[Blends-commit] r1931 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: tille
Date: Wed Oct 14 08:26:33 2009
New Revision: 1931
URL: http://svn.debian.org/viewsvn/blends?rev=1931&view=rev

Log:
Updated information of alien_hunter


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1931&view=diff&r1=1931&r2=1930&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Oct 14 08:26:33 2009
@@ -1788,6 +1788,7 @@
 Depends: alien-hunter
 Homepage: http://www.sanger.ac.uk/Software/analysis/alien_hunter/
 License: GPL
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/alien-hunter/trunk/
 Pkg-Description: Interpolated Variable Order Motifs for identification of horizontally acquired DNA
  alien_hunter is an application for the prediction of putative
  Horizontal Gene Transfer (HGT) events with the implementation of
@@ -1800,17 +1801,14 @@
  of the predicted regions. The predictions (embl format) can be
  automatically loaded into Artemis genome viewer freely available at:
  http://www.sanger.ac.uk/Software/Artemis/.
- .
- The manuscript describing the alien_hunter algorithm is available
- from Bioinformatics: Interpolated variable order motifs for
- identification of horizontally acquired DNA: revisiting the
- Salmonella pathogenicity islands.  Vernikos GS, Parkhill J
- Bioinformatics. 2006;. PMID: 16837528
-Remark: Archive contains outdated copy of BioJava
- The archive contains biojava 1.4 - but we it was working
- successfully with the Debian packaged version of BioJava.
- So stripping the copy of BioJava from the source package
- seem to be a good idea.
+Published-Title: Interpolated variable order motifs for identification of horizontally acquired DNA:
+ revisiting the Salmonella pathogenicity islands
+Published-Authors: GS Vernikos and J. Parkhill
+Published-In: Bioinformatics
+Published-Year: 2006
+Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16837528
+Published-DOI: 10.1093/bioinformatics/btl369
+Published-PubMed: 16837528 
 
 Depends: act
 Homepage: http://www.sanger.ac.uk/Software/ACT/