[Blends-commit] r1963 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: tille
Date: Tue Nov  3 12:29:58 2009
New Revision: 1963
URL: http://svn.debian.org/viewsvn/blends?rev=1963&view=rev

Log:
Added reasons for not yet updated packages


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1963&view=diff&r1=1963&r2=1962&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Nov  3 12:29:58 2009
@@ -5,7 +5,20 @@
 
 X-Begin-Category: Phylogenetic analysis
 
-Depends:     altree, fastdnaml, njplot, tree-puzzle | tree-ppuzzle
+Depends: altree
+Remark: altree 1.1.0 should be not be packaged
+ According to Vincent Danjean <vdanjean.ml at free.fr> version 1.1.0 should not
+ be packaged for two reasons:
+ .
+  1. New dependencies (libtamuanova-perl, nanova and libnanova-perl) which
+     need to be packaged.
+  2. There are still bugs in the new method added in altree 1.1.0 and the doc
+     is not updated.
+ .
+ See http://lists.debian.org/debian-med/2009/08/msg00104.html for further
+ details.
+
+Depends: fastdnaml, njplot, tree-puzzle | tree-ppuzzle
 
 Depends: treeviewx
 X-Published-Authors: FIXME
@@ -191,9 +204,20 @@
 Published-URL: http://www3.interscience.wiley.com/cgi-bin/abstract/112094040/ABSTRACT
 Published-DOI: 10.1002/jcc.20312
 
-Depends:     garlic, gamgi, gdpc, ghemical, gromacs, pymol, rasmol, r-other-bio3d, massxpert
+Depends:     garlic, gamgi, gdpc, ghemical, gromacs, pymol, r-other-bio3d, massxpert
 Comment:     r-other-bio3d depends from r-cran-rocr which is also maintained by Debian Med team
 
+Depends: rasmol
+Remark:  New version needs additional dependencies which need to be packaged
+ If you want to help getting the new version of rasmol into Debian you can work
+ on packaging the following projects first:
+ .
+  neartree: function library efficiently solving the Nearest Neighbor Problem (#550849)
+  cqrlib: utility library for quaternion arithmetic and rotation math (#550850)
+  cvector: ANSI C implementation of dynamic arrays approximating the C++ vector class (#550852)
+ .
+ Any help to get these libraries packaged is welcome.
+
 X-End-Category: Molecular modelling and molecular dynamics
 
 Depends:     plasmidomics