceforge.net/projects/forester-atv/
License: LGPL
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2294,7 +2294,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: r-other-mott-happy
+Depends: r-other-mott-happy
Homepage: http://www.well.ox.ac.uk/happy/happyR.shtml
License: GPL
WNPP: 530007
@@ -2322,7 +2322,7 @@
locus position, but the happy packager allows a much richer range of
models to be fit to the data.
-Recommends: jalview
+Depends: jalview
Homepage: http://www.jalview.org/
License: GPL
WNPP: 507436
@@ -2334,7 +2334,7 @@
the Pfam protein domain database) but is available as a general
purpose alignment editor.
-Recommends: lamarc
+Depends: lamarc
Homepage: http://evolution.gs.washington.edu/lamarc/
License: Apache V2.0
Responsible: BioLinux - Nathan S Haigh <n.haigh at sheffield.ac.uk>
@@ -2352,7 +2352,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: lucy
+Depends: lucy
Homepage: http://rcc.uga.edu/applications/bioinformatics/lucy.html
License: GPL
Responsible: BioLinux - Dan Swan <dswan at ceh.ac.uk>
@@ -2379,7 +2379,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: maxd
+Depends: maxd
Homepage: http://www.bioinf.man.ac.uk/microarray/maxd/
License: Artistic
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2398,7 +2398,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: mesquite
+Depends: mesquite
Homepage: http://mesquiteproject.org/mesquite/mesquite.html
License: LGPL
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2426,7 +2426,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: migrate
+Depends: migrate
Homepage: http://popgen.scs.fsu.edu/Migrate-n.html
License: to be clarified
Responsible: BioLinux - Nathan S Haigh <n.haigh at sheffield.ac.uk>
@@ -2449,7 +2449,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: mrbayes
+Depends: mrbayes
Homepage: http://mrbayes.csit.fsu.edu/
License: GPL
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2472,7 +2472,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: msatfinder
+Depends: msatfinder
Homepage: http://www.genomics.ceh.ac.uk/msatfinder/
License: GPL
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2488,7 +2488,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: mview
+Depends: mview
Homepage: http://bio-mview.sourceforge.net/
License: GPL
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2505,7 +2505,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: oligoarrayaux
+Depends: oligoarrayaux
Homepage: http://dinamelt.bioinfo.rpi.edu/OligoArrayAux.php
License: non-free (fre academical use)
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2532,7 +2532,7 @@
this and so it might make soem sense to list it here - further
investigation is needed.
-Recommends: omegamap
+Depends: omegamap
Homepage: http://www.danielwilson.me.uk/software.html
License: to be clarified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2553,7 +2553,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: paml
+Depends: paml
Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html
License: not specified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2570,7 +2570,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: partigene
+Depends: partigene
Homepage: http://www.nematodes.org/bioinformatics/PartiGene/
License: GPL
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2585,7 +2585,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: pfaat
+Depends: pfaat
Homepage: http://pfaat.sourceforge.net/
License: GPL
Responsible: BioLinux - Dan Swan <dswan at ceh.ac.uk>
@@ -2598,7 +2598,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: pftools
+Depends: pftools
Homepage: http://www.isrec.isb-sib.ch/profile/profile.html
License: not specified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2610,7 +2610,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: prank
+Depends: prank
Homepage: http://www.ebi.ac.uk/goldman-srv/prank/
License: GPL (except two algorithms)
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2651,7 +2651,7 @@
project has only a "free as in beer" binary download - so this is not
for us ...
-Recommends: prot4est
+Depends: prot4est
Homepage: http://xyala.cap.ed.ac.uk/bioinformatics/prot4EST/index.shtml
License: GPL
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2664,7 +2664,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: qtlcart
+Depends: qtlcart
Homepage: http://statgen.ncsu.edu/qtlcart/
License: GPL
Responsible: BioLinux - Dan Swan <dswan at ceh.ac.uk>
@@ -2678,7 +2678,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: rbs-finder
+Depends: rbs-finder
Homepage: http://www.genomics.jhu.edu/RBSfinder/
License: not specified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2696,7 +2696,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: recombine
+Depends: recombine
Homepage: http://evolution.genetics.washington.edu/lamarc/recombine.html
License: not specified
Responsible: BioLinux - Nathan S Haigh <n.haigh at sheffield.ac.uk>
@@ -2718,7 +2718,7 @@
BioLinux distribution http://envgen.nox.ac.uk/biolinux.html contains
a package.
