[Blends-commit] r2329 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: plessy
Date: Sun Aug  8 23:39:40 2010
New Revision: 2329
URL: http://svn.debian.org/viewsvn/blends?rev=2329&view=rev

Log:
A cloud task for Debian Med.

See the following discussions:
 - http://lists.debian.org/20100807234330.GA13900@merveille.plessy.net
 - http://lists.debian.org/20100808072135.GD1730@an3as.eu


Added:
   projects/med/trunk/debian-med/tasks/cloud

Added: projects/med/trunk/debian-med/tasks/cloud
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/tasks/cloud	Sun Aug  8 23:39:40 2010
@@ -0,0 +1,107 @@
+Task: Cloud
+Description: Cloud computing image for Debian Med.
+ This metapackage will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences, that do not
+ depend on graphical toolkits and therefore can fit on system images for use
+ in cloud computing clusters, where space can be limited.
+
+X-Begin-Category: Phylogenetic analysis
+Depends:
+	altree,
+	fastdnaml,
+	phyml,
+	tree-puzzle | tree-ppuzzle
+X-End-Category: Phylogenetic analysis
+
+X-Begin-Category: Genetics
+Depends:
+	alien-hunter,
+	bagphenotype,
+	fastlink,
+	loki,
+	plink,
+	r-other-valdar-bagphenotype.library
+	r-cran-qtl,
+	r-other-mott-happy
+X-End-Category: Genetics
+
+X-Begin-Category: Sequence alignments and related programs.
+Depends: 
+	amap-align,
+	blast2
+	boxshade,
+	dialign,
+	dialign-tx,
+	exonerate,
+	gff2aplot,
+	glam2,
+	gmap,
+	hmmer,
+	kalign,
+	mafft,
+	mummer,
+	muscle,
+	poa,
+	probcons,
+	proda,
+	python-pynast,
+	sibsim4,
+	sigma-align,
+	sim4,
+	t-coffee,
+	wise
+Depends:     clustalw | clustalw-mpi
+Comment: non-free
+X-End-Category: Sequence alignments and related programs.
+
+X-Begin-Category: EMBOSS
+Depends:
+	emboss,
+	embassy-domalign,
+	embassy-domainatrix,
+	embassy-domsearch,
+	embassy-phylip
+X-End-Category: EMBOSS
+
+X-Begin-Category: High throughput sequencing
+Depends:
+	bwa,
+	last-align,
+	maq,
+	picard-tools,
+	r-bioc-hilbertvis,
+	samtools,
+	ssake,
+	velvet
+X-End-Category: High throughput sequencing
+
+X-Begin-Category: Analysis of RNA sequences.
+Depends:
+	infernal,
+	rnahybrid
+X-End-Category: Analysis of RNA sequences.
+
+X-Begin-Category: Molecular modelling and molecular dynamics
+Depends:
+	gromacs,
+	mustang,
+	theseus
+Depends: autodock, raster3d
+Comment: non-free
+X-End-Category: Molecular modelling and molecular dynamics
+
+X-Begin-Category: Tools for the molecular biologist.
+Depends:
+	acedb-other,
+	melting, mipe,
+	ncbi-epcr,
+	ncbi-tools-bin,
+	ncoils,
+	primer3,
+	readseq,
+	tigr-glimmer,
+	seqan-apps,
+	staden-io-libs-utils
+Depends: python-cogent
+Comment: non-free
+X-End-Category: Tools for the molecular biologist.