[Blends-commit] r1943 - projects/med/trunk/debian-med/tasks

Sun Oct 25 16:50:49 UTC 2009

Author: tille
Date: Sun Oct 25 16:50:49 2009
New Revision: 1943
URL: http://svn.debian.org/viewsvn/blends?rev=1943&view=rev

Log:
Remove additional info from now official packages


Modified:
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/imaging
   projects/med/trunk/debian-med/tasks/imaging-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1943&view=diff&r1=1943&r2=1942&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Sun Oct 25 16:50:49 2009
@@ -295,6 +295,16 @@
 Published-Year: 2000
 Published-DOI: 10.1073/pnas.230304397
 
+Depends: alien-hunter
+Published-Title: Interpolated variable order motifs for identification of horizontally acquired DNA:
+ revisiting the Salmonella pathogenicity islands
+Published-Authors: GS Vernikos and J. Parkhill
+Published-In: Bioinformatics
+Published-Year: 2006
+Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16837528
+Published-DOI: 10.1093/bioinformatics/btl369
+Published-PubMed: 16837528 
+
 Suggests: seqan-apps
 
 Depends: r-other-genabel
@@ -1795,31 +1805,6 @@
 Remark: This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
 
-Depends: alien-hunter
-Homepage: http://www.sanger.ac.uk/Software/analysis/alien_hunter/
-License: GPL
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/alien-hunter/trunk/
-Pkg-Description: Interpolated Variable Order Motifs for identification of horizontally acquired DNA
- alien_hunter is an application for the prediction of putative
- Horizontal Gene Transfer (HGT) events with the implementation of
- Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits
- compositional biases using variable order motif distributions and
- captures more reliably the local composition of a sequence compared
- to fixed-order methods. Optionally the predictions can be parsed into
- a 2-state 2nd order Hidden Markov Model (HMM), in a change-point
- detection framework, to optimize the localization of the boundaries
- of the predicted regions. The predictions (embl format) can be
- automatically loaded into Artemis genome viewer freely available at:
- http://www.sanger.ac.uk/Software/Artemis/.
-Published-Title: Interpolated variable order motifs for identification of horizontally acquired DNA:
- revisiting the Salmonella pathogenicity islands
-Published-Authors: GS Vernikos and J. Parkhill
-Published-In: Bioinformatics
-Published-Year: 2006
-Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16837528
-Published-DOI: 10.1093/bioinformatics/btl369
-Published-PubMed: 16837528 
-
 Depends: act
 Homepage: http://www.sanger.ac.uk/Software/ACT/
 License: GPL

Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=1943&view=diff&r1=1943&r2=1942&p1=projects/med/trunk/debian-med/tasks/imaging&p2=projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Sun Oct 25 16:50:49 2009
@@ -82,6 +82,13 @@
 
 Depends: dicom3tools
 
+Depends: odin
+Published-Title: ODIN: Object-oriented development interface for NMR
+Published-Authors: Thies H. Jochimsen, Michael von Mengershausen
+Published-In: Journal of Magnetic Resonance 170:67-78
+Published-Year: 2004
+Published-URL: http://od1n.sourceforge.net/odin.pdf
+
 Depends: bioimagesuite
 Homepage: http://www.bioimagesuite.org/
 License: GPL
@@ -528,42 +535,6 @@
  parameters (TR, TE ...) to be specified and then produces simulated
  images with noise. Currently, no artifacts are implemented.
 
