[Blends-commit] r2316 - in projects/med/trunk/debian-med: config debian
Debian Pure Blends Subversion Commit
noreply at alioth.debian.org
Wed Aug 4 11:26:30 UTC 2010
Author: tille
Date: Wed Aug 4 11:26:29 2010
New Revision: 2316
URL: http://svn.debian.org/viewsvn/blends?rev=2316&view=rev
Log:
Added debian/control to svn to have a recored what control file was finally released, polished config/control, release to enable smooth vtk migration
Added:
projects/med/trunk/debian-med/debian/control
Modified:
projects/med/trunk/debian-med/config/control
projects/med/trunk/debian-med/debian/changelog
Modified: projects/med/trunk/debian-med/config/control
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/config/control?rev=2316&view=diff&r1=2316&r2=2315&p1=projects/med/trunk/debian-med/config/control&p2=projects/med/trunk/debian-med/config/control
==============================================================================
--- projects/med/trunk/debian-med/config/control (original)
+++ projects/med/trunk/debian-med/config/control Wed Aug 4 11:26:29 2010
@@ -16,13 +16,14 @@
.
* med-bio for biological research
* med-bio-dev for developing applications in biological research
- * med-cms for publicating a medical site on the internet
* med-epi for epidemiology
* med-imaging for image processing
* med-imaging-dev for developing applications for image processing
* med-pharmacy for pharmaceutical research
* med-physics for radiation oncology, diagnostic imaging, related fields
* med-practice for general practitioners
+ * med-psychology for psychology
+ * med-statistics miscellaneous tools medical for statistics
* med-tools contains miscellaneous tools
* med-typesetting depends from useful tools for typesetting
.
Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=2316&view=diff&r1=2316&r2=2315&p1=projects/med/trunk/debian-med/debian/changelog&p2=projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Wed Aug 4 11:26:29 2010
@@ -1,10 +1,17 @@
-debian-med (1.7) UNRELEASED; urgency=low
+debian-med (1.7) unstable; urgency=low
* Rebuild against blends-dev >= 0.6.14 to prevent
accessint internet at package build time
* Standards-Version: 3.9.1 (no changes needed)
+ * tasks/imaging-dev: Revcent version of vtk to make
+ sure vtk migration will be not blocked by Debian Med
+ * config/control:
+ - Do not mention mention med-cms any more because the package
+ will not be created any more. The only dependency in Debian
+ zope-zms was removed.
+ - Add med-psychology and med-statistics
- -- Andreas Tille <tille at debian.org> Tue, 03 Aug 2010 10:33:17 +0200
+ -- Andreas Tille <tille at debian.org> Wed, 04 Aug 2010 12:43:09 +0200
debian-med (1.6) unstable; urgency=low
Added: projects/med/trunk/debian-med/debian/control
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/debian/control Wed Aug 4 11:26:29 2010
@@ -0,0 +1,183 @@
+# This file is autogenerated via make -f debian/rules dist. Do not edit!
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends-Indep: blends-dev (>= 0.6.14)
+Standards-Version: 3.9.1
+Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/blends/projects/med/trunk/debian-med/
+
+Package: med-tasks
+Architecture: all
+Depends: tasksel
+Description: Debian Med tasks for tasksel
+ This package provides Debian Med tasks in tasksel.
+ .
+ These tasks are described in detail at
+ http://debian-med.alioth.debian.org/tasks/
+
+Package: med-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.12)
+Conflicts: med-common
+Replaces: med-common
+Provides: med-common
+Description: Debian Med Project config package
+ This package provides the basic infrastructure of all med-* packages and is
+ needed by them.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med using debconf.
+ .
+ Other packages in Debian Med Project are:
+ .
+ * med-bio for biological research
+ * med-bio-dev for developing applications in biological research
+ * med-epi for epidemiology
+ * med-imaging for image processing
+ * med-imaging-dev for developing applications for image processing
+ * med-pharmacy for pharmaceutical research
+ * med-physics for radiation oncology, diagnostic imaging, related fields
+ * med-practice for general practitioners
+ * med-psychology for psychology
+ * med-statistics miscellaneous tools medical for statistics
+ * med-tools contains miscellaneous tools
+ * med-typesetting depends from useful tools for typesetting
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get all the non-commercial medical software which is available
+ for Debian GNU/Linux.
