[Blends-commit] r1888 - projects/med/trunk/debian-med/tasks

Debian Pure Blends Subversion Commit noreply at alioth.debian.org
Mon Sep 28 20:08:10 UTC 2009


Author: tille
Date: Mon Sep 28 20:08:09 2009
New Revision: 1888
URL: http://svn.debian.org/viewsvn/blends?rev=1888&view=rev

Log:
Added bwa


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1888&view=diff&r1=1888&r2=1887&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Sep 28 20:08:09 2009
@@ -3025,3 +3025,19 @@
 Published-Year: 2003
 Published-URL: http://lagan.stanford.edu/lagan_web/mlagan_gr.pdf
 X-Category: Comparative genomics
+
+Depends: bwa
+Homepage: http://bio-bwa.sourceforge.net
+Language: C
+Responsible: Charles Plessy <plessy at debian.org>
+WNPP: 548719
+License: GPL
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bwa/trunk/
+Pkg-Description: Burrows-Wheeler Aligner
+ Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short
+ nucleotide sequences against a long reference sequence such as the human
+ genome. It implements two algorithms, bwa-short and dBWT-SW. The former works
+ for query sequences shorter than 200 bp and the latter for longer sequences up
+ to around 100 kbp. Both algorithms do gapped alignment. They are usually more
+ accurate and faster on queries with low error rates.
+



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