[Blends-commit] r1878 - projects/med/trunk/debian-med/tasks

Mon Sep 14 07:04:24 UTC 2009

Author: tille
Date: Mon Sep 14 07:04:22 2009
New Revision: 1878
URL: http://svn.debian.org/viewsvn/blends?rev=1878&view=rev

Log:
Removed extra information for now official packages (samtools, r-other-mott-happy)


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1878&view=diff&r1=1878&r2=1877&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Sep 14 07:04:22 2009
@@ -251,6 +251,10 @@
 
 Depends: staden-io-lib-utils
 
+Depends: samtools
+
+Depends: r-other-mott-happy
+
 Depends: r-other-genabel
 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
 Responsible: Steffen Moeller <steffen_moeller at gmx.de>
@@ -327,6 +331,7 @@
 Homepage: http://icwww.epfl.ch/~stamatak/AxParafit.html
 Responsible: David Paleino <d.paleino at gmail.com>
 License: GPL
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/axparafit/trunk/
 WNPP: 464323
 Pkg-Description: optimized statistical analysis of host-parasite coevolution
  AxParafit is a highly optimized version of Pierre Legendre's Parafit
@@ -1542,7 +1547,6 @@
  part of the AMOS suite.
 Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
-
 Depends: mirbase
 Homepage: http://microrna.sanger.ac.uk/
 License: Public Domain
@@ -1807,19 +1811,6 @@
 Remark: This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
 
-Depends: samtools
-Homepage: http://samtools.sourceforge.net
-License: MIT
-WNPP: 540453
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/samtools/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/samtools/trunk/
-Responsible: Charles Plessy <plessy at debian.org>
-Pkg-Description: Processing sequence alignments in SAM format.
- Samtools is a set of utilities that manipulate alignments in the BAM format.
- It imports from and exports to the SAM (Sequence Alignment/Map) format, does
- sorting, merging and indexing, and allows to retrieve reads in any regions
- swiftly.
-
 Depends: acedb-other-dotter, acedb-other-belvu
 
 Depends: acedb-other
@@ -2407,34 +2398,6 @@
 Remark: This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
 
-Depends: r-other-mott-happy
-Homepage: http://www.well.ox.ac.uk/happy/happyR.shtml
-License: GPL
-WNPP: 530007
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-mott-happy/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-other-mott-happy/trunk/
-Responsible: Steffen Moeller <moeller at debian.org>
-Pkg-Description: GNU R package for fine-mapping complex diseases
- The idea behind this package is that when multiple strains of
- animals that differ in their susceptibility to multiple diseases
- are bread over multiple generations, then one can analyse the
- contribution that a particular genetic locus has to each of those
- diseases. While in the past this approach has been performed
- for one disease at a time, this tool extends the statistics
- for allowing multiple crosses and thus save animal lifes. A larger
- stock of animals with more generations to keep them will further
- help producing larger numbers of observable cross-over events
- and thus help increasing the resolution of the mapping.
- .
- happy is an R interface into the HAPPY C package for fine-mapping
- Quantitative Trait Loci (QTL) in Heterogenous Stocks (HS). An HS is
- an advanced intercross between (usually eight) founder inbred strains
- of mice. HS are suitable for fine-mapping QTL. The happy package is
- an extension of the original C program happy; it uses the C code to
- compute the probability of descent from each of the founders, at each
- locus position, but the happy packager allows a much richer range of
- models to be fit to the data.
-
 Depends: jalview
 Homepage: http://www.jalview.org/
 License: GPL