-Recommends: splitstree
+Depends: splitstree
Homepage: http://www-ab.informatik.uni-tuebingen.de/software/splitstree3/welcome.html
License: to be clarified
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2751,7 +2751,7 @@
http://envgen.nox.ac.uk/biolinux.html
-Recommends: taverna
+Depends: taverna
Homepage: http://taverna.sourceforge.net/
License: LGPL
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2777,7 +2777,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: taxinspector
+Depends: taxinspector
Homepage: http://nebc.nox.ac.uk/projects/taxinspector.html
License: Artistic + other free licenses
Responsible: BioLinux - Tim Booth <tbooth at ceh.ac.uk>
@@ -2789,7 +2789,7 @@
Remark: This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: tetra
+Depends: tetra
Homepage: http://www.megx.net/tetra/
License: free academic
Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
@@ -2809,7 +2809,7 @@
This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: trace2dbest
+Depends: trace2dbest
Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/
License: GPL
Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
@@ -2834,7 +2834,7 @@
This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
-Recommends: profit
+Depends: profit
Homepage: http://www.bioinf.org.uk/software/profit/
License: non-free
Responsible: Steffen Moeller <steffen_moeller at gmx.de>
@@ -2847,7 +2847,7 @@
Remark: The authors need to change the license, still.
The debian folder should appear in Debian Med Svn in some near future.
-Recommends: kempbasu
+Depends: kempbasu
Homepage: http://code.google.com/p/kempbasu/
License: GPL
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/kempbasu/trunk/
@@ -2862,7 +2862,7 @@
They provide two programs: kemp for the frequentist test and basu for
the Bayesian test, and some auxiliary scripts.
-Recommends: fastx-toolkit
+Depends: fastx-toolkit
Homepage: http://hannonlab.cshl.edu/fastx_toolkit
License: AGPL / MIT
Responsible: Assaf Gordon <gordon at cshl.edu>
@@ -2882,7 +2882,7 @@
.
http://hannonlab.cshl.edu/crosstab/
-Recommends: grogui
+Depends: grogui
Homepage: http://www.kde-apps.org/content/show.php?content=47665
License: GPL
Pkg-Description: graphical user interface for popular molecular dynamics package GROMACS
@@ -2895,7 +2895,7 @@
7. MDP Writer section to easily create your mdp files.
8. File icons based on their types.
-Recommends: rosetta
+Depends: rosetta
Homepage: http://www.rosettacommons.org/
License: not redistributable, not unlikely to change
Pkg-Description: Protein-folding, -docking, ..?
@@ -2908,7 +2908,7 @@
the source or binaries. Nevertheless, Debian-Med could possibly offer
an easy preparation of Debian packages.
-Recommends: obo-edit
+Depends: obo-edit
Homepage: http://www.geneontology.org
License: something free
Pkg-Description: editor for biological ontologies
Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=1830&view=diff&r1=1830&r2=1829&p1=projects/med/trunk/debian-med/tasks/bio-dev&p2=projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Sat Aug 22 19:25:45 2009
@@ -3,55 +3,55 @@
This metapackage will install Debian packages which might be helpful
for development of applications for micro-biological research.
-Recommends: bioperl, bioperl-run, libncbi6-dev, mcl
+Depends: bioperl, bioperl-run, libncbi6-dev, mcl
Comment: biomode is removed from Debian because it is orphaned upstream, outdated
and doese not work with recent Emacs any more
-Recommends: libvibrant6-dev
+Depends: libvibrant6-dev
Why: libmotif-dev conflicts lesstif-dev, so if someone wants to install
libmotif-dev it must be possible to deinstall libvibrant6-dev without
beeing forced to deinstall med-bio-dev as well
-Recommends: python-biopython
+Depends: python-biopython
-Recommends: libbio-ruby
+Depends: libbio-ruby
-Recommends: libbiojava-java
+Depends: libbiojava-java
-Recommends: libqsearch-dev
+Depends: libqsearch-dev
-Recommends: libgenome-1.3-0-dev
+Depends: libgenome-1.3-0-dev
-Recommends: libbio-mage-perl
+Depends: libbio-mage-perl
Why: Useful for the submission of microarray data to public repositories.
