[Blends-commit] r2529 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Dec  9 12:19:18 2010
New Revision: 2529

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2529
Log:
Added tabix

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2529&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Dec  9 12:19:18 2010
@@ -3346,6 +3346,23 @@
 Published-In: Nucleic Acids Res. 34:W609-W612
 Published-Year: 2006
 
+Depends: tabix
+WNPP: 606446
+Homepage: http://samtools.sourceforge.net/tabix.shtml
+License: MIT/X
+Language: C, plus some Java, python and Perl bindings
+Vcs-Git: git://git.debian.org/debian-med/tabix.git
+Vcs-Browser: http://git.debian.org/?p=debian-med/tabix.git;a=summary
+Responsible: Charles Plessy <plessy at debian.org>
+Pkg-Description: generic indexer for TAB-delimited genome position files
+ Tabix indexes files where some columns indicate sequence coordinates: name
+ (usually a chromosme), start and stop. The input data file must be position
+ sorted and compressed by bgzip (provided in this package), which has a gzip
+ like interface. After indexing, tabix is able to quickly retrieve data lines by
+ chromosomal coordinates. Fast data retrieval also works over network if an URI
+ is given as a file name.
+
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html