+
+
+Package: med-bio
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: adun.app, alien-hunter, altree, amap-align, autodock, ballview, blast2, boxshade, bwa, dialign, dialign-tx, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, gamgi, garlic, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, infernal, kalign, last-align, loki, mafft, maq, massxpert, melting, mipe, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, ncoils, njplot, perlprimer, phyml, picard-tools, plasmidomics, plink, poa, primer3, probcons, proda, pymol, r-bioc-hilbertvis, r-cran-qtl, r-other-bio3d, r-other-mott-happy, rasmol, readseq, rnahybrid, samtools, sibsim4, sigma-align, sim4, ssake, staden-io-lib-utils, t-coffee, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, treeviewx, velvet, wise
+Suggests: acedb-other, acedb-other-belvu, acedb-other-dotter, act, agdbnet, amos-assembler, amoscmp, arb, artemis, asap, autodocktools, axparafit, axpcoords, bambus, beast-mcmc, big-blast, bio-mauve, blixem, bowtie, btk-core, cactus, caftools, cap3, cd-hit, cdna-db, clustalw, clustalw-mpi, clustalx, cluster3, coalesce, codonw, compclust, contralign, coot, copycat, crossbow, cytoscape, das-proserver, dazzle, decipher, denoiser, dotter, dotur, ecell, elph, embassy-phylip, emboss-explorer, emboss-kaptain, est-db, estferret, estscan, exalt, excavator, fasta, fastx-toolkit, figaro, finex, fluctuate, forester, galaxy, gbioseq, gbrowse, genesplicer, genetrack, genezilla, genographer, gentle, glimmerhmm, gmap, gmv, grogui, haploview, hawkeye, hexamer, igv, jalview, jigsaw, jmol, jstreeview, jtreeview, kempbasu, lagan, lamarc, logomat-m, lucy, mage2tab, martj, mauvealigner, maxd, melting-gui, meme, mesquite, migrate, minimus, mira, mirbase, molekel, molphy, mothur, mozilla-biofox, mrbayes, msatfinder, mummergpu, murasaki, mview, ncbi-tools++, ngila, obo-edit, oligoarrayaux, omegamap, operondb, paml, partigene, patman, pdb2pqr, pfaat, pftools, phagefinder, phpphylotree, phylip, phylographer, phylowin, populations, prank, proalign, profit, prot4est, pyrophosphate-tools, python-cogent, python-pynast, qiime, qtlcart, r-ape, r-other-genabel, r-other-valdar-bagphenotype.library, raster3d, raxml, rbs-finder, recombine, repeatfinder, reputer, roche454ace2caf, rose, rosetta, seaview, seq-gen, seqan-apps, sequenceconverter.app, smile, spice, splitstree, ssaha, tacg, taverna, taxinspector, tetra, tigr-assembler, tm-align, trace2dbest, tracetuner, transtermhp, treebuilder3d, treeplot, treetime, treevolve, trnascan-se, twain, uniprime, vienna-rna, wgs-assembler
+Description: Debian Med micro-biology packages
+ This metapackage will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: bioperl, bioperl-run, biosquid, libace-perl, libajax6-dev, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-ruby, libbiojava-java, libgenome-1.3-0-dev, libgo-perl, libncbi6-dev, libnucleus6-dev, libqsearch-dev, libsrf-dev, libstaden-read-dev, libtfbs-perl, libvibrant6-dev, mcl, octave-bioinfo, python-biopython, r-cran-genetics, r-cran-haplo.stats, seqan-dev
+Suggests: bioclipse, bioconductor, libajax5-dev, libbio-das-perl, libbiococoa-dev, libgff-perl, libmems-1.5-1, libnucleus5-dev, libsbml1, limma, r-cran-rocr
+Description: Debian Med packages for development of micro-biology applications
+ This metapackage will install Debian packages which might be helpful
+ for development of applications for micro-biological research.
+
+Package: med-data
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: freediams
+Suggests: drugref.org
+Description: Debian Med suggestions for medical databases
+ Currently Debian Med does not yet contain any medical data like drug
+ databases. We just provide a list of Free Software that might be used
+ and which might be included into Debian at a later point in time
+ provided somebody is willing to take over the packaging work.