-Recommends: libajax5-dev, libnucleus5-dev
+Depends: libajax5-dev, libnucleus5-dev
-Recommends: libtfbs-perl
+Depends: libtfbs-perl
-Recommends: libgo-perl
+Depends: libgo-perl
-Recommends: r-cran-genetics, r-cran-haplo.stats
+Depends: r-cran-genetics, r-cran-haplo.stats
-Recommends: octave-bioinfo
+Depends: octave-bioinfo
-Recommends: libbio-graphics-perl
+Depends: libbio-graphics-perl
-Recommends: libbio-primerdesigner-perl
+Depends: libbio-primerdesigner-perl
-Recommends: libace-perl
+Depends: libace-perl
-Recommends: libbiococoa-dev
+Depends: libbiococoa-dev
-Recommends: libstaden-read-dev
+Depends: libstaden-read-dev
Suggests: r-cran-rocr
Why: Even if this package is not directly connected to biology it is maintained by
Debian Med team and should be in our focus and it is not wrong to suggest this
package for development of biological applications based on R
-Recommends: bioconductor
+Depends: bioconductor
Homepage: http://www.bioconductor.org/
Responsible: Debian CRAN/BioConductor/Omegahat packaging team <pkg-bioc-devel at lists.alioth.debian.org>
License: GPL/LGPL
@@ -80,7 +80,7 @@
A nice overview about all modules of BioDonductor is given at
http://www.bioconductor.org/packages/release/bioc/
-Recommends: bioclipse
+Depends: bioclipse
Homepage: http://www.bioclipse.net/
License: Eclipse Public License (EPL) + exception
Pkg-Description: platform for chemo- and bioinformatics based on Eclipse
@@ -101,7 +101,7 @@
followed on the Bioclipse Wiki where we document the progress and
ideas of the development on a daily basis.
-Recommends: libgff-perl
+Depends: libgff-perl
Homepage: http://www.sanger.ac.uk/Software/formats/GFF/
Responsible: David Paleino <d.paleino at gmail.com>
License: GPL-1+
@@ -112,7 +112,7 @@
.
This package provides a Perl module to use GFF objects.
-Recommends: libmems-1.5-1
+Depends: libmems-1.5-1
Homepage: http://asap.ahabs.wisc.edu/software/software-development-libraries/libmems.html
Responsible: Andreas Tille <tille at debian.org>
License: GPL
@@ -127,7 +127,7 @@
input sequence, and this data can be stored externally (i.e. on disk) to
further reduce memory requirements.
-Recommends: libbio-das-perl
+Depends: libbio-das-perl
Homepage: http://www.biodas.org/
Responsible: Steffen Moeller <moeller at debian.org>
License: Perl Artistic License
@@ -138,7 +138,7 @@
version 1.5. Both unencrypted (http:) and SSL-encrypted (https:)
DAS servers are supported.
-Recommends: limma
+Depends: limma
Homepage: http://bioinf.wehi.edu.au/limma
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 293320
@@ -148,7 +148,7 @@
investigate gene expression data from microarrays with the
statistical package R.
-Recommends: libbio-mage-utils-perl
+Depends: libbio-mage-utils-perl
Homepage: http://mged.sourceforge.net/
License: MIT/X
WNPP: 476202
@@ -164,7 +164,7 @@
Bio-MAGE-Utils contains extra modules for handling MAGE XML and MGED ontology,
as well as SQL utilities.
-Recommends: seqan
+Depends: seqan
Homepage: http://www.seqan.de/
License: LGPL
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/seqan/trunk/
@@ -182,7 +182,7 @@
See http://lists.debian.org/debian-med/2009/06/msg00000.html for recent
discussion on Debian Med mailing list.
-Recommends: libsbml1
+Depends: libsbml1
Homepage: http://www.sbml.org/
License: LGPL
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libsbml/trunk/
Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=1830&view=diff&r1=1830&r2=1829&p1=projects/med/trunk/debian-med/tasks/imaging&p2=projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging (original)
+++ projects/med/trunk/debian-med/tasks/imaging Sat Aug 22 19:25:45 2009
@@ -18,34 +18,34 @@
where you'll find direct links to the most recent yearly edition
ftp://medical.nema.org/medical/dicom/2008/ .
