[Blends-commit] r2299 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: tille
Date: Mon Aug  2 08:30:16 2010
New Revision: 2299
URL: http://svn.debian.org/viewsvn/blends?rev=2299&view=rev

Log:
Removed extra information from now official package python-pynast


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2299&view=diff&r1=2299&r2=2298&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Aug  2 08:30:16 2010
@@ -407,6 +407,12 @@
 Published-Year: 2006
 Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16332707
 
+Depends: python-pynast
+Published-Title: PyNAST: a flexible tool for aligning sequences to a template alignment
+Published-Authors: J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight
+Published-In: Bioinformatics 26: 266-267
+Published-Year: 2010
+Published-DOI: 10.1093/bioinformatics/btp636
 
 Depends: raxml
 Homepage: http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm
@@ -3207,38 +3213,6 @@
  PyCogent toolkit. It makes extensive use of unit tests, and is highly
  modular to facilitate custom analyses.
 
-Depends: python-pynast
-WNPP: 587189
-Homepage:  http://pynast.sf.net
-License: GPL
-Language: Python
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-nast/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-nast/trunk/
-Responsible: Steffen Moeller <steffen_moeller at gmx.de>
-Pkg-Description: alignment of short DNA sequences
- The package provices a reimplementation of the Nearest Alignment 
- Space Termination tool in python. It was prepared for next generation
- sequencers.
- .
- Given a set of sequences and a template alignment, PyNAST will align the
- input sequences against the template alignment, and return a multiple
- sequence alignment which contains the same number of positions (or
- columns) as the template alignment. This facilitates the analysis of new
- sequences in the context of existing alignments, and additional data
- derived from existing alignments such as phylogenetic trees. Because
- any protein or nucleic acid sequences and template alignments can be
- provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
- .
- Since version 1.1, PyNAST no longer exactly matches the output
- of the origianl NAST program. Instead it focuses on getting better
- alignments. Users who wish to exactly match the results of NAST should
- download PyNAST 1.0.
-Published-Title: PyNAST: a flexible tool for aligning sequences to a template alignment
-Published-Authors: J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight
-Published-In: Bioinformatics 26: 266-267
-Published-Year: 2010
-Published-DOI: 10.1093/bioinformatics/btp636
-
 Depends: denoiser
 WNPP: 587274
 Homepage:  http://www.microbio.me/denoiser/