[Blends-commit] r1866 - projects/med/trunk/debian-med/tasks

Wed Sep 2 13:16:32 UTC 2009

Author: mhanke-guest
Date: Wed Sep  2 13:16:32 2009
New Revision: 1866
URL: http://svn.debian.org/viewsvn/blends?rev=1866&view=rev

Log:
References for MRI-tools.

Modified:
   projects/med/trunk/debian-med/tasks/imaging

Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=1866&view=diff&r1=1866&r2=1865&p1=projects/med/trunk/debian-med/tasks/imaging&p2=projects/med/trunk/debian-med/tasks/imaging
==============================================================================

--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Wed Sep  2 13:16:32 2009
@@ -26,7 +26,21 @@
 
 Depends: aeskulap
 
-Depends: fslview, fsl
+Depends: fsl
+Published-Title: Advances in functional and structural MR image analysis and implementation as FSL
+Published-Authors: S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, P.M. Matthews
+Published-In: NeuroImage, 23:208-219
+Published-Year: 2004
+Published-URL: http://dx.doi.org/10.1016/j.neuroimage.2004.07.051
+X-Published-doi: 10.1016/j.neuroimage.2004.07.051
+
+Depends: fslview
+Published-Title: Advances in functional and structural MR image analysis and implementation as FSL
+Published-Authors: S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, P.M. Matthews
+Published-In: NeuroImage, 23:208-219
+Published-Year: 2004
+Published-URL: http://dx.doi.org/10.1016/j.neuroimage.2004.07.051
+X-Published-doi: 10.1016/j.neuroimage.2004.07.051
 
 Depends: via-bin
 
@@ -36,12 +50,24 @@
 
 Depends: python-mvpa
 Why: Suggested by maintainer Michael Hanke <michael.hanke at gmail.com>
+Published-Title: PyMVPA: a unifying approach to the analysis of neuroscientific data
+Published-Authors: Michael Hanke, Yaroslav O. Halchenko, Per B. Sederberg, Emanuele Olivetti, Ingo Fründ, Jochem W. Rieger, Christoph S. Herrmann, James V. Haxby, Stephen José Hanson, Stefan Pollmann
+Published-In: Frontiers in Neuroinformatics, 3:3
+Published-Year: 2009
+Published-URL: http://www.frontiersin.org/neuroinformatics/paper/10.3389/neuro.11/003.2009/
+X-Published-doi: 10.3389/neuro.11.003.2009
+
 
 Depends: python-nipy
 Why: Although listed in -dev task, it also has a strong focus on interactive
  data analysis.
 
 Depends: caret
+Published-Title: An Integrated Software Suite for Surface-based Analyses of Cerebral Cortex
+Published-Authors: David C. Van Essen, Heather A. Drury, James Dickson, John Harwell, Donna Hanlon, Charles H. Anderson
+Published-In: Journal of American Medical Informatics Association, 8(5): 443-459
+Published-Year: 2001
+Published-URL: http://www.pubmedcentral.nih.gov/articlerender.fcgi?pubmedid=11522765
 
 Depends: libgdcm-tools
 
@@ -250,6 +276,11 @@
  3D cortical surface models, and mapping of volumetric data (SUMA).
  In addition to its own format AFNI understands the NIfTI format and is
  therefore easily usable in combination with FSL and Freesurfer.
+Published-Title: AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages
+Published-Authors: Robert W. Cox
+Published-In: Computers and Biomedical Research, 29:162-173
+Published-Year: 1996
+Published-URL: http://afni.nimh.nih.gov/pub/dist/doc/papers/afni_paper1.pdf
 
 Depends: blox
 Homepage: http://sourceforge.net/projects/blox/
@@ -498,6 +529,12 @@
  LIPSIA operates exclusively on data in the VISTA data format. However, the
  package contains converters for medical image data in iBruker, ANALYZE  and
  NIfTI format -- converting VISTA images into NIfTI files is also supported.
+Published-Title: Lipsia—a new software system for the evaluation of functional magnetic resonance images of the human brain
+Published-Authors: Gabriele Lohmann, Karsten Müller, Volker Bosch, Heiko Mentzel, Sven Hessler, Lin Chen, S. Zysset, D. Yves von Cramon
+Published-In: Computerized Medical Imaging and Graphics, 25: 449-457
+Published-Year: 2001
+Published-URL: http://www.medicalimagingandgraphics.com/article/S0895-6111(01)00008-8
+X-Published-doi: 10.1016/S0895-6111(01)00008-8
 
 Depends: micromanager
 Homepage: http://www.micro-manager.org/
@@ -555,6 +592,11 @@
  ODIN is very modular, flexible and requires very little code to
  write: The sequences that come with ODIN are easy to understand and
  modify.
+Published-Title: ODIN: Object-oriented development interface for NMR
+Published-Authors: Thies H. Jochimsen, Michael von Mengershausen
+Published-In: Journal of Magnetic Resonance 170:67-78
+Published-Year: 2004
+Published-URL: http://od1n.sourceforge.net/odin.pdf
 
 Depends: fiji
 Homepage: http://pacific.mpi-cbg.de/