-Recommends: amide, ctsim, ctn, dicomnifti, imagej, minc-tools, medcon, python-nifti, xmedcon, dcmtk
+Depends: amide, ctsim, ctn, dicomnifti, imagej, minc-tools, medcon, python-nifti, xmedcon, dcmtk
Suggests: imagemagick, pngquant, imview
-Recommends: nifti-bin
+Depends: nifti-bin
-Recommends: aeskulap
+Depends: aeskulap
-Recommends: fslview, fsl
+Depends: fslview, fsl
-Recommends: gwyddion
+Depends: gwyddion
-Recommends: sofa-apps
+Depends: sofa-apps
-Recommends: python-mvpa
+Depends: python-mvpa
Why: Suggested by maintainer Michael Hanke <michael.hanke at gmail.com>
-Recommends: python-nipy
+Depends: python-nipy
Why: Although listed in -dev task, it also has a strong focus on interactive
data analysis.
-Recommends: caret
+Depends: caret
-Recommends: libgdcm-tools
+Depends: libgdcm-tools
-Recommends: slicer
+Depends: slicer
-Recommends: bioimagesuite
+Depends: bioimagesuite
Homepage: http://www.bioimagesuite.org/
License: GPL
Pkg-Description: integrated image analysis software suite
@@ -66,7 +66,7 @@
compiling it from source and packaging issues at
http://research.yale.edu/bioimagesuite/forum/index.php?board=12.0
-Recommends: drjekyll
+Depends: drjekyll
Homepage: http://drjekyll.sourceforge.net
License: GPL
Pkg-Description: interactive voxel editor for viewing and editing three-dimensional images
@@ -77,7 +77,7 @@
a final polishing process.
Why: Hint given by Petter Reinholdtsen
-Recommends: libvista2
+Depends: libvista2
Homepage: http://mia.sourceforge.net/
License: GPL
Pkg-Description: software environment for computer vision research
@@ -95,7 +95,7 @@
Max Planck Institute of Cognitive Neuroscience
(http://www.cns.mpg.de/).
-Recommends: dcm4che
+Depends: dcm4che
Homepage: http://www.dcm4che.org/
License: LGPL, MPL, Apache, other (also non-free)
Pkg-Description: collection of open source applications and utilities healthcare enterprise
@@ -115,7 +115,7 @@
application provides many robust and scalable services.
-Recommends: piano
+Depends: piano
Homepage: http://mbi.dkfz-heidelberg.de/mbi/software/
License: BSD
Pkg-Description: medical image processing library for surgical planning
@@ -123,7 +123,7 @@
multi-dimensional medical image processing, analysis and visualization.
It is used in the field of surgical planning.
-Recommends: pixelmed
+Depends: pixelmed
Homepage: http://www.pixelmed.com/index.html#PixelMedJavaDICOMToolkit
License: Free
Pkg-Description: PixelMed Java DICOM Toolkit
@@ -132,7 +132,7 @@
support for display of directories, images, reports and spectra, and DICOM object
validation.
-Recommends: mesa-test-tools
+Depends: mesa-test-tools
Homepage: http://ihedoc.wustl.edu/mesasoftware/
License: free
Pkg-Description: IHE Test Software for Radiology
@@ -165,7 +165,7 @@
of CTN software in those tools does not have a separate release number
but is more current than version 3.0.6."
-Recommends: devide
+Depends: devide
Homepage: http://code.google.com/p/devide/
License: BSD
WNPP: 509110
@@ -179,13 +179,13 @@
.
See the DeVIDE website at http://visualisation.tudelft.nl/Projects/DeVIDE
-Recommends: dicom4j
+Depends: dicom4j
Homepage: http://dicom4j.sourceforge.net/
License: GPL
Pkg-Description: Java framework for Dicom
Java framework for Dicom
-Recommends: opendicom.net
+Depends: opendicom.net
Homepage: http://opendicom.sourceforge.net/
License: LGPL
Responsible: Albert Gnandt <agnandt at users.sourceforge.net>
@@ -234,7 +234,7 @@
All GUI applications focus the popular GNOME desktop, but are 100%
platform independent by relying on Mono.
-Recommends: afni
+Depends: afni
Homepage: http://afni.nimh.nih.gov/
WNPP: 409849
Responsible: Michael Hanke <michael.hanke at gmail.com>
@@ -247,7 +247,7 @@
In addition to its own format AFNI understands the NIfTI format and is
therefore easily usable in combination with FSL and Freesurfer.
