[Blends-commit] r1883 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: tille
Date: Wed Sep 16 06:59:15 2009
New Revision: 1883
URL: http://svn.debian.org/viewsvn/blends?rev=1883&view=rev

Log:
Sync MUMmer publication info as in debian/upstream-metadata.yaml, add some PubMed IDs to play with.  The plan is to parse Published-URL for the PubMed Id as well.


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1883&view=diff&r1=1883&r2=1882&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Sep 16 06:59:15 2009
@@ -27,10 +27,12 @@
 
 Depends: mummer
 Published-Title: Versatile and open software for comparing large genomes
-Published-Authors: S. Kurtz, A. Phillippy, A.L. Delcher, M. Smoot, M. Shumway, C. Antonescu, S.L. Salzberg
+Published-Authors: Stefan Kurtz, Adam Phillippy, Arthur L. Delcher, Michael Smoot, Martin Shumway, Corina Antonescu, Steven L. Salzberg
 Published-In: Genome Biol. 5(2):R12
 Published-Year: 2004
 Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/14759262
+Published-DOI: 10.1186/gb-2004-5-2-r12
+Published-PubMed: 14759262
 
 Depends: blast2
 Published-Title: Basic local alignment search tool
@@ -45,7 +47,7 @@
 Published-In: Methods Mol Biol. 537:39-64
 Published-Year: 2009
 Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/19378139
-
+Published-PubMed: 19378139
 
 Depends: t-coffee
 Published-Title: T-Coffee: A novel method for multiple sequence alignments
@@ -53,6 +55,7 @@
 Published-In: Journal of Molecular Biology 302(1):205-217
 Published-Year: 2000
 Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/10964570
+Published-PubMed: 10964570
 
 Depends: kalign
 Published-Title: Kalign--an accurate and fast multiple sequence alignment algorithm
@@ -60,6 +63,7 @@
 Published-In: BMC Bioinformatics, 6:298
 Published-Year: 2005
 Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16343337
+Published-PubMed: 16343337
 
 Depends: hmmer
 Published-Title: Multiple Alignment Using Hidden Markov Models.