-
-Depends: odin
-Homepage: http://od1n.sourceforge.net/
-License: GPL
-WNPP: 410318
-Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/odin.git
-Responsible: Michael Hanke <michael.hanke at gmail.com>
-Pkg-URL: http://apsy.gse.uni-magdeburg.de/debian/html/pkgs/odin
-Pkg-Description: develop, simulate and run magnetic resonance sequences
- C++ software framework to develop, simulate and run magnetic resonance
- sequences on different platforms. It is
- .
- - State-of-the-Art: Contemporary magnetic resonance imaging techniques
- are available, for example sequence modules for echo-planar imaging
- and spiral-imaging, parallel imaging with GRAPPA reconstruction,
- two-dimensional pulses and field-map-based distortion corrections.
- .
- - Easy-to-Use: All common steps, from compiling your sequence to
- plotting or simulating it, can be performed within a graphical user
- interface.
- .
- - Hardware Independent: ODIN runs on a variety of operating systems and
- scanners. Once you develop a sequence, it can be executed/simulated
- on very different hardware, ranging from a real-time sequence
- controller to your personal workstation.
- .
- - Truly Object-Oriented: Written in C++ with an object-oriented design,
- ODIN is very modular, flexible and requires very little code to
- write: The sequences that come with ODIN are easy to understand and
- modify.
-Published-Title: ODIN: Object-oriented development interface for NMR
-Published-Authors: Thies H. Jochimsen, Michael von Mengershausen
-Published-In: Journal of Magnetic Resonance 170:67-78
-Published-Year: 2004
-Published-URL: http://od1n.sourceforge.net/odin.pdf
-
 Depends: fiji
 Homepage: http://pacific.mpi-cbg.de/
 Responsible: Mark Longair <mark-debianlists at longair.net>

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging-dev?rev=1943&view=diff&r1=1943&r2=1942&p1=projects/med/trunk/debian-med/tasks/imaging-dev&p2=projects/med/trunk/debian-med/tasks/imaging-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev	(original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev	Sun Oct 25 16:50:49 2009
@@ -34,37 +34,11 @@
 Depends: libvia-dev
 
 Depends: odin
-Homepage: http://od1n.sourceforge.net/
-License: GPL
-WNPP: 410318
-Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/odin.git
-Responsible: Michael Hanke <michael.hanke at gmail.com>
-Pkg-URL: http://apsy.gse.uni-magdeburg.de/debian/html/pkgs/odin
-Pkg-Description: Object Oriented Development Interface for NMR
- C++ software framework to develop, simulate and run magnetic resonance
- sequences on different platforms. It is
- .
- State-of-the-Art: Contemporary magnetic resonance imaging techniques
- are available, for example sequence modules for echo-planar imaging
- and spiral-imaging, parallel imaging with GRAPPA reconstruction,
- two-dimensional pulses and field-map-based distortion corrections.
- .
- Easy-to-Use: All common steps, from compiling your sequence to
- plotting or simulating it, can be performed within a graphical user
- interface.
- .
- Hardware Independent: ODIN runs on a variety of operating systems and
- scanners. Once you develop a sequence, it can be executed/simulated
- on very different hardware, ranging from a real-time sequence
- controller to your personal workstation.
- .
- Truly Object-Oriented: Written in C++ with an object-oriented design,
- ODIN is very modular, flexible and requires very little code to
- write: The sequences that come with ODIN are easy to understand and
- modify.
 
 Depends: libcv-dev
 
+Depends: libvxl1-dev
+
 Depends: libvista2-dev
 Homepage: http://mia.sourceforge.net/
 License: GPL
@@ -114,21 +88,6 @@
  There seems to be a lot of packaging stuff just done by upstream
  guessed from http://itanix.rutgers.edu/rumba/ and the project homepage.
 
-Depends: libvxl1-dev
-Homepage: http://vxl.sf.net
-License: BSD
-Language: C++
-Responsible: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-WNPP: 390999
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/vxl/trunk/
-Pkg-URL: http://mentors.debian.net/debian/pool/main/v/vxl/
-Pkg-Description: C++ Libraries for Computer Vision Research and Implementation
- VXL (the Vision-something-Libraries) is a collection of C++ libraries
- designed for computer vision research and implementation. It was created
- from TargetJr and the IUE with the aim of making a light, fast and
- consistent system. VXL is written in ANSI/ISO C++ and is designed to be
- portable over many platforms.
-
 Depends: gmic
 Homepage: http://gmic.sourceforge.net/
 License: CeCILL License (GPL-compatible)