-Recommends: blox
+Depends: blox
Homepage: http://sourceforge.net/projects/blox/
License: GPL
Pkg-Description: medical imaging and visualization program
@@ -257,7 +257,7 @@
Johns Hopkins University, Psychiatric Neuroimaging Lab
(http://pni.med.jhu.edu/methods/morph.htm).
-Recommends: conquest-dicom-server
+Depends: conquest-dicom-server
Homepage: http://www.xs4all.nl/~ingenium/dicom.html
License: Public domain
Pkg-Description: full featured DICOM server
@@ -272,7 +272,7 @@
* Advanced automatic image forwarding and (de)compression
* DICOM caching and archive merging
-Recommends: dicomscope
+Depends: dicomscope
Homepage: http://dicom.offis.de/dscope.php.en
License: OFFIS
WNPP: 508990
@@ -298,7 +298,7 @@
presentation states. The program is not appropriate to be used in a
clinical environment, e.g. for reporting.
-Recommends: dicom3tools
+Depends: dicom3tools
Homepage: http://www.dclunie.com/dicom3tools.html
License: BSD
WNPP: 508901
@@ -310,7 +310,7 @@
image formats to DICOM. Can handle older ACR/NEMA format data, and some
proprietary versions of that such as SPI.
-Recommends: ecg2png
+Depends: ecg2png
X-Homepage-old: http://www.cardiothink.com/downloads
Homepage: http://www.freshports.org/graphics/ecg2png/
License: GPL
@@ -335,7 +335,7 @@
can be downloaded fro instance from
http://www.freshports.org/graphics/ecg2png/ .
-Recommends: kradview
+Depends: kradview
Homepage: http://www.orcero.org/irbis/kradview/
License: GPLv3
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/kradview/trunk
@@ -353,7 +353,7 @@
and the graphical interface has been developed in C++ and includes
the former routines with "extern C" for fast use.
-Recommends: opensourcepacs
+Depends: opensourcepacs
Homepage: http://www.mii.ucla.edu/index.php/MainSite:OpenSourcePacsHome
License: GPL
WNPP: 509113
@@ -373,7 +373,7 @@
OpenSourcePACS is a product of the UCLA Medical Imaging Informatics
group (http://www.mii.ucla.edu/).
-Recommends: pixelmed-dicom-toolkit
+Depends: pixelmed-dicom-toolkit
Homepage: http://www.pixelmed.com/index.html#PixelMedJavaDICOMToolkit
License: BSD
Pkg-Description:
@@ -404,7 +404,7 @@
VisIt was designed to handle very large data set sizes in the terascale
range and yet can also handle small data sets in the kilobyte range.
-Recommends: mni-autoreg
+Depends: mni-autoreg
Homepage: http://www.bic.mni.mcgill.ca/software/mni_autoreg/
License: no-free, but GPLed parts
Responsible: Michael Hanke <michael.hanke at gmail.com>
@@ -425,7 +425,7 @@
http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=mni-autoreg-model
to Debian Med svn and start group maintenance.
-Recommends: mni-n3
+Depends: mni-n3
Homepage: http://www.bic.mni.mcgill.ca/software/N3/
License: BSDish
Responsible: Michael Hanke <michael.hanke at gmail.com>
@@ -441,7 +441,7 @@
http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=mni-n3
to Debian Med svn and start group maintenance.
-Recommends: brainvisa
+Depends: brainvisa
Homepage: http://brainvisa.info/
License: Free? (CeCill License)
Pkg-Description: image processing factory for MR images
@@ -460,7 +460,7 @@
labeling of the cortical folds according to a nomenclature of the
main sulci.
-Recommends: maris
+Depends: maris
Homepage: http://maris.homelinux.org/
License: GPL
Pkg-Description: package suite for Radiological Workflow
@@ -471,7 +471,7 @@
that is an ensamble of single pieces that cooperate together using
IHE profiles.
-Recommends: via
+Depends: via
Homepage: http://www.cbs.mpg.de/institute/software/lipsia
License: GPL
WNPP: 521328
@@ -487,7 +487,7 @@
All tools operate on data in VISTA format. The package contains several
converters from e.g. PNG, PGM or PNM to this data format and back.