+
+Package: med-epi
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: epigrass, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epir, r-cran-epitools
+Suggests: netepi-analysis, netepi-collection, r-cran-msm, r-cran-surveillance, repast, swarm
+Description: Debian Med epidemiology related packages
+ This metapackage will install tools that are useful in epidemiological
+ research. Several packages making use of the GNU R data language for
+ statistical investigation. It might be a good idea to read the paper
+ "A short introduction to R for Epidemiology" at
+ http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
+
+Package: med-imaging
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, amide, ants, caret, ctn, ctsim, dcmtk, dicom3tools, dicomnifti, dicomscope, fslview, gwyddion, imagej, itksnap, libgdcm-tools, lipsia, medcon, minc-tools, mrtrix, nifti-bin, odin, openmeeg-tools, pixelmed-java, python-mvpa, python-nifti, python-nipy, python-nipype, slicer, sofa-apps, via-bin, voxbo, xmedcon
+Suggests: afni, bioimagesuite, blox, brainvisa, cdmedicpacs, connectomeviewer, conquest-dicom-server, dcm4che, devide, dicom4j, drjekyll, ecg2png, fiji, fsl, gofigure2, imagemagick, imview, invesalius, jemris, jist, kradview, libvista2, loci-bio-formats, maris, mesa-test-tools, micromanager, mipav, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mricron, mrisim, opendicom.net, openelectrophy, opensourcepacs, piano, pngquant, sigviewer, stir, visit, vmtk
+Description: Cross-platform for visualizing, processing and analysing of bioimages
+ GoFigure2 is an open-source, cross-platform application for
+ visualizing, processing and analyzing of multidimensional microscopy
+ data. Users can visualize, segment and track cells through time,
+ detect cell-division and ultimately generate lineages.
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cimg-dev, ctn-dev, gmic, libcv-dev, libgdcm2-dev, libgiftiio-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libopenmeeg-dev, libteem1-dev, libvia-dev, libvolpack1-dev, libvxl1-dev, odin, python-dicom, python-gdcm, python-mvpa, python-nipy, python-nipype
+Suggests: igstk-examples, insighttoolkit3-examples, libbiosig4c++-dev, libigstk4-dev, libmni-perllib-perl, libnifti-dev, libnifti-doc, libvista2-dev, libvtk5.4, python-libavg
+Description: Debian Med packages for medical image development
+ This metapackage will install Debian packages which might be useful
+ for developing applications for medical image processing.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: chemtool
+Description: Debian Med packages for pharmaceutical research
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.
+
+Package: med-physics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: octave3.2, paw, paw++, r-base
+Suggests: biosig, gate, openvibe, paw-demos
+Description: Debian Med packages for medical physicists
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.
+
+Package: med-practice
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, freediams, gnumed-client, gnumed-server, libchipcard-tools, r-cran-medadherence
+Suggests: clearhealth, elementalclinic, elexis, freeb, freemed, libctapimkt0, medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, resmedicinae, sqlclinic, tinyheb
+Description: Debian Med packages for practice management
+ This metapackage contains dependencies for a collection of software
+ which might be helpful for practitioners to manage their practice.
+
+Package: med-psychology
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: praat, psignifit, psychopy, python-pyepl, r-cran-foreign, r-cran-psy
+Suggests: miscpsycho, psignifit3, psych, psychometric, psychotree, psyphy, visionegg
+Description: Debian Med packages for psychology
+ This metapackage contains dependencies for a collection of software
+ which might be helpful for psychological research.
+
+Package: med-statistics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: r-cran-qvalue, r-cran-randomforest
+Suggests: science-statistics
+Description: Debian Med statistics
+ This metapackage will install packages which are helpful to do statistics
+ with a special focus on tasks in medical care.
+
+Package: med-tools
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cycle, hunspell-de-med, mencal, pondus, quitcount, wgerman-medical, workrave
+Suggests: cl-pubmed, hunspell-en-med, linuxorg-pcal, mssstest, python-clips
+Description: Debian Med several tools
+ This metapackage will install tools for several purposes in health care.
+ Currently it contains some simple programs for Personal Health.
+
+Package: med-typesetting
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: texlive-latex-extra, texlive-science
+Suggests: bibus, kbibtex
+Description: Debian Med support for typesetting and publishing
+ This metapackage will install Debian packages that might be helpful
+ for typesetting and publishing in medical care and structural
+ biology.
+
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