[Blends-commit] r1479 - in projects/med/trunk/debian-med: debian tasks

Fri Mar 27 12:43:40 UTC 2009

Author: mhanke-guest
Date: Fri Mar 27 12:43:40 2009
New Revision: 1479
URL: http://svn.debian.org/viewsvn/blends?rev=1479&view=rev

Log:
Added VIA, updated LIPSIA item in imaging task.

Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/imaging

Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=1479&view=diff&r1=1479&r2=1478&p1=projects/med/trunk/debian-med/debian/changelog&p2=projects/med/trunk/debian-med/debian/changelog
==============================================================================

--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Fri Mar 27 12:43:40 2009
@@ -8,8 +8,10 @@
 
   [ Michael Hanke ]
   * Added ODIN to imaging task.
+  * Added VIA to the imaging task.
+  * Updated LIPSIA item to ppoint to the packaging VCS and note ITP.
 
- -- Michael Hanke <michael.hanke at gmail.com>  Tue, 24 Mar 2009 14:24:29 +0100
+ -- Michael Hanke <michael.hanke at gmail.com>  Fri, 27 Mar 2009 13:42:18 +0100
 
 debian-med (1.1) experimental; urgency=low
 

Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=1479&view=diff&r1=1479&r2=1478&p1=projects/med/trunk/debian-med/tasks/imaging&p2=projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Fri Mar 27 12:43:40 2009
@@ -490,36 +490,43 @@
  that is an ensamble of single pieces that cooperate together using
  IHE profiles.
 
+Depends: via
+Homepage: http://www.cbs.mpg.de/institute/software/lipsia
+License: GPL
+WNPP: 521328
+Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/via.git
+Responsible: Michael Hanke <michael.hanke at gmail.com>
+Pkg-Description: library and tools for volumetric image analysis
+ This package provides a toolkit for functional and structural (medical)
+ image data processing. It consists of a library of about 50 different
+ programs ranging from simple data handling routines and viewers to
+ complex image transformation algorithms.
+ .
+ All tools operate on data in VISTA format. The package contains several
+ converters from e.g. PNG, PGM or PNM to this data format and back.
+
 Depends: lipsia
 Homepage: http://www.cbs.mpg.de/institute/software/lipsia
 License: GPL
-Responsible: Felix Botner <botner at cbs.mpg.de>
-Pkg-URL: ftp://lipsia.cbs.mpg.de/lipsia
-Pkg-Description: Analysis of MRI and fMRI data - binary
- Leipzig Image Processing and Statistical Inference Algorithms
- (LIPSIA)
- .
- The software package LIPSIA was developed by the Max Planck Institute
- of Cognitive Neuroscience, Leipzig, for the data processing and
- evaluation of functional magnetic resonance images. The analysis of
- fMRI data comprises various aspects including filtering, spatial
- transformation, statistical evaluation as well as segmentation and
- visualization. All these aspects are covered by LIPSIA. For the
- statistical evaluation, a number of well established and
- peer-reviewed algorithms were implemented in LIPSIA that allow an
- effcient and user-friendly processing of fMRI data sets. As the
- amount of data that must be handled is enormous, an important aspect
- in the development LIPSIA was the efficiency of the software
- implementation. In LIPSIA, particular emphasis was placed on the
- development of new visualization and segmentation techniques that
- support visualizations of individual brain anatomy so that experts
- can assess the exact location of activation patterns in individual
- brains. LIPSIA is non- commercial. LIPSIA is freely available upon
- request. However, as we don't have suffcient manpower, we can't
- support an unlimited number of LIPSIA users.  Therefore, we plan to
- offer LIPSIA initially on lytoa limited number of cooperation
- partners. Please contact us, if you are interested in becoming a
- LIPSIA cooperation partner.
+WNPP: 521412
+Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/lipsia.git
+Responsible: Michael Hanke <michael.hanke at gmail.com>
+Pkg-Description: analysis suite for MRI and fMRI data
+ Leipzig Image Processing and Statistical Inference Algorithms (LIPSIA)
+ .
+ This is a software package for the data processing and evaluation of
+ functional magnetic resonance images. The analysis of fMRI data comprises
+ various aspects including filtering, spatial transformation, statistical
+ evaluation as well as segmentation and visualization. All these aspects are
+ covered by LIPSIA. For the statistical evaluation, a number of well established
+ and peer-reviewed algorithms were implemented in LIPSIA that allow an effcient
+ and user-friendly processing of fMRI data sets. As the amount of data that must
+ be handled is enormous, an important aspect in the development LIPSIA was the
+ efficiency of the software implementation.
+ .
+ LIPSIA operates exclusively on data in the VISTA data format. However, the
+ package contains converters for medical image data in iBruker, ANALYZE  and
+ NIfTI format -- converting VISTA images into NIfTI files is also supported.
 
 Depends: micromanager
 Homepage: http://www.micro-manager.org/
@@ -552,7 +559,7 @@
 Homepage: http://od1n.sourceforge.net/
 License: GPL
 WNPP: 410318
-Vcs-Git: git://git.debian.org/pkg-exppsy/odin.git
+Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/odin.git
 Responsible: Michael Hanke <michael.hanke at gmail.com>
 Pkg-Description: develop, simulate and run magnetic resonance sequences
  C++ software framework to develop, simulate and run magnetic resonance