-Recommends: lipsia
+Depends: lipsia
Homepage: http://www.cbs.mpg.de/institute/software/lipsia
License: GPL
WNPP: 521412
@@ -511,7 +511,7 @@
package contains converters for medical image data in iBruker, ANALYZE and
NIfTI format -- converting VISTA images into NIfTI files is also supported.
-Recommends: micromanager
+Depends: micromanager
Homepage: http://www.micro-manager.org/
License: free, but some nonfree parts with NDA
Responsible: Johan Henriksson <johan.henriksson at ki.se>
@@ -538,7 +538,7 @@
images with noise. Currently, no artifacts are implemented.
-Recommends: odin
+Depends: odin
Homepage: http://od1n.sourceforge.net/
License: GPL
WNPP: 410318
@@ -568,7 +568,7 @@
write: The sequences that come with ODIN are easy to understand and
modify.
-Recommends: fiji
+Depends: fiji
Homepage: http://pacific.mpi-cbg.de/
Responsible: Mark Longair <mark-debianlists at longair.net>
Pkg-URL: http://pacific.mpi-cbg.de/wiki/index.php/Downloads
Modified: projects/med/trunk/debian-med/tasks/practice
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/practice?rev=1830&view=diff&r1=1830&r2=1829&p1=projects/med/trunk/debian-med/tasks/practice&p2=projects/med/trunk/debian-med/tasks/practice
==============================================================================
--- projects/med/trunk/debian-med/tasks/practice (original)
+++ projects/med/trunk/debian-med/tasks/practice Sat Aug 22 19:25:45 2009
@@ -7,7 +7,7 @@
Depends: gnumed-server
-Recommends: libchipcard-tools
+Depends: libchipcard-tools
Why: Reading German "Gesundheitskarte"
Depends: aeskulap
Modified: projects/med/trunk/debian-med/tasks/psychology
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/psychology?rev=1830&view=diff&r1=1830&r2=1829&p1=projects/med/trunk/debian-med/tasks/psychology&p2=projects/med/trunk/debian-med/tasks/psychology
==============================================================================
--- projects/med/trunk/debian-med/tasks/psychology (original)
+++ projects/med/trunk/debian-med/tasks/psychology Sat Aug 22 19:25:45 2009
@@ -3,16 +3,16 @@
This metapackage contains dependencies for a collection of software
which might be helpful for psychological research.
-Recommends: python-pyepl
+Depends: python-pyepl
-Recommends: praat
+Depends: praat
-Recommends: r-cran-foreign, r-cran-psy, psignifit
+Depends: r-cran-foreign, r-cran-psy, psignifit
Why: analysis packages of particular relevance for psych. data
-Recommends: psychopy
+Depends: psychopy
-Recommends: visionegg
+Depends: visionegg
Homepage: http://www.visionegg.org
License: LGPL
WNPP: 365856
Modified: projects/med/trunk/debian-med/tasks/tools
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/tools?rev=1830&view=diff&r1=1830&r2=1829&p1=projects/med/trunk/debian-med/tasks/tools&p2=projects/med/trunk/debian-med/tasks/tools
==============================================================================
--- projects/med/trunk/debian-med/tasks/tools (original)
+++ projects/med/trunk/debian-med/tasks/tools Sat Aug 22 19:25:45 2009
@@ -3,18 +3,18 @@
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
-Recommends: mencal, cycle, pondus
+Depends: mencal, cycle, pondus
Suggests: cl-pubmed
Why: Strong dependency would cost installing a large amount of Common Lisp tools which in most cases is not worth the effort
-Recommends: mssstest
+Depends: mssstest
-Recommends: wgerman-medical, hunspell-de-med
+Depends: wgerman-medical, hunspell-de-med
-Recommends: quitcount
+Depends: quitcount
-Recommends: linuxorg-pcal
+Depends: linuxorg-pcal
Homepage: http://linuxorg.sourceforge.net/about_m.phtml#pcal
License: GPL
Pkg-Description: assist in women menstrual cycles tracking and fertility periods prediction
@@ -25,7 +25,7 @@
very precise. It is not recommended to use this method alone for the
birth control.
-Recommends: hunspell-en-med
+Depends: hunspell-en-med
Homepage: http://e-medtools.com/openmedspel.html
License: GPL
Pkg-Description: English medical spelling word list
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